Wall clock time and date at job start Mon Mar 30 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.52992 * 109.47261 * 239.99515 * 2 1 3 5 5 N 1.46900 * 109.47186 * 64.99877 * 4 2 1 6 6 C 1.46901 * 111.00555 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.50288 * 223.62785 * 6 5 4 8 8 C 1.52992 * 117.50047 * 155.00127 * 6 5 4 9 9 C 1.53007 * 109.46680 * 119.99665 * 2 1 3 10 10 N 1.46901 * 109.46497 * 185.39788 * 9 2 1 11 11 C 1.46903 * 111.00335 * 75.85310 * 10 9 2 12 12 C 1.46909 * 110.99679 * 199.80292 * 10 9 2 13 13 H 1.08997 * 109.47051 * 55.00447 * 12 10 9 14 14 C 1.52999 * 109.46884 * 295.00155 * 12 10 9 15 15 C 1.50700 * 109.47021 * 175.00110 * 12 10 9 16 16 H 1.08004 * 119.99927 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99844 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00323 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00034 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47030 * 89.99871 * 19 17 15 21 21 H 1.48491 * 109.46982 * 209.99814 * 19 17 15 22 22 H 1.48499 * 109.46919 * 329.99897 * 19 17 15 23 23 H 1.09002 * 109.47129 * 304.50706 * 1 2 3 24 24 H 1.08997 * 109.47006 * 64.49837 * 1 2 3 25 25 H 1.08999 * 109.47866 * 184.50488 * 1 2 3 26 26 H 1.08999 * 109.47591 * 185.00594 * 4 2 1 27 27 H 1.08999 * 109.47129 * 305.00440 * 4 2 1 28 28 H 1.00910 * 110.99790 * 56.04661 * 5 4 2 29 29 H 1.09003 * 115.54177 * 9.33823 * 6 5 4 30 30 H 1.08995 * 117.49589 * 0.02562 * 7 6 5 31 31 H 1.09001 * 117.49701 * 145.02031 * 7 6 5 32 32 H 1.09002 * 117.49915 * 214.98384 * 8 6 5 33 33 H 1.08999 * 117.49928 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47287 * 305.39886 * 9 2 1 35 35 H 1.09002 * 109.46888 * 65.40185 * 9 2 1 36 36 H 1.09008 * 109.47082 * 54.09686 * 11 10 9 37 37 H 1.08994 * 109.47388 * 174.10325 * 11 10 9 38 38 H 1.09003 * 109.46755 * 294.10665 * 11 10 9 39 39 H 1.08997 * 109.47515 * 300.00008 * 14 12 10 40 40 H 1.09004 * 109.47192 * 60.00320 * 14 12 10 41 41 H 1.09003 * 109.46610 * 179.97438 * 14 12 10 42 42 H 0.96997 * 120.00480 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0372 -2.4456 6 6 2.1257 -0.6267 -3.6671 7 6 2.7536 0.2522 -4.7507 8 6 1.3629 -0.3490 -4.9639 9 6 2.0399 -0.7212 1.2494 10 7 3.5031 -0.6094 1.3162 11 6 3.9091 0.7331 1.7533 12 6 4.0705 -1.6425 2.1931 13 1 3.7392 -2.6254 1.8581 14 6 3.5989 -1.4075 3.6295 15 6 5.5751 -1.5748 2.1409 16 1 6.0612 -0.8378 1.5189 17 6 6.3309 -2.4538 2.8872 18 7 5.7390 -3.3510 3.6450 19 14 8.1960 -2.3695 2.8231 20 1 8.6861 -1.4430 3.8751 21 1 8.7609 -3.7233 3.0534 22 1 8.6236 -1.8750 1.4897 23 1 -0.3633 0.5822 0.8469 24 1 -0.3633 0.4424 -0.9275 25 1 -0.3635 -1.0244 0.0807 26 1 3.1263 -0.7996 -1.2055 27 1 1.6053 -1.7198 -1.2950 28 1 1.9882 0.9872 -2.3967 29 1 2.5365 -1.6269 -3.5291 30 1 2.8151 1.3231 -4.5570 31 1 3.5779 -0.1696 -5.3259 32 1 1.2722 -1.1663 -5.6794 33 1 0.5088 0.3261 -4.9106 34 1 1.5997 -0.2662 2.1367 35 1 1.7576 -1.7730 1.2023 36 1 3.4136 0.9743 2.6938 37 1 4.9895 0.7578 1.8951 38 1 3.6253 1.4632 0.9954 39 1 3.9301 -0.4246 3.9645 40 1 2.5106 -1.4565 3.6673 41 1 4.0195 -2.1743 4.2800 42 1 6.2708 -3.9692 4.1703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251566236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:26 Heat of formation + Delta-G solvation = 21.052998 kcal Electronic energy + Delta-G solvation = -17876.978777 eV Core-core repulsion = 15278.503540 eV Total energy + Delta-G solvation = -2598.475237 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.28492 -37.31927 -34.96458 -32.59161 -31.11411 -28.56581 -26.50455 -25.20855 -24.80065 -23.23254 -22.37590 -21.15312 -19.84750 -18.95314 -16.17614 -16.00355 -15.34499 -15.23179 -14.52501 -14.26000 -14.10465 -13.54787 -13.08039 -12.72970 -12.48639 -12.24894 -11.88756 -11.61955 -11.54804 -11.41312 -11.19906 -11.04365 -10.90857 -10.73175 -10.60293 -10.56927 -10.39807 -10.25155 -10.02845 -9.95471 -9.66395 -8.83865 -8.38450 -8.06643 -7.10875 -6.00354 -4.04010 3.30300 3.37147 3.40900 3.83581 4.20244 4.41555 4.92177 4.98373 5.02515 5.19708 5.24396 5.31505 5.50363 5.61672 5.68082 5.74883 5.89545 5.97710 6.05669 6.06691 6.11104 6.18133 6.28041 6.33373 6.46773 6.47382 6.60446 6.69427 6.71829 6.85528 6.93066 7.15977 7.23192 7.49069 7.52635 7.73565 7.84687 8.14920 8.41456 8.63098 9.02164 9.61011 11.06730 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.005610 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.802763 B = 4990.128581 C = 5758.909415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.081 4.081 3 H 0.064 0.936 4 C 0.070 3.930 5 N -0.660 5.660 6 C 0.029 3.971 7 C -0.209 4.209 8 C -0.176 4.176 9 C 0.060 3.940 10 N -0.534 5.534 11 C 0.035 3.965 12 C 0.210 3.790 13 H 0.038 0.962 14 C -0.171 4.171 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.043 0.957 24 H 0.063 0.937 25 H 0.048 0.952 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.338 0.662 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.012 0.988 37 H 0.074 0.926 38 H 0.039 0.961 39 H 0.028 0.972 40 H 0.006 0.994 41 H 0.086 0.914 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.964 6.409 -10.222 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.100 4.100 3 H 0.082 0.918 4 C -0.058 4.058 5 N -0.290 5.290 6 C -0.082 4.082 7 C -0.248 4.248 8 C -0.214 4.214 9 C -0.069 4.069 10 N -0.258 5.258 11 C -0.114 4.114 12 C 0.104 3.896 13 H 0.056 0.944 14 C -0.230 4.230 15 C -0.538 4.538 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 H 0.062 0.938 24 H 0.082 0.918 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.156 0.844 29 H 0.126 0.874 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.045 0.955 35 H 0.082 0.918 36 H 0.031 0.969 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.047 0.953 40 H 0.025 0.975 41 H 0.105 0.895 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.351 5.885 -10.574 14.703 hybrid contribution 1.628 0.309 0.952 1.911 sum -6.722 6.194 -9.622 13.272 Atomic orbital electron populations 1.21729 0.95391 1.01282 1.01220 1.21103 0.94942 0.99459 0.94525 0.91806 1.21984 0.99780 0.96599 0.87441 1.60325 1.62242 1.05505 1.00903 1.22412 1.01028 0.98329 0.86429 1.23384 0.96848 0.99590 1.04969 1.23085 0.95087 1.03370 0.99898 1.22073 0.90182 0.99720 0.94974 1.62286 1.06461 1.04046 1.52972 1.22244 1.02026 0.90630 0.96451 1.19321 0.94309 0.89610 0.86352 0.94437 1.22398 0.95887 1.01501 1.03199 1.21126 0.90399 1.16743 1.25506 0.92020 1.24925 0.98552 0.95360 0.95444 1.69886 1.35070 1.19723 1.28705 0.86550 0.85654 0.77182 0.78329 1.20849 1.21308 1.19913 0.93829 0.91846 0.93244 0.92588 0.91587 0.84371 0.87399 0.88938 0.89012 0.89112 0.88728 0.95474 0.91779 0.96913 0.90704 0.94187 0.95279 0.97479 0.89496 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.13 37.16 0.34 -1.46 16 2 C -0.08 -1.20 2.59 -90.62 -0.23 -1.43 16 3 H 0.06 0.95 6.89 -51.93 -0.36 0.59 16 4 C 0.07 1.04 4.87 -3.83 -0.02 1.02 16 5 N -0.66 -8.46 6.16 -106.73 -0.66 -9.12 16 6 C 0.03 0.35 6.31 -67.72 -0.43 -0.08 16 7 C -0.21 -2.18 10.23 -26.73 -0.27 -2.45 16 8 C -0.18 -1.82 10.46 -26.73 -0.28 -2.10 16 9 C 0.06 1.07 3.53 -3.82 -0.01 1.06 16 10 N -0.53 -11.18 4.06 -236.27 -0.96 -12.14 16 11 C 0.04 0.68 8.49 60.07 0.51 1.19 16 12 C 0.21 5.24 2.30 -68.86 -0.16 5.08 16 13 H 0.04 1.03 7.95 -51.93 -0.41 0.62 16 14 C -0.17 -4.14 8.32 37.16 0.31 -3.83 16 15 C -0.50 -13.53 7.80 -34.44 -0.27 -13.79 16 16 H 0.06 1.68 6.82 -52.48 -0.36 1.32 16 17 C 0.06 1.59 5.30 -17.82 -0.09 1.50 16 18 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.80 7.63 -51.93 -0.40 0.40 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.97 7.63 -51.93 -0.40 0.57 16 27 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.34 4.11 8.52 -39.29 -0.33 3.78 16 29 H 0.11 1.35 7.90 -51.93 -0.41 0.94 16 30 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 31 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 34 H 0.03 0.49 7.24 -51.93 -0.38 0.12 16 35 H 0.06 1.19 7.81 -51.93 -0.41 0.79 16 36 H 0.01 0.24 6.68 -51.92 -0.35 -0.10 16 37 H 0.07 1.58 6.28 -51.93 -0.33 1.26 16 38 H 0.04 0.68 7.00 -51.93 -0.36 0.31 16 39 H 0.03 0.68 6.61 -51.93 -0.34 0.34 16 40 H 0.01 0.14 7.00 -51.93 -0.36 -0.22 16 41 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 42 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 325.02 15.07 4.90 4.90 Total: -1.00 -27.27 325.02 -9.32 -36.59 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.60 Total: 3.60 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: -0.61 Total: -15.29 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: -0.99 Total: -46.06 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.27 -9.32 -36.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251566236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.646 kcal (2) G-P(sol) polarization free energy of solvation -27.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds