Wall clock time and date at job start Mon Mar 30 2020 03:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.50696 * 109.47687 * 240.00195 * 2 1 3 5 5 H 1.08005 * 120.00148 * 240.00486 * 4 2 1 6 6 C 1.37880 * 120.00087 * 59.99117 * 4 2 1 7 7 N 1.31510 * 119.99616 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46636 * 120.00715 * 8 6 4 11 11 H 1.48493 * 109.47320 * 240.00230 * 8 6 4 12 12 N 1.46898 * 109.47139 * 119.99551 * 2 1 3 13 13 C 1.46898 * 111.00006 * 171.44646 * 12 2 1 14 14 C 1.46894 * 111.00216 * 295.40273 * 12 2 1 15 15 H 1.08998 * 108.77083 * 322.71852 * 14 12 2 16 16 C 1.50475 * 108.87725 * 81.23482 * 14 12 2 17 17 C 1.54241 * 108.52330 * 214.92517 * 16 14 12 18 18 C 1.45545 * 112.40611 * 280.01748 * 17 16 14 19 19 C 1.54238 * 112.40823 * 61.93454 * 18 17 16 20 20 C 1.50471 * 108.51533 * 280.01020 * 19 18 17 21 21 C 1.54063 * 112.49683 * 94.15674 * 20 19 18 22 22 H 1.08998 * 108.81571 * 79.14442 * 21 20 19 23 23 N 1.46900 * 108.81074 * 197.42182 * 21 20 19 24 24 H 1.09005 * 109.46744 * 188.60140 * 1 2 3 25 25 H 1.08994 * 109.47062 * 308.60381 * 1 2 3 26 26 H 1.09001 * 109.46703 * 68.60554 * 1 2 3 27 27 H 0.97007 * 119.99420 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47539 * 200.17590 * 13 12 2 29 29 H 1.09004 * 109.47621 * 320.17523 * 13 12 2 30 30 H 1.08999 * 109.47494 * 80.17132 * 13 12 2 31 31 H 1.09000 * 109.62871 * 334.63447 * 16 14 12 32 32 H 1.08997 * 109.63223 * 95.21439 * 16 14 12 33 33 H 1.09001 * 108.89913 * 159.25981 * 17 16 14 34 34 H 1.09005 * 108.81874 * 40.71650 * 17 16 14 35 35 H 1.08999 * 108.89151 * 301.18072 * 18 17 16 36 36 H 1.09003 * 108.89503 * 182.69120 * 18 17 16 37 37 H 1.09002 * 109.62627 * 160.30030 * 19 18 17 38 38 H 1.08992 * 109.79065 * 39.81498 * 19 18 17 39 39 H 1.09002 * 108.88059 * 333.37221 * 20 19 18 40 40 H 1.09006 * 108.79389 * 214.87876 * 20 19 18 41 41 H 1.00908 * 111.00009 * 303.28463 * 23 21 20 42 42 H 1.00894 * 111.00372 * 67.24554 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3216 -1.1203 -4.0079 9 1 3.1459 -2.2876 -3.6037 10 1 1.1663 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4737 -0.8912 1.1358 14 6 1.6405 0.0343 2.4185 15 1 1.7078 1.1047 2.2240 16 6 0.2175 -0.3088 2.7670 17 6 -0.4541 0.9415 3.3712 18 6 -0.1092 1.1343 4.7719 19 6 1.4028 1.3573 4.9799 20 6 2.0922 0.0202 4.9452 21 6 2.6274 -0.3308 3.5438 22 1 3.5618 0.2059 3.3798 23 7 2.8972 -1.7738 3.4876 24 1 -0.3633 -1.0162 0.1537 25 1 -0.3633 0.6412 0.8031 26 1 -0.3633 0.3749 -0.9569 27 1 0.7094 1.1616 -3.4844 28 1 3.7617 -1.6896 1.8198 29 1 3.7593 -1.1629 0.1196 30 1 3.9794 0.0314 1.4209 31 1 -0.3170 -0.6126 1.8669 32 1 0.2041 -1.1196 3.4954 33 1 -1.5357 0.8377 3.2850 34 1 -0.1379 1.8182 2.8059 35 1 -0.4169 0.2536 5.3356 36 1 -0.6494 2.0012 5.1524 37 1 1.5734 1.8323 5.9460 38 1 1.7949 1.9921 4.1854 39 1 1.3854 -0.7493 5.2557 40 1 2.9259 0.0367 5.6472 41 1 3.5422 -2.0496 4.2129 42 1 2.0409 -2.3042 3.5443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251716090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:37 Heat of formation + Delta-G solvation = 19.763910 kcal Electronic energy + Delta-G solvation = -19149.901355 eV Core-core repulsion = 16551.370219 eV Total energy + Delta-G solvation = -2598.531136 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.58170 -36.01779 -34.32013 -32.52160 -30.81375 -29.01919 -28.80926 -25.18657 -24.15245 -23.46341 -22.81415 -20.34450 -19.67380 -18.19738 -16.48166 -15.84667 -15.43567 -14.85560 -14.47603 -14.24292 -13.65125 -13.28092 -13.18643 -12.79758 -12.65420 -12.25149 -12.04412 -11.79491 -11.64145 -11.24716 -10.94723 -10.74537 -10.59044 -10.54091 -10.30814 -10.27254 -10.06370 -9.89977 -9.87135 -9.68407 -9.24924 -8.67451 -8.25220 -7.89092 -6.80769 -5.91116 -3.94938 3.34980 3.42633 3.47884 4.48351 4.74483 4.78582 4.93779 5.10468 5.25605 5.34870 5.40306 5.53300 5.56413 5.67120 5.74425 5.90277 6.06629 6.16988 6.24427 6.27079 6.28231 6.37169 6.50849 6.55725 6.70981 6.77196 6.89213 7.02315 7.05555 7.16276 7.31555 7.41807 7.54267 7.70720 7.79509 7.95159 7.98342 8.41914 8.57700 8.84107 9.15444 9.69575 11.14789 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.007174 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.088883 B = 3901.940371 C = 4426.622326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.209 3.791 3 H -0.009 1.009 4 C -0.497 4.497 5 H 0.066 0.934 6 C 0.055 3.945 7 N -0.895 5.895 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.519 5.519 13 C 0.016 3.984 14 C 0.098 3.902 15 H 0.030 0.970 16 C -0.124 4.124 17 C -0.122 4.122 18 C -0.111 4.111 19 C -0.115 4.115 20 C -0.146 4.146 21 C 0.093 3.907 22 H 0.070 0.930 23 N -0.818 5.818 24 H 0.033 0.967 25 H 0.017 0.983 26 H 0.081 0.919 27 H 0.257 0.743 28 H 0.099 0.901 29 H 0.064 0.936 30 H -0.012 1.012 31 H 0.103 0.897 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.051 0.949 41 H 0.324 0.676 42 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.055 -0.792 14.492 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.102 3.898 3 H 0.008 0.992 4 C -0.536 4.536 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.535 5.535 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.244 5.244 13 C -0.133 4.133 14 C -0.011 4.011 15 H 0.048 0.952 16 C -0.162 4.162 17 C -0.160 4.160 18 C -0.148 4.148 19 C -0.153 4.153 20 C -0.186 4.186 21 C -0.019 4.019 22 H 0.088 0.912 23 N -0.346 5.346 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.007 0.993 31 H 0.121 0.879 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.136 0.864 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.061 -1.008 13.615 13.653 hybrid contribution 0.243 0.592 0.073 0.644 sum 0.304 -0.416 13.689 13.698 Atomic orbital electron populations 1.22056 0.98270 0.98003 1.01171 1.19286 0.92155 0.91729 0.86587 0.99160 1.21315 1.30245 1.12144 0.89890 0.91610 1.24944 0.95416 0.95174 0.98957 1.69917 1.37303 1.23217 1.23015 0.86514 0.78553 0.79656 0.83123 1.19746 1.21156 1.21308 1.62199 1.12938 1.48271 1.00952 1.22890 0.87902 0.99392 1.03096 1.21359 0.93480 0.95522 0.90766 0.95171 1.21904 0.96279 0.95933 1.02047 1.20497 1.00157 0.99490 0.95846 1.20470 0.95768 1.00899 0.97702 1.21273 0.95562 0.97302 1.01202 1.22197 0.99868 0.98032 0.98463 1.22079 0.98192 0.89331 0.92276 0.91181 1.59252 1.18420 1.04161 1.52728 0.94815 0.96386 0.90019 0.93261 0.88286 0.91729 0.99317 0.87900 0.93260 0.92700 0.92260 0.92723 0.93006 0.92608 0.91529 0.92255 0.92976 0.86409 0.84494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 7.46 37.16 0.28 -3.09 16 2 C 0.21 5.39 2.00 -68.87 -0.14 5.25 16 3 H -0.01 -0.26 7.93 -51.93 -0.41 -0.68 16 4 C -0.50 -13.94 7.67 -34.44 -0.26 -14.21 16 5 H 0.07 1.86 6.25 -52.48 -0.33 1.53 16 6 C 0.06 1.56 5.27 -17.82 -0.09 1.47 16 7 N -0.89 -26.05 11.29 55.43 0.63 -25.43 16 8 Si 0.89 21.81 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 N -0.52 -11.30 4.25 -229.15 -0.97 -12.27 16 13 C 0.02 0.33 8.25 60.06 0.50 0.82 16 14 C 0.10 1.77 1.25 -68.42 -0.09 1.69 16 15 H 0.03 0.62 6.22 -51.93 -0.32 0.29 16 16 C -0.12 -2.05 4.27 -27.34 -0.12 -2.16 16 17 C -0.12 -1.76 4.70 -29.60 -0.14 -1.90 16 18 C -0.11 -1.34 5.26 -29.60 -0.16 -1.50 16 19 C -0.12 -1.38 5.60 -27.35 -0.15 -1.53 16 20 C -0.15 -1.74 4.84 -27.44 -0.13 -1.87 16 21 C 0.09 1.37 2.15 -66.60 -0.14 1.22 16 22 H 0.07 1.11 7.08 -51.93 -0.37 0.74 16 23 N -0.82 -11.16 5.83 -3.72 -0.02 -11.18 16 24 H 0.03 0.81 7.32 -51.93 -0.38 0.43 16 25 H 0.02 0.39 5.46 -51.93 -0.28 0.10 16 26 H 0.08 2.23 5.89 -51.93 -0.31 1.93 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.10 1.89 5.33 -51.93 -0.28 1.61 16 29 H 0.06 1.52 5.45 -51.93 -0.28 1.23 16 30 H -0.01 -0.25 7.08 -51.93 -0.37 -0.62 16 31 H 0.10 1.96 3.98 -51.93 -0.21 1.76 16 32 H 0.05 0.74 6.28 -51.93 -0.33 0.42 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.94 7.40 -51.93 -0.38 0.56 16 35 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.89 6.99 -51.93 -0.36 0.53 16 39 H 0.06 0.69 6.62 -51.93 -0.34 0.35 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.32 3.61 8.99 -39.29 -0.35 3.25 16 42 H 0.34 4.67 8.20 -39.30 -0.32 4.35 16 LS Contribution 291.78 15.07 4.40 4.40 Total: -1.00 -28.69 291.78 -8.48 -37.18 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.84 Total: 6.33 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -0.65 Total: -15.81 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: -0.37 Total: -48.88 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.69 -8.48 -37.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.942 kcal (2) G-P(sol) polarization free energy of solvation -28.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds