Wall clock time and date at job start Mon Mar 30 2020 04:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46897 * 109.47048 * 2 1 4 4 C 1.46900 * 110.99772 * 288.28891 * 3 2 1 5 5 C 1.53007 * 109.47230 * 148.04639 * 4 3 2 6 6 H 1.08991 * 109.50179 * 56.28602 * 5 4 3 7 7 C 1.53117 * 109.50212 * 176.40817 * 5 4 3 8 8 C 1.53121 * 109.16021 * 177.59263 * 7 5 4 9 9 C 1.53036 * 109.28052 * 302.34738 * 8 7 5 10 10 N 1.46851 * 109.52366 * 59.17655 * 9 8 7 11 11 C 1.46849 * 111.19700 * 298.25681 * 10 9 8 12 12 C 1.46901 * 111.00193 * 164.33634 * 3 2 1 13 13 H 1.09000 * 109.46787 * 58.43111 * 12 3 2 14 14 C 1.53000 * 109.46751 * 178.43182 * 12 3 2 15 15 C 1.50698 * 109.47012 * 298.42993 * 12 3 2 16 16 H 1.08005 * 120.00195 * 359.72839 * 15 12 3 17 17 C 1.37875 * 120.00175 * 180.02562 * 15 12 3 18 18 N 1.31513 * 119.99352 * 359.72459 * 17 15 12 19 19 Si 1.86796 * 120.00186 * 179.72757 * 17 15 12 20 20 H 1.48495 * 109.47285 * 89.99886 * 19 17 15 21 21 H 1.48500 * 109.46794 * 209.99900 * 19 17 15 22 22 H 1.48497 * 109.47132 * 329.99698 * 19 17 15 23 23 H 1.08993 * 109.47715 * 305.40672 * 1 2 3 24 24 H 1.08996 * 109.47150 * 65.41075 * 1 2 3 25 25 H 1.09003 * 109.47076 * 185.40432 * 1 2 3 26 26 H 1.08994 * 109.47351 * 239.99805 * 2 1 3 27 27 H 1.09004 * 109.46834 * 119.99578 * 2 1 3 28 28 H 1.09002 * 109.47449 * 268.04595 * 4 3 2 29 29 H 1.09008 * 109.47354 * 28.04672 * 4 3 2 30 30 H 1.08996 * 109.52382 * 297.50150 * 7 5 4 31 31 H 1.09000 * 109.52662 * 57.69225 * 7 5 4 32 32 H 1.09000 * 109.50296 * 182.40054 * 8 7 5 33 33 H 1.09007 * 109.53066 * 62.30659 * 8 7 5 34 34 H 1.09003 * 109.46142 * 299.16397 * 9 8 7 35 35 H 1.08997 * 109.46555 * 179.19426 * 9 8 7 36 36 H 1.00898 * 111.00048 * 62.35292 * 10 9 8 37 37 H 1.09000 * 109.46815 * 301.73150 * 11 10 9 38 38 H 1.08998 * 109.45567 * 181.74822 * 11 10 9 39 39 H 1.09001 * 109.46497 * 173.13619 * 14 12 3 40 40 H 1.08998 * 109.47178 * 293.12951 * 14 12 3 41 41 H 1.08994 * 109.47611 * 53.13632 * 14 12 3 42 42 H 0.97003 * 119.99927 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7893 2.0247 -1.3022 5 6 1.5366 3.5199 -1.0983 6 1 2.3758 3.9608 -0.5605 7 6 1.3854 4.2031 -2.4602 8 6 1.0732 5.6869 -2.2462 9 6 -0.1978 5.8195 -1.4042 10 7 -0.0022 5.1506 -0.1116 11 6 0.2520 3.7153 -0.2896 12 6 3.4401 1.4412 0.3703 13 1 4.0219 0.8409 -0.3292 14 6 3.9228 2.8922 0.3213 15 6 3.6174 0.8997 1.7654 16 1 2.7599 0.5529 2.3231 17 6 4.8733 0.8526 2.3322 18 7 5.9173 1.2753 1.6533 19 14 5.0920 0.1885 4.0644 20 1 5.3350 -1.2753 4.0063 21 1 6.2508 0.8575 4.7084 22 1 3.8640 0.4553 4.8556 23 1 -0.3634 0.5953 0.8375 24 1 -0.3633 0.4276 -0.9344 25 1 -0.3633 -1.0231 0.0968 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8901 28 1 2.6664 1.8874 -1.9347 29 1 0.9214 1.5715 -1.7813 30 1 2.3137 4.1036 -3.0227 31 1 0.5710 3.7358 -3.0139 32 1 0.9223 6.1699 -3.2116 33 1 1.9050 6.1631 -1.7271 34 1 -1.0321 5.3557 -1.9305 35 1 -0.4149 6.8746 -1.2380 36 1 0.7412 5.5872 0.4126 37 1 -0.5843 3.2614 -0.8212 38 1 0.3619 3.2423 0.6863 39 1 4.9387 2.9505 0.7118 40 1 3.9093 3.2450 -0.7100 41 1 3.2644 3.5149 0.9269 42 1 6.8010 1.2419 2.0519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233502243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:05 Heat of formation + Delta-G solvation = -23.235720 kcal Electronic energy + Delta-G solvation = -18765.559024 eV Core-core repulsion = 16165.163284 eV Total energy + Delta-G solvation = -2600.395740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.34428 -38.35523 -35.05334 -33.39494 -32.31030 -31.90793 -29.26310 -27.56186 -25.93457 -24.40419 -22.93579 -22.55470 -20.98476 -20.94498 -18.39285 -17.20186 -16.74697 -16.21690 -15.81032 -15.64258 -15.41224 -14.99262 -14.68598 -14.33151 -13.92937 -13.83250 -13.28886 -13.02817 -12.95289 -12.82067 -12.72385 -12.55547 -12.46820 -12.35619 -12.10108 -12.01099 -11.83284 -11.75268 -11.47127 -11.22905 -11.07142 -10.78355 -10.40377 -9.21494 -8.81595 -8.09825 -6.21866 1.41233 1.42698 1.53253 2.42555 3.17061 3.33245 3.53145 3.89176 4.07576 4.15327 4.19331 4.32059 4.46016 4.58872 4.66169 4.67095 4.74756 4.76721 4.81029 4.82122 4.90059 4.99728 5.05860 5.08219 5.12305 5.14037 5.21513 5.27454 5.34918 5.40376 5.45285 5.56097 5.56718 5.73988 5.87131 6.23139 6.31313 6.47958 6.54746 6.79990 6.94841 7.47495 8.95135 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026778 B = 0.006999 C = 0.006400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.369461 B = 3999.796268 C = 4373.896212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.529 5.529 4 C 0.067 3.933 5 C -0.125 4.125 6 H 0.071 0.929 7 C -0.112 4.112 8 C -0.150 4.150 9 C 0.058 3.942 10 N -0.695 5.695 11 C 0.086 3.914 12 C 0.220 3.780 13 H -0.047 1.047 14 C -0.115 4.115 15 C -0.512 4.512 16 H 0.058 0.942 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.055 0.945 24 H 0.057 0.943 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.060 0.940 28 H 0.008 0.992 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.339 0.661 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.026 0.974 41 H 0.037 0.963 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.938 5.601 -6.988 14.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.076 4.076 3 N -0.253 5.253 4 C -0.062 4.062 5 C -0.146 4.146 6 H 0.090 0.910 7 C -0.150 4.150 8 C -0.189 4.189 9 C -0.071 4.071 10 N -0.322 5.322 11 C -0.044 4.044 12 C 0.112 3.888 13 H -0.029 1.029 14 C -0.172 4.172 15 C -0.551 4.551 16 H 0.076 0.924 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.193 1.193 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.029 0.971 27 H 0.079 0.921 28 H 0.027 0.973 29 H 0.092 0.908 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.156 0.844 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.045 0.955 41 H 0.056 0.944 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.718 5.797 -6.485 14.593 hybrid contribution 2.269 -1.001 -0.165 2.486 sum -9.449 4.796 -6.650 12.510 Atomic orbital electron populations 1.21695 0.93389 1.01743 1.01880 1.22012 0.96550 0.89632 0.99418 1.62131 1.19127 1.16439 1.27647 1.22047 0.98697 0.95388 0.90068 1.22155 1.00336 0.94774 0.97308 0.91048 1.21566 1.01237 0.96007 0.96162 1.22199 0.99168 0.95778 1.01742 1.22067 0.96526 0.99640 0.88888 1.60754 1.49412 1.03429 1.18648 1.21734 0.94592 0.88281 0.99778 1.19032 0.83035 0.92957 0.93730 1.02936 1.21767 1.01421 0.96908 0.97154 1.21412 0.92940 1.40411 1.00302 0.92401 1.25696 0.95738 0.95912 1.01485 1.70027 0.99191 1.48252 1.38747 0.85563 0.77682 0.78270 0.80170 1.20323 1.20987 1.19287 0.92591 0.92419 0.91393 0.97093 0.92146 0.97333 0.90839 0.93058 0.91391 0.90027 0.92836 0.90836 0.89719 0.84440 0.91600 0.91741 0.92693 0.95533 0.94419 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.90 71.98 0.71 -3.11 16 2 C 0.05 2.01 5.45 86.30 0.47 2.48 16 3 N -0.53 -22.10 3.67 -875.36 -3.21 -25.31 16 4 C 0.07 2.37 3.83 86.31 0.33 2.70 16 5 C -0.13 -3.90 1.98 -10.74 -0.02 -3.92 16 6 H 0.07 2.59 4.16 -2.39 -0.01 2.58 16 7 C -0.11 -2.82 5.29 30.67 0.16 -2.66 16 8 C -0.15 -3.18 6.08 30.65 0.19 -2.99 16 9 C 0.06 1.22 6.55 86.32 0.57 1.78 16 10 N -0.69 -18.18 6.87 -513.98 -3.53 -21.71 16 11 C 0.09 2.54 5.70 86.33 0.49 3.03 16 12 C 0.22 11.23 1.87 44.17 0.08 11.31 16 13 H -0.05 -2.74 8.14 -2.39 -0.02 -2.76 16 14 C -0.11 -5.60 7.36 71.98 0.53 -5.07 16 15 C -0.51 -28.29 7.71 25.60 0.20 -28.09 16 16 H 0.06 3.19 6.94 -2.91 -0.02 3.17 16 17 C 0.01 0.55 5.28 84.65 0.45 1.00 16 18 N -0.92 -53.64 11.30 21.45 0.24 -53.40 16 19 Si 0.96 44.06 29.54 68.60 2.03 46.08 16 20 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 24 H 0.06 1.53 6.74 -2.39 -0.02 1.51 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.01 0.42 8.06 -2.39 -0.02 0.40 16 27 H 0.06 2.63 6.25 -2.38 -0.01 2.61 16 28 H 0.01 0.33 7.51 -2.39 -0.02 0.31 16 29 H 0.07 2.29 6.25 -2.38 -0.01 2.28 16 30 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.34 8.98 8.86 -89.70 -0.79 8.18 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.06 2.26 7.74 -2.39 -0.02 2.24 16 39 H 0.05 3.01 5.92 -2.39 -0.01 3.00 16 40 H 0.03 1.17 5.98 -2.39 -0.01 1.16 16 41 H 0.04 1.77 7.23 -2.39 -0.02 1.76 16 42 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -59.27 311.05 -0.13 -59.40 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: 0.18 Total: 18.48 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 4.16 Total: -23.54 kcal Atomic # 7 Polarization: -93.93 SS G_CDS: -6.50 Total: -100.42 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -59.27 -0.13 -59.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233502243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.164 kcal (2) G-P(sol) polarization free energy of solvation -59.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds