Wall clock time and date at job start Mon Mar 30 2020 04:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46908 * 109.46841 * 2 1 4 4 C 1.46900 * 110.99820 * 72.47376 * 3 2 1 5 5 C 1.53004 * 109.46827 * 199.84772 * 4 3 2 6 6 C 1.46900 * 110.99811 * 196.42862 * 3 2 1 7 7 H 1.09001 * 110.27329 * 185.71246 * 6 3 2 8 8 C 1.54597 * 110.31008 * 307.90874 * 6 3 2 9 9 C 1.54932 * 102.92242 * 140.87460 * 8 6 3 10 10 N 1.48531 * 103.22931 * 322.58563 * 9 8 6 11 11 C 1.46898 * 111.00324 * 159.72267 * 10 9 8 12 12 H 1.09003 * 109.46824 * 297.60408 * 11 10 9 13 13 C 1.52999 * 109.47035 * 177.60270 * 11 10 9 14 14 C 1.50705 * 109.47170 * 57.60135 * 11 10 9 15 15 H 1.08004 * 119.99624 * 0.02562 * 14 11 10 16 16 C 1.37877 * 119.99990 * 179.72263 * 14 11 10 17 17 N 1.31512 * 119.99760 * 0.28180 * 16 14 11 18 18 Si 1.86797 * 119.99839 * 180.27547 * 16 14 11 19 19 H 1.48506 * 109.46854 * 90.00667 * 18 16 14 20 20 H 1.48500 * 109.46876 * 210.00053 * 18 16 14 21 21 H 1.48495 * 109.47373 * 330.00293 * 18 16 14 22 22 C 1.47899 * 105.81986 * 39.20687 * 10 9 8 23 23 H 1.09004 * 109.47578 * 59.99768 * 1 2 3 24 24 H 1.09000 * 109.46753 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46748 * 299.99484 * 1 2 3 26 26 H 1.09001 * 109.46748 * 240.00516 * 2 1 3 27 27 H 1.08992 * 109.47395 * 119.99816 * 2 1 3 28 28 H 1.08993 * 109.47326 * 319.85104 * 4 3 2 29 29 H 1.09000 * 109.47016 * 79.84993 * 4 3 2 30 30 H 1.08997 * 109.47063 * 294.77055 * 5 4 3 31 31 H 1.08998 * 109.46876 * 54.76891 * 5 4 3 32 32 H 1.08994 * 109.46895 * 174.76660 * 5 4 3 33 33 H 1.09003 * 110.72201 * 259.23381 * 8 6 3 34 34 H 1.08997 * 110.72486 * 22.33747 * 8 6 3 35 35 H 1.09010 * 110.66712 * 204.15165 * 9 8 6 36 36 H 1.09004 * 110.67071 * 81.02208 * 9 8 6 37 37 H 1.08995 * 109.47114 * 299.99788 * 13 11 10 38 38 H 1.08997 * 109.47030 * 60.00579 * 13 11 10 39 39 H 1.09002 * 109.46994 * 179.97438 * 13 11 10 40 40 H 0.97005 * 120.00023 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.91785 * 94.02245 * 22 10 9 42 42 H 1.09000 * 109.92017 * 215.12403 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.8057 2.0190 1.3078 5 6 1.8513 3.5403 1.1506 6 6 3.4353 1.4430 -0.3879 7 1 3.8133 2.4603 -0.2869 8 6 4.2690 0.4701 0.4774 9 6 5.2794 -0.1185 -0.5389 10 7 4.4738 -0.2542 -1.7794 11 6 5.3398 -0.3371 -2.9631 12 1 5.9126 0.5852 -3.0596 13 6 4.4786 -0.5357 -4.2121 14 6 6.2845 -1.5018 -2.8138 15 1 6.2451 -2.1189 -1.9283 16 6 7.1947 -1.7833 -3.8105 17 7 7.2422 -1.0320 -4.8888 18 14 8.3604 -3.2315 -3.6288 19 1 7.7312 -4.4483 -4.2024 20 1 9.6258 -2.9419 -4.3500 21 1 8.6509 -3.4558 -2.1899 22 6 3.6137 0.9477 -1.8351 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 0.8328 1.7233 1.7001 29 1 2.5875 1.7014 1.9977 30 1 2.8531 3.8443 0.8472 31 1 1.1324 3.8488 0.3916 32 1 1.6009 4.0114 2.1011 33 1 4.7885 1.0079 1.2705 34 1 3.6367 -0.3135 0.8948 35 1 5.6381 -1.0922 -0.2048 36 1 6.1125 0.5670 -0.6943 37 1 3.9059 -1.4581 -4.1156 38 1 3.7955 0.3067 -4.3201 39 1 5.1212 -0.5968 -5.0905 40 1 7.8829 -1.2298 -5.5899 41 1 4.0939 1.7205 -2.4354 42 1 2.6454 0.6918 -2.2651 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246096226.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:41 Heat of formation + Delta-G solvation = 8.263121 kcal Electronic energy + Delta-G solvation = -18499.806930 eV Core-core repulsion = 15900.777082 eV Total energy + Delta-G solvation = -2599.029848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38930 -36.48776 -33.40092 -31.74098 -31.04907 -29.18437 -27.78264 -26.48091 -24.92422 -22.88355 -21.94247 -21.36154 -19.45298 -18.67472 -16.47167 -15.96456 -15.59135 -14.92504 -14.49812 -14.23640 -14.01477 -13.39869 -13.04031 -12.54231 -12.49652 -12.26155 -12.08627 -11.74053 -11.66753 -11.35212 -11.25044 -11.05338 -10.95224 -10.90140 -10.67268 -10.61913 -10.37653 -10.18844 -10.03629 -9.96315 -9.73069 -8.83688 -8.40946 -8.04115 -7.23227 -5.99164 -4.03720 3.31647 3.37922 3.41011 4.05695 4.42877 4.95231 5.04184 5.16321 5.25314 5.30156 5.31248 5.40122 5.49012 5.58131 5.62728 5.72807 5.77485 5.88221 5.94340 6.02641 6.11009 6.16213 6.24746 6.27237 6.38423 6.47916 6.53056 6.65111 6.71379 6.87927 7.10664 7.14080 7.32350 7.39613 7.52804 7.68628 7.85095 8.18080 8.35676 8.59476 9.02828 9.61395 11.07672 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038065 B = 0.005667 C = 0.005591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.407214 B = 4940.081663 C = 5006.461450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.044 3.956 3 N -0.528 5.528 4 C 0.046 3.954 5 C -0.145 4.145 6 C 0.075 3.925 7 H 0.080 0.920 8 C -0.161 4.161 9 C 0.058 3.942 10 N -0.512 5.512 11 C 0.205 3.795 12 H -0.001 1.001 13 C -0.130 4.130 14 C -0.502 4.502 15 H 0.061 0.939 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.896 3.104 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.275 1.275 22 C 0.045 3.955 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.033 0.967 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.006 0.994 39 H 0.084 0.916 40 H 0.260 0.740 41 H 0.037 0.963 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 5.369 10.524 15.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 N -0.252 5.252 4 C -0.082 4.082 5 C -0.203 4.203 6 C -0.034 4.034 7 H 0.098 0.902 8 C -0.201 4.201 9 C -0.071 4.071 10 N -0.237 5.237 11 C 0.098 3.902 12 H 0.017 0.983 13 C -0.188 4.188 14 C -0.541 4.541 15 H 0.079 0.921 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.084 4.084 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.051 0.949 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.025 0.975 39 H 0.102 0.898 40 H 0.070 0.930 41 H 0.055 0.945 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.252 5.176 9.983 15.217 hybrid contribution 1.710 -0.451 0.558 1.854 sum -8.543 4.724 10.541 14.367 Atomic orbital electron populations 1.21788 0.95636 1.01014 1.01784 1.22158 0.94939 0.89114 1.02151 1.62266 1.17575 1.17553 1.27811 1.22083 1.00584 0.95139 0.90381 1.21750 1.02151 0.95149 1.01214 1.22655 0.86541 0.98527 0.95666 0.90232 1.23236 0.99141 0.99370 0.98320 1.22848 0.94175 0.99940 0.90129 1.64896 1.20744 1.34467 1.03614 1.19421 0.89251 0.96085 0.85428 0.98337 1.21764 0.98231 0.97259 1.01517 1.21134 1.16002 1.12753 1.04203 0.92115 1.24930 0.97414 0.96638 0.95253 1.69897 1.36501 1.38810 1.08066 0.86533 0.80221 0.82769 0.78078 1.20678 1.21359 1.20004 1.22831 0.99074 0.92654 0.93851 0.92115 0.92655 0.93417 0.88853 0.94930 0.91209 0.94818 0.92938 0.91958 0.92899 0.92380 0.90894 0.90661 0.94454 0.94806 0.97451 0.89781 0.93028 0.94478 0.90470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.98 37.16 0.37 -1.29 16 2 C 0.04 0.60 4.49 -3.82 -0.02 0.59 16 3 N -0.53 -7.31 4.31 -225.02 -0.97 -8.28 16 4 C 0.05 0.54 5.45 -3.82 -0.02 0.52 16 5 C -0.14 -1.52 9.95 37.16 0.37 -1.15 16 6 C 0.08 1.17 2.95 -66.35 -0.20 0.98 16 7 H 0.08 1.21 6.79 -51.93 -0.35 0.85 16 8 C -0.16 -2.54 5.50 -24.87 -0.14 -2.68 16 9 C 0.06 1.14 5.69 -1.90 -0.01 1.12 16 10 N -0.51 -11.07 5.10 -223.88 -1.14 -12.21 16 11 C 0.20 5.23 1.77 -68.86 -0.12 5.11 16 12 H 0.00 -0.03 7.96 -51.93 -0.41 -0.44 16 13 C -0.13 -3.24 8.95 37.16 0.33 -2.90 16 14 C -0.50 -13.85 8.07 -34.44 -0.28 -14.13 16 15 H 0.06 1.67 6.81 -52.48 -0.36 1.32 16 16 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 17 N -0.89 -25.68 11.31 55.43 0.63 -25.06 16 18 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.04 0.84 4.43 -2.75 -0.01 0.83 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.50 6.56 -51.93 -0.34 0.16 16 26 H 0.09 1.51 6.35 -51.93 -0.33 1.18 16 27 H 0.03 0.45 6.49 -51.93 -0.34 0.11 16 28 H 0.07 0.75 6.28 -51.93 -0.33 0.42 16 29 H 0.03 0.40 7.21 -51.93 -0.37 0.03 16 30 H 0.05 0.58 6.99 -51.93 -0.36 0.21 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.14 5.63 -51.93 -0.29 0.85 16 35 H 0.07 1.54 7.32 -51.92 -0.38 1.16 16 36 H 0.04 0.77 8.02 -51.93 -0.42 0.36 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.01 0.15 7.35 -51.93 -0.38 -0.23 16 39 H 0.08 2.29 6.06 -51.93 -0.31 1.97 16 40 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 41 H 0.04 0.74 7.65 -51.93 -0.40 0.34 16 42 H 0.08 1.46 6.92 -51.93 -0.36 1.10 16 LS Contribution 311.67 15.07 4.70 4.70 Total: -1.00 -27.95 311.67 -9.03 -36.99 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.41 Total: -1.11 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: 0.19 Total: -11.48 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: -1.48 Total: -45.54 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.95 -9.03 -36.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246096226.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.249 kcal (2) G-P(sol) polarization free energy of solvation -27.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds