Wall clock time and date at job start Mon Mar 30 2020 03:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47313 * 2 1 4 4 C 1.52992 * 109.47261 * 239.99515 * 2 1 3 5 5 N 1.46900 * 109.47186 * 64.99877 * 4 2 1 6 6 C 1.46901 * 111.00555 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.50288 * 223.62785 * 6 5 4 8 8 C 1.52992 * 117.50047 * 155.00127 * 6 5 4 9 9 C 1.53007 * 109.46680 * 119.99665 * 2 1 3 10 10 N 1.46901 * 109.46497 * 185.39788 * 9 2 1 11 11 C 1.46903 * 111.00335 * 75.85310 * 10 9 2 12 12 C 1.46909 * 110.99679 * 199.80292 * 10 9 2 13 13 H 1.08997 * 109.47051 * 55.00447 * 12 10 9 14 14 C 1.52999 * 109.46884 * 295.00155 * 12 10 9 15 15 C 1.50700 * 109.47021 * 175.00110 * 12 10 9 16 16 H 1.08004 * 119.99927 * 0.02562 * 15 12 10 17 17 C 1.37872 * 119.99844 * 180.02562 * 15 12 10 18 18 N 1.31516 * 120.00323 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 120.00034 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.47030 * 89.99871 * 19 17 15 21 21 H 1.48491 * 109.46982 * 209.99814 * 19 17 15 22 22 H 1.48499 * 109.46919 * 329.99897 * 19 17 15 23 23 H 1.09002 * 109.47129 * 304.50706 * 1 2 3 24 24 H 1.08997 * 109.47006 * 64.49837 * 1 2 3 25 25 H 1.08999 * 109.47866 * 184.50488 * 1 2 3 26 26 H 1.08999 * 109.47591 * 185.00594 * 4 2 1 27 27 H 1.08999 * 109.47129 * 305.00440 * 4 2 1 28 28 H 1.00910 * 110.99790 * 56.04661 * 5 4 2 29 29 H 1.09003 * 115.54177 * 9.33823 * 6 5 4 30 30 H 1.08995 * 117.49589 * 0.02562 * 7 6 5 31 31 H 1.09001 * 117.49701 * 145.02031 * 7 6 5 32 32 H 1.09002 * 117.49915 * 214.98384 * 8 6 5 33 33 H 1.08999 * 117.49928 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47287 * 305.39886 * 9 2 1 35 35 H 1.09002 * 109.46888 * 65.40185 * 9 2 1 36 36 H 1.09008 * 109.47082 * 54.09686 * 11 10 9 37 37 H 1.08994 * 109.47388 * 174.10325 * 11 10 9 38 38 H 1.09003 * 109.46755 * 294.10665 * 11 10 9 39 39 H 1.08997 * 109.47515 * 300.00008 * 14 12 10 40 40 H 1.09004 * 109.47192 * 60.00320 * 14 12 10 41 41 H 1.09003 * 109.46610 * 179.97438 * 14 12 10 42 42 H 0.96997 * 120.00480 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 1.6514 0.0372 -2.4456 6 6 2.1257 -0.6267 -3.6671 7 6 2.7536 0.2522 -4.7507 8 6 1.3629 -0.3490 -4.9639 9 6 2.0399 -0.7212 1.2494 10 7 3.5031 -0.6094 1.3162 11 6 3.9091 0.7331 1.7533 12 6 4.0705 -1.6425 2.1931 13 1 3.7392 -2.6254 1.8581 14 6 3.5989 -1.4075 3.6295 15 6 5.5751 -1.5748 2.1409 16 1 6.0612 -0.8378 1.5189 17 6 6.3309 -2.4538 2.8872 18 7 5.7390 -3.3510 3.6450 19 14 8.1960 -2.3695 2.8231 20 1 8.6861 -1.4430 3.8751 21 1 8.7609 -3.7233 3.0534 22 1 8.6236 -1.8750 1.4897 23 1 -0.3633 0.5822 0.8469 24 1 -0.3633 0.4424 -0.9275 25 1 -0.3635 -1.0244 0.0807 26 1 3.1263 -0.7996 -1.2055 27 1 1.6053 -1.7198 -1.2950 28 1 1.9882 0.9872 -2.3967 29 1 2.5365 -1.6269 -3.5291 30 1 2.8151 1.3231 -4.5570 31 1 3.5779 -0.1696 -5.3259 32 1 1.2722 -1.1663 -5.6794 33 1 0.5088 0.3261 -4.9106 34 1 1.5997 -0.2662 2.1367 35 1 1.7576 -1.7730 1.2023 36 1 3.4136 0.9743 2.6938 37 1 4.9895 0.7578 1.8951 38 1 3.6253 1.4632 0.9954 39 1 3.9301 -0.4246 3.9645 40 1 2.5106 -1.4565 3.6673 41 1 4.0195 -2.1743 4.2800 42 1 6.2708 -3.9692 4.1703 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251566236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:26 Heat of formation + Delta-G solvation = 4.582030 kcal Electronic energy + Delta-G solvation = -17877.693012 eV Core-core repulsion = 15278.503540 eV Total energy + Delta-G solvation = -2599.189472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.62088 -38.57473 -36.34514 -34.46253 -32.34131 -30.40660 -28.01636 -27.17068 -26.08459 -24.84930 -23.19265 -22.12199 -21.45856 -20.46622 -18.20324 -17.03284 -16.99421 -16.47204 -16.11613 -15.64615 -15.48742 -15.12470 -14.52433 -14.28343 -13.83393 -13.51411 -13.34944 -13.10995 -12.97201 -12.78643 -12.65109 -12.59639 -12.38772 -12.32532 -12.29051 -12.06194 -11.98182 -11.59179 -11.45970 -11.31257 -11.07607 -10.84253 -10.49321 -9.11033 -8.79499 -8.10291 -6.20869 1.41666 1.42789 1.53068 2.42880 2.94097 3.18974 3.21065 3.44317 3.97902 4.05252 4.14708 4.24134 4.25683 4.46613 4.61342 4.65628 4.71445 4.74391 4.79569 4.82326 4.86577 4.89016 4.91864 4.96738 5.06408 5.14613 5.19758 5.22800 5.29529 5.31605 5.45030 5.52841 5.56649 5.72344 5.80360 6.15324 6.21304 6.48290 6.51425 6.78835 6.93760 7.48431 8.95968 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.005610 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.802763 B = 4990.128581 C = 5758.909415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.070 4.070 3 H 0.070 0.930 4 C 0.082 3.918 5 N -0.653 5.653 6 C 0.003 3.997 7 C -0.201 4.201 8 C -0.163 4.163 9 C 0.062 3.938 10 N -0.540 5.540 11 C 0.040 3.960 12 C 0.215 3.785 13 H 0.003 0.997 14 C -0.156 4.156 15 C -0.513 4.513 16 H 0.057 0.943 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.957 3.043 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.270 1.270 23 H 0.052 0.948 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.027 0.973 27 H 0.056 0.944 28 H 0.343 0.657 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.029 0.971 35 H 0.050 0.950 36 H 0.014 0.986 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.023 0.977 41 H 0.059 0.941 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.321 7.836 -11.316 16.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 H 0.088 0.912 4 C -0.047 4.047 5 N -0.283 5.283 6 C -0.107 4.107 7 C -0.239 4.239 8 C -0.201 4.201 9 C -0.067 4.067 10 N -0.263 5.263 11 C -0.108 4.108 12 C 0.108 3.892 13 H 0.021 0.979 14 C -0.216 4.216 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.188 4.188 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.195 1.195 23 H 0.072 0.928 24 H 0.091 0.909 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.074 0.926 28 H 0.162 0.838 29 H 0.115 0.885 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.120 0.880 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.078 0.922 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.719 7.330 -11.685 16.319 hybrid contribution 1.698 -0.136 1.249 2.113 sum -7.021 7.194 -10.436 14.490 Atomic orbital electron populations 1.21652 0.93550 1.01454 1.02119 1.20997 0.96255 0.99010 0.92682 0.91198 1.21750 0.97757 0.96578 0.88632 1.60324 1.62069 1.05522 1.00364 1.22465 1.03140 0.98354 0.86788 1.23438 0.97228 0.99687 1.03577 1.23130 0.95092 1.03517 0.98406 1.22121 0.88244 0.99523 0.96776 1.62205 1.08359 1.03873 1.51867 1.22216 1.00781 0.90275 0.97547 1.19070 0.93644 0.89337 0.87198 0.97932 1.22198 0.96719 1.00462 1.02190 1.21387 0.91728 1.16632 1.25356 0.92490 1.25685 1.02880 0.95049 0.95149 1.70016 1.36562 1.20300 1.29297 0.85564 0.80442 0.77196 0.78457 1.20155 1.21073 1.19480 0.92847 0.90945 0.93493 0.95482 0.92580 0.83840 0.88546 0.88261 0.88366 0.87955 0.88388 0.95239 0.93114 0.96728 0.92657 0.91232 0.95084 0.95813 0.92208 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.13 71.98 0.66 -2.45 16 2 C -0.07 -1.97 2.59 -10.79 -0.03 -2.00 16 3 H 0.07 1.91 6.89 -2.39 -0.02 1.89 16 4 C 0.08 2.39 4.87 86.30 0.42 2.81 16 5 N -0.65 -15.85 6.16 -491.59 -3.03 -18.88 16 6 C 0.00 0.08 6.31 44.91 0.28 0.36 16 7 C -0.20 -3.79 10.23 30.59 0.31 -3.47 16 8 C -0.16 -3.03 10.46 30.59 0.32 -2.71 16 9 C 0.06 2.20 3.53 86.31 0.31 2.50 16 10 N -0.54 -22.58 4.06 -901.41 -3.66 -26.24 16 11 C 0.04 1.52 8.49 127.69 1.08 2.61 16 12 C 0.21 10.92 2.30 44.17 0.10 11.03 16 13 H 0.00 0.16 7.95 -2.39 -0.02 0.14 16 14 C -0.16 -7.66 8.32 71.98 0.60 -7.06 16 15 C -0.51 -28.16 7.80 25.60 0.20 -27.96 16 16 H 0.06 3.12 6.82 -2.91 -0.02 3.10 16 17 C 0.01 0.59 5.30 84.65 0.45 1.04 16 18 N -0.92 -53.30 11.32 21.45 0.24 -53.06 16 19 Si 0.96 43.83 29.54 68.60 2.03 45.85 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.07 1.63 7.63 -2.39 -0.02 1.61 16 25 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.03 0.94 7.63 -2.39 -0.02 0.92 16 27 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.34 7.69 8.52 -89.69 -0.76 6.93 16 29 H 0.10 2.42 7.90 -2.39 -0.02 2.40 16 30 H 0.10 1.75 8.09 -2.39 -0.02 1.73 16 31 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.03 1.03 7.24 -2.39 -0.02 1.01 16 35 H 0.05 1.91 7.81 -2.39 -0.02 1.89 16 36 H 0.01 0.54 6.68 -2.38 -0.02 0.52 16 37 H 0.05 2.31 6.28 -2.39 -0.02 2.29 16 38 H 0.07 2.21 7.00 -2.39 -0.02 2.19 16 39 H 0.03 1.46 6.61 -2.39 -0.02 1.44 16 40 H 0.02 1.03 7.00 -2.38 -0.02 1.02 16 41 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 42 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -58.20 325.02 0.50 -57.71 By element: Atomic # 1 Polarization: 19.71 SS G_CDS: 0.21 Total: 19.92 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 4.71 Total: -25.30 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -6.45 Total: -98.18 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -58.20 0.50 -57.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251566236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.291 kcal (2) G-P(sol) polarization free energy of solvation -58.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds