Wall clock time and date at job start Mon Mar 30 2020 03:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46902 * 109.46838 * 2 1 4 4 C 1.48070 * 110.99904 * 69.13754 * 3 2 1 5 5 C 1.53707 * 112.46885 * 192.19748 * 4 3 2 6 6 C 1.53004 * 108.95360 * 79.22989 * 5 4 3 7 7 C 1.52999 * 108.95258 * 197.87963 * 5 4 3 8 8 C 1.50797 * 112.09876 * 318.55613 * 5 4 3 9 9 N 1.47906 * 108.49559 * 92.55157 * 8 5 4 10 10 C 1.46900 * 111.00029 * 153.77512 * 9 8 5 11 11 C 1.40010 * 114.07145 * 280.06553 * 9 8 5 12 12 C 1.44575 * 110.99944 * 301.44643 * 3 2 1 13 13 H 1.09008 * 109.57511 * 100.53594 * 12 3 2 14 14 C 1.50698 * 109.57333 * 340.15960 * 12 3 2 15 15 H 1.07998 * 119.99890 * 355.06462 * 14 12 3 16 16 C 1.37880 * 119.99956 * 175.06776 * 14 12 3 17 17 N 1.31517 * 120.00184 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99824 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47225 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47002 * 120.00117 * 18 16 14 21 21 H 1.48504 * 109.46812 * 239.99746 * 18 16 14 22 22 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47270 * 299.99970 * 1 2 3 24 24 H 1.08998 * 109.47442 * 60.00399 * 1 2 3 25 25 H 1.08998 * 109.47270 * 240.00030 * 2 1 3 26 26 H 1.08998 * 109.47442 * 119.99601 * 2 1 3 27 27 H 1.08998 * 108.88222 * 71.43117 * 4 3 2 28 28 H 1.08996 * 108.88341 * 312.96688 * 4 3 2 29 29 H 1.09006 * 109.46904 * 35.48744 * 6 5 4 30 30 H 1.08997 * 109.46576 * 155.48524 * 6 5 4 31 31 H 1.09003 * 109.47070 * 275.48786 * 6 5 4 32 32 H 1.08997 * 109.46988 * 60.00256 * 7 5 4 33 33 H 1.09008 * 109.46584 * 180.02562 * 7 5 4 34 34 H 1.08997 * 109.47081 * 299.99666 * 7 5 4 35 35 H 1.09000 * 109.63129 * 212.25300 * 8 5 4 36 36 H 1.08999 * 109.63428 * 332.65260 * 8 5 4 37 37 H 1.08999 * 109.47356 * 59.99967 * 10 9 8 38 38 H 1.09004 * 109.47431 * 179.97438 * 10 9 8 39 39 H 1.09001 * 109.47605 * 300.00190 * 10 9 8 40 40 H 1.08995 * 108.96476 * 182.47934 * 11 9 8 41 41 H 1.09004 * 108.96274 * 301.22815 * 11 9 8 42 42 H 0.96996 * 119.99758 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7323 2.0494 1.2917 5 6 1.9530 3.5694 1.2324 6 6 0.7434 4.2212 0.5594 7 6 2.0765 4.1096 2.6585 8 6 3.1972 3.9324 0.4616 9 7 2.8226 4.1687 -0.9496 10 6 3.7692 5.0851 -1.5992 11 6 2.6611 2.9985 -1.7012 12 6 1.5284 2.1082 -1.1515 13 1 0.6837 2.7316 -0.8582 14 6 1.0935 1.1313 -2.2133 15 1 1.2523 0.0726 -2.0707 16 6 0.4930 1.5891 -3.3670 17 7 0.2992 2.8783 -3.5405 18 14 -0.0468 0.3781 -4.6829 19 1 0.2813 -1.0036 -4.2487 20 1 -1.5120 0.4965 -4.8935 21 1 0.6618 0.6788 -5.9529 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3835 1.6281 2.0576 28 1 0.6957 1.8539 1.5661 29 1 -0.1621 3.6826 0.8391 30 1 0.6633 5.2591 0.8828 31 1 0.8673 4.1864 -0.5230 32 1 2.9222 3.6341 3.1552 33 1 2.2328 5.1879 2.6263 34 1 1.1619 3.8918 3.2100 35 1 3.6364 4.8377 0.8805 36 1 3.9161 3.1153 0.5208 37 1 4.7700 4.6540 -1.5707 38 1 3.4707 5.2413 -2.6358 39 1 3.7699 6.0398 -1.0732 40 1 2.4307 3.2685 -2.7318 41 1 3.5936 2.4344 -1.6832 42 1 -0.1236 3.2003 -4.3519 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250328570.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:14 Heat of formation + Delta-G solvation = 44.351215 kcal Electronic energy + Delta-G solvation = -19734.282641 eV Core-core repulsion = 17136.817691 eV Total energy + Delta-G solvation = -2597.464951 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.54895 -35.93844 -34.69289 -32.35900 -29.60085 -28.10595 -26.62755 -26.32908 -25.35017 -24.33078 -22.42447 -20.95292 -18.79126 -17.96392 -16.50375 -15.56025 -14.96837 -14.39284 -14.31389 -14.00463 -13.46704 -13.06891 -12.88829 -12.52940 -12.47223 -12.02644 -11.82958 -11.61449 -11.49153 -11.09470 -10.97997 -10.78031 -10.71174 -10.63740 -10.51281 -10.12014 -10.00410 -9.96056 -9.70666 -9.58378 -9.37796 -8.51506 -8.44035 -7.10140 -6.80693 -6.01157 -4.01933 3.28062 3.37320 3.40137 4.40758 4.89141 5.04427 5.30062 5.35518 5.58138 5.73195 5.97540 6.01691 6.02311 6.04827 6.12584 6.19705 6.22171 6.31791 6.34192 6.41730 6.45153 6.46277 6.55422 6.69691 6.70381 6.86200 6.89629 6.93128 7.02392 7.07821 7.37864 7.50203 7.61444 7.82015 7.97167 8.08841 8.12572 8.41637 8.49271 8.83469 9.07073 9.59359 11.05206 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024530 B = 0.010676 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.196292 B = 2621.980718 C = 3282.967041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 N -0.552 5.552 4 C 0.073 3.927 5 C -0.061 4.061 6 C -0.150 4.150 7 C -0.135 4.135 8 C 0.081 3.919 9 N -0.542 5.542 10 C 0.035 3.965 11 C 0.083 3.917 12 C 0.206 3.794 13 H 0.050 0.950 14 C -0.523 4.523 15 H 0.075 0.925 16 C 0.062 3.938 17 N -0.879 5.879 18 Si 0.885 3.115 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.285 1.285 22 H 0.033 0.967 23 H 0.032 0.968 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.036 0.964 27 H 0.049 0.951 28 H 0.027 0.973 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.122 0.878 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.040 0.960 37 H 0.011 0.989 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.090 0.910 41 H -0.005 1.005 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.238 1.670 7.363 8.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.055 4.055 3 N -0.276 5.276 4 C -0.055 4.055 5 C -0.062 4.062 6 C -0.207 4.207 7 C -0.193 4.193 8 C -0.046 4.046 9 N -0.265 5.265 10 C -0.113 4.113 11 C -0.046 4.046 12 C 0.099 3.901 13 H 0.067 0.933 14 C -0.561 4.561 15 H 0.093 0.907 16 C -0.141 4.141 17 N -0.517 5.517 18 Si 0.714 3.286 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.058 0.942 37 H 0.029 0.971 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.013 0.987 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.222 1.997 7.173 8.113 hybrid contribution -0.393 -0.977 -0.647 1.236 sum 2.828 1.021 6.526 7.186 Atomic orbital electron populations 1.22738 0.98682 1.00323 1.03572 1.21868 0.93008 0.90741 0.99850 1.61073 1.61901 1.02347 1.02255 1.22395 0.97996 0.92616 0.92485 1.20300 0.97064 0.94657 0.94183 1.22413 0.94449 0.97430 1.06436 1.21917 1.00865 1.00243 0.96317 1.21674 0.95479 0.98610 0.88873 1.59373 1.47081 1.18299 1.01770 1.22248 0.93331 0.96055 0.99686 1.21203 0.97119 0.87773 0.98534 1.19456 0.92406 0.92124 0.86117 0.93286 1.21766 1.38115 0.94022 1.02230 0.90681 1.24977 0.96058 0.94985 0.98030 1.69986 1.42741 1.12252 1.26743 0.86637 0.78249 0.81667 0.82082 1.19787 1.21175 1.21148 0.94758 0.94913 0.87913 0.89996 0.94570 0.93293 0.95508 0.95002 0.94874 0.86022 0.93347 0.92928 0.93157 0.92747 0.94166 0.97095 0.91834 0.92947 0.89167 0.98726 0.93083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.90 9.00 37.16 0.33 -3.57 16 2 C 0.07 1.48 5.49 -3.82 -0.02 1.46 16 3 N -0.55 -11.84 4.12 -227.63 -0.94 -12.78 16 4 C 0.07 1.38 4.36 -2.81 -0.01 1.37 16 5 C -0.06 -1.08 0.72 -155.24 -0.11 -1.20 16 6 C -0.15 -2.94 7.07 37.16 0.26 -2.68 16 7 C -0.14 -1.93 7.97 37.16 0.30 -1.64 16 8 C 0.08 1.48 4.65 -4.37 -0.02 1.46 16 9 N -0.54 -11.10 2.55 -248.09 -0.63 -11.73 16 10 C 0.04 0.62 9.45 60.06 0.57 1.19 16 11 C 0.08 1.96 4.14 -6.75 -0.03 1.93 16 12 C 0.21 4.92 1.17 -69.48 -0.08 4.84 16 13 H 0.05 1.28 4.29 -51.92 -0.22 1.06 16 14 C -0.52 -13.39 5.41 -34.44 -0.19 -13.57 16 15 H 0.08 1.91 4.52 -52.49 -0.24 1.67 16 16 C 0.06 1.63 5.18 -17.82 -0.09 1.54 16 17 N -0.88 -24.00 11.84 55.43 0.66 -23.35 16 18 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 19 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.03 0.62 6.43 -51.93 -0.33 0.29 16 24 H 0.10 2.39 5.29 -51.93 -0.27 2.11 16 25 H 0.08 1.76 5.84 -51.93 -0.30 1.46 16 26 H 0.04 0.66 8.09 -51.93 -0.42 0.24 16 27 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 28 H 0.03 0.52 5.63 -51.93 -0.29 0.23 16 29 H 0.03 0.62 7.54 -51.93 -0.39 0.23 16 30 H 0.03 0.59 7.90 -51.93 -0.41 0.18 16 31 H 0.12 2.81 4.00 -51.93 -0.21 2.61 16 32 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 33 H 0.05 0.70 8.00 -51.92 -0.42 0.29 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.89 7.34 -51.93 -0.38 0.50 16 36 H 0.04 0.78 7.59 -51.93 -0.39 0.39 16 37 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.06 1.15 7.89 -51.93 -0.41 0.74 16 39 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 40 H 0.09 2.38 6.03 -51.93 -0.31 2.06 16 41 H -0.01 -0.13 8.07 -51.93 -0.42 -0.55 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 295.29 15.07 4.45 4.45 Total: -1.00 -26.21 295.29 -7.66 -33.87 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.08 Total: 2.80 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 0.91 Total: -8.85 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.91 Total: -47.85 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.21 -7.66 -33.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250328570.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.221 kcal (2) G-P(sol) polarization free energy of solvation -26.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds