Wall clock time and date at job start Mon Mar 30 2020 04:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46924 * 2 1 4 4 C 1.46904 * 110.99579 * 82.89676 * 3 2 1 5 5 C 1.52999 * 109.47177 * 286.72152 * 4 3 2 6 6 C 1.46898 * 110.99948 * 206.85049 * 3 2 1 7 7 H 1.08995 * 110.63074 * 46.04506 * 6 3 2 8 8 C 1.55140 * 110.70554 * 282.74663 * 6 3 2 9 9 C 1.54909 * 101.65325 * 205.96580 * 8 6 3 10 10 N 1.47848 * 104.79428 * 37.07153 * 9 8 6 11 11 C 1.46900 * 110.99841 * 213.63886 * 10 9 8 12 12 H 1.09002 * 109.47528 * 64.40112 * 11 10 9 13 13 C 1.53006 * 109.47213 * 304.40760 * 11 10 9 14 14 C 1.50694 * 109.47102 * 184.40822 * 11 10 9 15 15 H 1.08000 * 120.00447 * 359.97438 * 14 11 10 16 16 C 1.37886 * 120.00207 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99669 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00164 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46987 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47052 * 299.99679 * 18 16 14 21 21 H 1.48497 * 109.47102 * 59.99789 * 18 16 14 22 22 C 1.47444 * 108.56785 * 335.90569 * 10 9 8 23 23 H 1.09001 * 109.47037 * 57.86030 * 1 2 3 24 24 H 1.09001 * 109.46546 * 177.86042 * 1 2 3 25 25 H 1.08996 * 109.46930 * 297.85719 * 1 2 3 26 26 H 1.08995 * 109.47062 * 240.00382 * 2 1 3 27 27 H 1.08996 * 109.47319 * 119.99681 * 2 1 3 28 28 H 1.09000 * 109.47405 * 46.72253 * 4 3 2 29 29 H 1.09003 * 109.46936 * 166.72209 * 4 3 2 30 30 H 1.08995 * 109.47667 * 77.57855 * 5 4 3 31 31 H 1.09004 * 109.47068 * 197.58075 * 5 4 3 32 32 H 1.09001 * 109.47221 * 317.57460 * 5 4 3 33 33 H 1.09002 * 110.99111 * 324.05343 * 8 6 3 34 34 H 1.09001 * 110.99126 * 87.83400 * 8 6 3 35 35 H 1.08995 * 110.37093 * 278.24008 * 9 8 6 36 36 H 1.08997 * 110.37396 * 155.89673 * 9 8 6 37 37 H 1.09003 * 109.46793 * 54.99036 * 13 11 10 38 38 H 1.08990 * 109.47383 * 174.99773 * 13 11 10 39 39 H 1.09008 * 109.46779 * 294.99366 * 13 11 10 40 40 H 0.96993 * 119.99886 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.89112 * 120.39986 * 22 10 9 42 42 H 1.09007 * 109.88897 * 241.58525 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0352 1.9378 1.3610 5 6 0.6016 2.2275 1.8102 6 6 3.3487 1.4736 -0.6194 7 1 3.3766 0.9086 -1.5511 8 6 4.4446 0.9776 0.3603 9 6 5.6895 1.7475 -0.1469 10 7 5.1752 3.0743 -0.5481 11 6 5.9210 3.6022 -1.6983 12 1 5.7567 2.9602 -2.5636 13 6 7.4141 3.6372 -1.3655 14 6 5.4430 4.9970 -2.0096 15 1 4.6629 5.4463 -1.4130 16 6 6.0016 5.6998 -3.0562 17 7 6.9520 5.1529 -3.7824 18 14 5.4086 7.4285 -3.4425 19 1 6.1626 7.9622 -4.6051 20 1 3.9598 7.3939 -3.7665 21 1 5.6315 8.3033 -2.2634 22 6 3.7404 2.9463 -0.8624 23 1 -0.3633 0.5467 -0.8702 24 1 -0.3632 -1.0270 -0.0384 25 1 -0.3633 0.4802 0.9085 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4904 1.2174 2.0406 29 1 2.6129 2.8621 1.3711 30 1 0.1163 1.2956 2.1001 31 1 0.6181 2.9085 2.6611 32 1 0.0491 2.6849 0.9895 33 1 4.2054 1.2552 1.3868 34 1 4.5883 -0.0994 0.2727 35 1 6.1290 1.2361 -1.0033 36 1 6.4234 1.8508 0.6522 37 1 7.7402 2.6448 -1.0542 38 1 7.9758 3.9443 -2.2475 39 1 7.5897 4.3475 -0.5574 40 1 7.3448 5.6471 -4.5188 41 1 3.1583 3.5973 -0.2102 42 1 3.5643 3.2096 -1.9054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000246096229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:43 Heat of formation + Delta-G solvation = 15.130334 kcal Electronic energy + Delta-G solvation = -18451.027191 eV Core-core repulsion = 15852.295128 eV Total energy + Delta-G solvation = -2598.732063 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.37252 -36.71111 -33.48672 -31.32147 -31.04139 -29.37985 -28.35349 -26.08164 -24.93326 -22.95979 -21.83802 -21.37820 -19.23832 -19.21087 -16.36397 -15.94813 -15.55815 -15.18242 -14.77867 -14.12610 -13.76187 -13.11825 -12.88600 -12.65220 -12.58280 -12.42001 -12.22154 -11.88463 -11.76574 -11.47013 -11.31700 -11.12260 -10.87977 -10.71142 -10.60331 -10.55659 -10.31708 -10.19299 -10.03766 -9.91185 -9.69205 -8.89303 -8.38526 -8.07913 -7.11434 -5.96574 -4.00055 3.36267 3.39864 3.43532 4.01043 4.45613 4.96832 4.99790 5.09711 5.18045 5.31302 5.35713 5.37672 5.48515 5.51324 5.58379 5.68585 5.79947 5.81867 5.84681 5.91443 6.07298 6.14625 6.16381 6.29288 6.38818 6.40804 6.51254 6.67602 6.76856 6.87745 7.08064 7.10161 7.30235 7.38190 7.54651 7.72986 7.90015 8.22675 8.37250 8.62823 9.06526 9.64712 11.10633 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.006214 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.238249 B = 4505.089873 C = 5005.106169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.052 3.948 3 N -0.526 5.526 4 C 0.046 3.954 5 C -0.151 4.151 6 C 0.062 3.938 7 H 0.081 0.919 8 C -0.164 4.164 9 C 0.049 3.951 10 N -0.525 5.525 11 C 0.208 3.792 12 H -0.002 1.002 13 C -0.131 4.131 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.058 3.942 17 N -0.896 5.896 18 Si 0.896 3.104 19 H -0.289 1.289 20 H -0.278 1.278 21 H -0.277 1.277 22 C 0.065 3.935 23 H 0.060 0.940 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.059 0.941 35 H 0.037 0.963 36 H 0.066 0.934 37 H 0.007 0.993 38 H 0.081 0.919 39 H 0.034 0.966 40 H 0.260 0.740 41 H 0.069 0.931 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.063 -9.518 8.252 15.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.076 4.076 3 N -0.249 5.249 4 C -0.081 4.081 5 C -0.208 4.208 6 C -0.047 4.047 7 H 0.099 0.901 8 C -0.204 4.204 9 C -0.080 4.080 10 N -0.250 5.250 11 C 0.102 3.898 12 H 0.016 0.984 13 C -0.190 4.190 14 C -0.538 4.538 15 H 0.079 0.921 16 C -0.143 4.143 17 N -0.535 5.535 18 Si 0.724 3.276 19 H -0.214 1.214 20 H -0.203 1.203 21 H -0.203 1.203 22 C -0.063 4.063 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.026 0.974 38 H 0.100 0.900 39 H 0.053 0.947 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.201 -8.820 8.195 15.153 hybrid contribution 0.323 -0.174 -0.517 0.634 sum -8.878 -8.994 7.677 14.787 Atomic orbital electron populations 1.22118 0.95332 1.00841 1.03292 1.22076 0.96044 0.89160 1.00327 1.62126 1.24628 1.18730 1.19451 1.22206 0.97321 1.00261 0.88330 1.22049 0.96816 1.00905 1.01054 1.23172 0.86114 0.98999 0.96448 0.90072 1.23413 0.97404 0.99105 1.00443 1.22839 0.95879 0.90346 0.98912 1.63747 1.01722 1.20467 1.39061 1.19435 0.90407 0.94815 0.85134 0.98426 1.21828 0.98757 0.96587 1.01790 1.21078 1.20144 0.99058 1.13528 0.92092 1.24931 0.95103 0.98168 0.96070 1.69893 1.26289 1.37535 1.19794 0.86585 0.78731 0.84570 0.77667 1.21435 1.20330 1.20257 1.22642 0.89980 0.92418 1.01295 0.92065 0.93233 0.91409 0.91667 0.94902 0.94894 0.89741 0.92696 0.92807 0.91513 0.90689 0.92253 0.94454 0.91566 0.97398 0.90006 0.94672 0.93020 0.91265 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.73 37.16 0.36 -1.27 16 2 C 0.05 0.62 5.52 -3.82 -0.02 0.60 16 3 N -0.53 -7.42 4.40 -224.47 -0.99 -8.41 16 4 C 0.05 0.61 4.14 -3.82 -0.02 0.59 16 5 C -0.15 -1.66 8.57 37.16 0.32 -1.35 16 6 C 0.06 1.01 2.95 -65.89 -0.19 0.81 16 7 H 0.08 1.34 7.74 -51.93 -0.40 0.94 16 8 C -0.16 -2.51 6.13 -24.59 -0.15 -2.66 16 9 C 0.05 0.90 5.26 -2.30 -0.01 0.89 16 10 N -0.52 -11.48 5.02 -224.67 -1.13 -12.61 16 11 C 0.21 5.34 1.62 -68.86 -0.11 5.23 16 12 H 0.00 -0.05 8.13 -51.93 -0.42 -0.47 16 13 C -0.13 -3.27 8.81 37.16 0.33 -2.94 16 14 C -0.50 -13.91 7.84 -34.44 -0.27 -14.18 16 15 H 0.06 1.71 7.57 -52.49 -0.40 1.31 16 16 C 0.06 1.63 5.30 -17.81 -0.09 1.53 16 17 N -0.90 -25.85 11.37 55.43 0.63 -25.22 16 18 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.07 1.30 5.58 -2.83 -0.02 1.28 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.67 4.43 -51.93 -0.23 0.44 16 26 H 0.06 0.78 7.58 -51.93 -0.39 0.39 16 27 H 0.03 0.38 7.62 -51.93 -0.40 -0.02 16 28 H 0.03 0.42 6.53 -51.93 -0.34 0.08 16 29 H 0.08 1.26 6.16 -51.93 -0.32 0.94 16 30 H 0.05 0.54 5.84 -51.93 -0.30 0.24 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 1.12 5.76 -51.93 -0.30 0.82 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.04 0.72 7.44 -51.93 -0.39 0.33 16 36 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 37 H 0.01 0.16 6.65 -51.93 -0.35 -0.19 16 38 H 0.08 2.21 6.22 -51.93 -0.32 1.89 16 39 H 0.03 0.87 8.14 -51.92 -0.42 0.45 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.07 1.38 6.31 -51.93 -0.33 1.05 16 42 H 0.06 1.44 7.18 -51.92 -0.37 1.07 16 LS Contribution 309.53 15.07 4.66 4.66 Total: -1.00 -28.28 309.53 -9.07 -37.35 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: -7.35 Total: -0.99 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: 0.12 Total: -11.45 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: -1.49 Total: -46.23 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.28 -9.07 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246096229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.476 kcal (2) G-P(sol) polarization free energy of solvation -28.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds