Wall clock time and date at job start Mon Mar 30 2020 04:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46904 * 109.46924 * 2 1 4 4 C 1.46904 * 110.99579 * 82.89676 * 3 2 1 5 5 C 1.52999 * 109.47177 * 286.72152 * 4 3 2 6 6 C 1.46898 * 110.99948 * 206.85049 * 3 2 1 7 7 H 1.08995 * 110.63074 * 46.04506 * 6 3 2 8 8 C 1.55140 * 110.70554 * 282.74663 * 6 3 2 9 9 C 1.54909 * 101.65325 * 205.96580 * 8 6 3 10 10 N 1.47848 * 104.79428 * 37.07153 * 9 8 6 11 11 C 1.46900 * 110.99841 * 213.63886 * 10 9 8 12 12 H 1.09002 * 109.47528 * 64.40112 * 11 10 9 13 13 C 1.53006 * 109.47213 * 304.40760 * 11 10 9 14 14 C 1.50694 * 109.47102 * 184.40822 * 11 10 9 15 15 H 1.08000 * 120.00447 * 359.97438 * 14 11 10 16 16 C 1.37886 * 120.00207 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99669 * 359.97438 * 16 14 11 18 18 Si 1.86796 * 120.00164 * 179.97438 * 16 14 11 19 19 H 1.48498 * 109.46987 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.47052 * 299.99679 * 18 16 14 21 21 H 1.48497 * 109.47102 * 59.99789 * 18 16 14 22 22 C 1.47444 * 108.56785 * 335.90569 * 10 9 8 23 23 H 1.09001 * 109.47037 * 57.86030 * 1 2 3 24 24 H 1.09001 * 109.46546 * 177.86042 * 1 2 3 25 25 H 1.08996 * 109.46930 * 297.85719 * 1 2 3 26 26 H 1.08995 * 109.47062 * 240.00382 * 2 1 3 27 27 H 1.08996 * 109.47319 * 119.99681 * 2 1 3 28 28 H 1.09000 * 109.47405 * 46.72253 * 4 3 2 29 29 H 1.09003 * 109.46936 * 166.72209 * 4 3 2 30 30 H 1.08995 * 109.47667 * 77.57855 * 5 4 3 31 31 H 1.09004 * 109.47068 * 197.58075 * 5 4 3 32 32 H 1.09001 * 109.47221 * 317.57460 * 5 4 3 33 33 H 1.09002 * 110.99111 * 324.05343 * 8 6 3 34 34 H 1.09001 * 110.99126 * 87.83400 * 8 6 3 35 35 H 1.08995 * 110.37093 * 278.24008 * 9 8 6 36 36 H 1.08997 * 110.37396 * 155.89673 * 9 8 6 37 37 H 1.09003 * 109.46793 * 54.99036 * 13 11 10 38 38 H 1.08990 * 109.47383 * 174.99773 * 13 11 10 39 39 H 1.09008 * 109.46779 * 294.99366 * 13 11 10 40 40 H 0.96993 * 119.99886 * 179.97438 * 17 16 14 41 41 H 1.08993 * 109.89112 * 120.39986 * 22 10 9 42 42 H 1.09007 * 109.88897 * 241.58525 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.0352 1.9378 1.3610 5 6 0.6016 2.2275 1.8102 6 6 3.3487 1.4736 -0.6194 7 1 3.3766 0.9086 -1.5511 8 6 4.4446 0.9776 0.3603 9 6 5.6895 1.7475 -0.1469 10 7 5.1752 3.0743 -0.5481 11 6 5.9210 3.6022 -1.6983 12 1 5.7567 2.9602 -2.5636 13 6 7.4141 3.6372 -1.3655 14 6 5.4430 4.9970 -2.0096 15 1 4.6629 5.4463 -1.4130 16 6 6.0016 5.6998 -3.0562 17 7 6.9520 5.1529 -3.7824 18 14 5.4086 7.4285 -3.4425 19 1 6.1626 7.9622 -4.6051 20 1 3.9598 7.3939 -3.7665 21 1 5.6315 8.3033 -2.2634 22 6 3.7404 2.9463 -0.8624 23 1 -0.3633 0.5467 -0.8702 24 1 -0.3632 -1.0270 -0.0384 25 1 -0.3633 0.4802 0.9085 26 1 1.8933 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 2.4904 1.2174 2.0406 29 1 2.6129 2.8621 1.3711 30 1 0.1163 1.2956 2.1001 31 1 0.6181 2.9085 2.6611 32 1 0.0491 2.6849 0.9895 33 1 4.2054 1.2552 1.3868 34 1 4.5883 -0.0994 0.2727 35 1 6.1290 1.2361 -1.0033 36 1 6.4234 1.8508 0.6522 37 1 7.7402 2.6448 -1.0542 38 1 7.9758 3.9443 -2.2475 39 1 7.5897 4.3475 -0.5574 40 1 7.3448 5.6471 -4.5188 41 1 3.1583 3.5973 -0.2102 42 1 3.5643 3.2096 -1.9054 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000246096229.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:42 Heat of formation + Delta-G solvation = -3.448645 kcal Electronic energy + Delta-G solvation = -18451.832836 eV Core-core repulsion = 15852.295128 eV Total energy + Delta-G solvation = -2599.537708 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.74340 -38.14168 -35.35953 -33.00001 -31.97878 -30.76458 -30.01149 -27.63650 -26.92034 -23.96178 -23.35148 -22.70862 -21.03746 -20.47911 -18.26478 -17.42009 -17.16251 -16.43746 -16.08807 -15.68257 -15.27385 -14.93124 -14.24224 -13.96366 -13.67324 -13.61201 -13.58182 -13.41768 -13.20149 -12.89571 -12.73040 -12.57242 -12.38248 -12.33040 -12.27984 -12.20824 -11.91850 -11.69635 -11.59589 -11.46020 -11.05188 -10.97150 -10.52923 -9.19095 -8.90697 -8.11696 -6.22835 1.41358 1.43270 1.51005 2.42279 2.88567 3.16838 3.44662 3.76261 3.87212 3.98910 4.15327 4.28276 4.41245 4.49553 4.52555 4.58401 4.67257 4.70614 4.76684 4.83574 4.88079 4.92876 4.97109 5.01026 5.04934 5.08693 5.13245 5.17242 5.24434 5.28052 5.41692 5.46794 5.58374 5.72093 5.77016 6.15533 6.26486 6.28203 6.41315 6.69837 6.90646 7.46087 8.94388 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.006214 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.238249 B = 4505.089873 C = 5005.106169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.051 3.949 3 N -0.535 5.535 4 C 0.047 3.953 5 C -0.144 4.144 6 C 0.074 3.926 7 H 0.076 0.924 8 C -0.146 4.146 9 C 0.044 3.956 10 N -0.534 5.534 11 C 0.215 3.785 12 H -0.038 1.038 13 C -0.119 4.119 14 C -0.517 4.517 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.921 5.921 18 Si 0.959 3.041 19 H -0.282 1.282 20 H -0.273 1.273 21 H -0.271 1.271 22 C 0.069 3.931 23 H 0.048 0.952 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.189 -10.413 9.688 17.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 N -0.259 5.259 4 C -0.081 4.081 5 C -0.202 4.202 6 C -0.037 4.037 7 H 0.094 0.906 8 C -0.186 4.186 9 C -0.084 4.084 10 N -0.259 5.259 11 C 0.108 3.892 12 H -0.020 1.020 13 C -0.177 4.177 14 C -0.555 4.555 15 H 0.070 0.930 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.784 3.216 19 H -0.207 1.207 20 H -0.199 1.199 21 H -0.197 1.197 22 C -0.059 4.059 23 H 0.067 0.933 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.047 0.953 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.340 -9.729 9.648 17.165 hybrid contribution 0.653 0.068 -0.947 1.153 sum -9.687 -9.661 8.700 16.213 Atomic orbital electron populations 1.22078 0.94034 1.01949 1.03014 1.22163 0.97046 0.87628 1.00843 1.62118 1.23022 1.20603 1.20179 1.22219 0.98507 0.99383 0.87963 1.21996 0.95280 1.01951 1.00945 1.22905 0.87901 0.95869 0.96976 0.90588 1.23317 0.94831 1.00072 1.00365 1.22931 0.97602 0.89034 0.98821 1.63654 1.02455 1.22845 1.36992 1.19203 0.91305 0.93475 0.85252 1.02041 1.21637 0.98002 0.97703 1.00348 1.21319 1.20124 1.00256 1.13838 0.93015 1.25706 0.95197 1.01971 0.95859 1.70016 1.27064 1.38922 1.20085 0.85597 0.78342 0.79954 0.77664 1.20716 1.19872 1.19652 1.22522 0.89099 0.95402 0.98898 0.93300 0.91361 0.90804 0.91808 0.93647 0.93743 0.92055 0.90975 0.91805 0.92592 0.89672 0.89659 0.95320 0.90694 0.94943 0.92420 0.95231 0.92922 0.91573 0.95342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.73 71.98 0.70 -2.06 16 2 C 0.05 1.08 5.52 86.30 0.48 1.55 16 3 N -0.54 -14.29 4.40 -864.08 -3.80 -18.09 16 4 C 0.05 1.13 4.14 86.30 0.36 1.49 16 5 C -0.14 -2.85 8.57 71.98 0.62 -2.24 16 6 C 0.07 2.33 2.95 46.10 0.14 2.46 16 7 H 0.08 2.49 7.74 -2.39 -0.02 2.47 16 8 C -0.15 -4.16 6.13 31.98 0.20 -3.96 16 9 C 0.04 1.60 5.26 86.77 0.46 2.06 16 10 N -0.53 -23.71 5.02 -864.74 -4.34 -28.06 16 11 C 0.21 11.36 1.62 44.17 0.07 11.44 16 12 H -0.04 -2.23 8.13 -2.39 -0.02 -2.25 16 13 C -0.12 -6.01 8.81 71.98 0.63 -5.37 16 14 C -0.52 -29.59 7.84 25.60 0.20 -29.39 16 15 H 0.05 2.98 7.57 -2.91 -0.02 2.96 16 16 C 0.01 0.64 5.30 84.66 0.45 1.08 16 17 N -0.92 -54.28 11.37 21.45 0.24 -54.03 16 18 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 22 C 0.07 2.83 5.58 86.65 0.48 3.32 16 23 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.23 4.43 -2.39 -0.01 1.22 16 26 H 0.06 1.38 7.58 -2.39 -0.02 1.36 16 27 H 0.05 0.87 7.62 -2.39 -0.02 0.85 16 28 H 0.04 0.98 6.53 -2.39 -0.02 0.97 16 29 H 0.06 1.78 6.16 -2.39 -0.01 1.76 16 30 H 0.07 1.18 5.84 -2.39 -0.01 1.17 16 31 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 2.28 5.76 -2.39 -0.01 2.27 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.09 7.44 -2.39 -0.02 1.07 16 36 H 0.07 2.57 8.12 -2.39 -0.02 2.55 16 37 H 0.03 1.42 6.65 -2.39 -0.02 1.41 16 38 H 0.06 3.19 6.22 -2.39 -0.01 3.17 16 39 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 40 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 41 H 0.07 2.71 6.31 -2.39 -0.02 2.70 16 42 H 0.03 1.34 7.18 -2.38 -0.02 1.32 16 Total: -1.00 -61.71 309.53 -0.13 -61.84 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 0.97 Total: 10.98 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 4.78 Total: -19.62 kcal Atomic # 7 Polarization: -92.28 SS G_CDS: -7.90 Total: -100.18 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -61.71 -0.13 -61.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000246096229.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.390 kcal (2) G-P(sol) polarization free energy of solvation -61.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds