Wall clock time and date at job start Mon Mar 30 2020 03:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 111.00041 * 2 1 4 4 C 1.52999 * 109.47098 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47345 * 180.12786 * 4 3 2 6 6 H 1.08999 * 109.45557 * 57.01386 * 5 4 3 7 7 C 1.53046 * 109.46182 * 297.04404 * 5 4 3 8 8 C 1.53121 * 109.27469 * 180.80375 * 7 5 4 9 9 C 1.53117 * 109.16172 * 57.65449 * 8 7 5 10 10 C 1.53028 * 109.28091 * 302.34215 * 9 8 7 11 11 N 1.46841 * 109.46686 * 176.99040 * 5 4 3 12 12 C 1.46906 * 110.99925 * 305.85837 * 11 5 4 13 13 H 1.08995 * 109.46923 * 55.34693 * 12 11 5 14 14 C 1.53002 * 109.46533 * 295.34885 * 12 11 5 15 15 C 1.50696 * 109.47059 * 175.35282 * 12 11 5 16 16 H 1.08000 * 120.00549 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00022 * 180.02562 * 15 12 11 18 18 N 1.31514 * 119.99786 * 359.97438 * 17 15 12 19 19 Si 1.86800 * 120.00377 * 180.02562 * 17 15 12 20 20 H 1.48496 * 109.47046 * 179.97438 * 19 17 15 21 21 H 1.48506 * 109.46817 * 299.99381 * 19 17 15 22 22 H 1.48497 * 109.47174 * 59.99203 * 19 17 15 23 23 H 1.09002 * 109.46554 * 300.00019 * 1 2 3 24 24 H 1.09000 * 109.47132 * 59.99717 * 1 2 3 25 25 H 1.09005 * 109.47209 * 180.02562 * 1 2 3 26 26 H 1.00903 * 111.00025 * 123.96176 * 2 1 3 27 27 H 1.09000 * 109.47122 * 60.00200 * 3 2 1 28 28 H 1.09003 * 109.47691 * 300.00366 * 3 2 1 29 29 H 1.09003 * 109.47162 * 60.12932 * 4 3 2 30 30 H 1.08997 * 109.47613 * 300.13189 * 4 3 2 31 31 H 1.08995 * 109.50031 * 60.86143 * 7 5 4 32 32 H 1.09003 * 109.53486 * 300.76422 * 7 5 4 33 33 H 1.08994 * 109.52335 * 297.74513 * 8 7 5 34 34 H 1.09006 * 109.51909 * 177.55963 * 8 7 5 35 35 H 1.09007 * 109.50004 * 182.40175 * 9 8 7 36 36 H 1.09001 * 109.49968 * 62.28811 * 9 8 7 37 37 H 1.09004 * 109.46336 * 299.16800 * 10 9 8 38 38 H 1.08994 * 109.45662 * 179.18954 * 10 9 8 39 39 H 1.08995 * 109.46851 * 59.63908 * 14 12 11 40 40 H 1.09004 * 109.46570 * 179.63333 * 14 12 11 41 41 H 1.08992 * 109.47283 * 299.63466 * 14 12 11 42 42 H 0.97000 * 120.00223 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5249 1.3305 -0.0006 5 6 4.0733 2.7589 0.0026 6 1 3.6814 3.2963 0.8661 7 6 3.6431 3.4731 -1.2808 8 6 4.2108 4.8952 -1.2824 9 6 5.7354 4.8278 -1.1577 10 6 6.1049 4.0744 0.1219 11 7 5.5394 2.7200 0.0746 12 6 5.9891 1.9213 1.2227 13 1 5.5495 0.9255 1.1670 14 6 5.5488 2.6014 2.5207 15 6 7.4917 1.8093 1.1990 16 1 8.0562 2.2835 0.4098 17 6 8.1458 1.1004 2.1842 18 7 7.4583 0.5225 3.1450 19 14 10.0084 0.9621 2.1553 20 1 10.4629 0.1546 3.3158 21 1 10.4363 0.3030 0.8952 22 1 10.6068 2.3189 2.2321 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8307 -0.5262 0.7813 27 1 1.6460 1.8947 0.8900 28 1 1.6460 1.8948 -0.8899 29 1 3.8741 0.8093 -0.8920 30 1 3.8748 0.8050 0.8879 31 1 2.5549 3.5156 -1.3263 32 1 4.0225 2.9288 -2.1456 33 1 3.8007 5.4521 -0.4400 34 1 3.9431 5.3932 -2.2144 35 1 6.1420 5.8383 -1.1154 36 1 6.1482 4.3047 -2.0203 37 1 5.7034 4.6056 0.9850 38 1 7.1899 4.0122 0.2062 39 1 4.4624 2.6882 2.5348 40 1 5.8768 2.0054 3.3724 41 1 5.9936 3.5947 2.5794 42 1 7.9185 0.0241 3.8384 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251447055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:25 Heat of formation + Delta-G solvation = -26.561105 kcal Electronic energy + Delta-G solvation = -18562.632996 eV Core-core repulsion = 15962.093056 eV Total energy + Delta-G solvation = -2600.539940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.50923 -37.28572 -36.01102 -33.91055 -33.38528 -29.96104 -29.37509 -27.32237 -25.87272 -25.00153 -23.72808 -22.21349 -21.50301 -19.93561 -18.18623 -17.20094 -16.97161 -16.29718 -15.77571 -15.46147 -15.37470 -14.94359 -14.83244 -14.50800 -14.14306 -13.88971 -13.46887 -13.45244 -12.89293 -12.87255 -12.69213 -12.60269 -12.50187 -12.32610 -12.20481 -11.97993 -11.87386 -11.70534 -11.46903 -11.17128 -10.78092 -10.71958 -10.37373 -9.41183 -8.74960 -8.08673 -6.18299 1.42519 1.43982 1.51392 2.43985 3.17729 3.20816 3.49679 3.93516 4.06397 4.13709 4.22027 4.32070 4.44823 4.54268 4.57817 4.60734 4.67848 4.71374 4.75444 4.80566 4.87545 4.94096 5.01824 5.08416 5.12402 5.13248 5.19525 5.24729 5.34184 5.38837 5.43717 5.58506 5.61973 5.77006 5.85003 6.07360 6.26489 6.37976 6.57992 6.87626 6.96886 7.50498 8.97257 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020310 B = 0.007653 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1378.281064 B = 3657.962221 C = 4705.477905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.710 5.710 3 C 0.071 3.929 4 C -0.103 4.103 5 C 0.088 3.912 6 H 0.020 0.980 7 C -0.105 4.105 8 C -0.114 4.114 9 C -0.112 4.112 10 C 0.064 3.936 11 N -0.535 5.535 12 C 0.214 3.786 13 H 0.020 0.980 14 C -0.154 4.154 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.956 3.044 20 H -0.285 1.285 21 H -0.274 1.274 22 H -0.273 1.273 23 H 0.023 0.977 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.341 0.659 27 H 0.024 0.976 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.013 0.987 38 H 0.056 0.944 39 H 0.020 0.980 40 H 0.059 0.941 41 H 0.024 0.976 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.005 5.422 -6.784 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.340 5.340 3 C -0.058 4.058 4 C -0.141 4.141 5 C -0.022 4.022 6 H 0.038 0.962 7 C -0.142 4.142 8 C -0.151 4.151 9 C -0.150 4.150 10 C -0.065 4.065 11 N -0.259 5.259 12 C 0.107 3.893 13 H 0.037 0.963 14 C -0.214 4.214 15 C -0.553 4.553 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.782 3.218 20 H -0.211 1.211 21 H -0.199 1.199 22 H -0.198 1.198 23 H 0.042 0.958 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.158 0.842 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.031 0.969 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.043 0.957 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.768 5.018 -7.748 14.184 hybrid contribution 0.749 0.229 2.254 2.386 sum -10.020 5.247 -5.494 12.574 Atomic orbital electron populations 1.22245 0.86535 1.02625 1.00686 1.60424 1.08965 1.14298 1.50336 1.21923 0.93683 0.89585 1.00617 1.21526 0.94763 0.96309 1.01550 1.21542 0.88287 0.95247 0.97091 0.96221 1.21649 1.00403 0.95683 0.96496 1.21556 0.94871 0.96493 1.02229 1.21600 0.96854 0.99504 0.96993 1.21929 0.99348 0.88747 0.96437 1.62168 1.07133 1.13053 1.43580 1.19082 0.94044 0.91759 0.84422 0.96261 1.22170 0.96269 0.99427 1.03514 1.21395 0.92516 1.32099 1.09275 0.92779 1.25661 1.02480 0.95338 0.95227 1.70003 1.36670 1.35294 1.14116 0.85645 0.80652 0.78113 0.77407 1.21053 1.19888 1.19782 0.95848 0.91121 0.90405 0.84202 0.95771 0.89604 0.92059 0.94049 0.90076 0.91834 0.92555 0.89822 0.90626 0.91977 0.96911 0.92552 0.96083 0.92226 0.95652 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.70 127.69 1.37 1.93 16 2 N -0.71 -18.66 6.86 -537.14 -3.68 -22.35 16 3 C 0.07 1.97 5.40 86.30 0.47 2.44 16 4 C -0.10 -3.62 4.65 30.59 0.14 -3.48 16 5 C 0.09 3.11 1.49 44.94 0.07 3.18 16 6 H 0.02 0.75 6.71 -2.39 -0.02 0.73 16 7 C -0.10 -2.92 5.06 30.65 0.16 -2.76 16 8 C -0.11 -2.90 6.00 30.67 0.18 -2.72 16 9 C -0.11 -3.35 6.09 30.64 0.19 -3.16 16 10 C 0.06 2.51 4.67 86.32 0.40 2.91 16 11 N -0.54 -23.03 4.47 -850.40 -3.80 -26.84 16 12 C 0.21 10.95 1.95 44.17 0.09 11.04 16 13 H 0.02 1.11 5.87 -2.39 -0.01 1.09 16 14 C -0.15 -7.70 8.27 71.98 0.60 -7.11 16 15 C -0.51 -28.72 7.86 25.60 0.20 -28.52 16 16 H 0.05 3.03 6.74 -2.91 -0.02 3.01 16 17 C 0.01 0.63 5.30 84.65 0.45 1.07 16 18 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 19 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 20 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.34 9.14 8.82 -89.69 -0.79 8.35 16 27 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.09 2.11 6.53 -2.39 -0.02 2.09 16 29 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.04 1.70 6.05 -2.39 -0.01 1.69 16 31 H 0.08 1.87 6.55 -2.39 -0.02 1.85 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 35 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 36 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.01 0.52 6.63 -2.38 -0.02 0.50 16 38 H 0.06 2.48 6.32 -2.39 -0.02 2.47 16 39 H 0.02 0.94 6.62 -2.39 -0.02 0.92 16 40 H 0.06 3.29 6.08 -2.39 -0.01 3.28 16 41 H 0.02 1.22 6.55 -2.39 -0.02 1.21 16 42 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -60.64 310.16 -0.72 -61.36 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.19 Total: 19.87 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.30 Total: -25.18 kcal Atomic # 7 Polarization: -95.25 SS G_CDS: -7.24 Total: -102.49 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -60.64 -0.72 -61.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251447055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.797 kcal (2) G-P(sol) polarization free energy of solvation -60.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds