Wall clock time and date at job start Mon Mar 30 2020 03:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 109.47219 * 2 1 4 4 C 1.50696 * 109.47687 * 240.00195 * 2 1 3 5 5 H 1.08005 * 120.00148 * 240.00486 * 4 2 1 6 6 C 1.37880 * 120.00087 * 59.99117 * 4 2 1 7 7 N 1.31510 * 119.99616 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47255 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46636 * 120.00715 * 8 6 4 11 11 H 1.48493 * 109.47320 * 240.00230 * 8 6 4 12 12 N 1.46898 * 109.47139 * 119.99551 * 2 1 3 13 13 C 1.46898 * 111.00006 * 171.44646 * 12 2 1 14 14 C 1.46894 * 111.00216 * 295.40273 * 12 2 1 15 15 H 1.08998 * 108.77083 * 322.71852 * 14 12 2 16 16 C 1.50475 * 108.87725 * 81.23482 * 14 12 2 17 17 C 1.54241 * 108.52330 * 214.92517 * 16 14 12 18 18 C 1.45545 * 112.40611 * 280.01748 * 17 16 14 19 19 C 1.54238 * 112.40823 * 61.93454 * 18 17 16 20 20 C 1.50471 * 108.51533 * 280.01020 * 19 18 17 21 21 C 1.54063 * 112.49683 * 94.15674 * 20 19 18 22 22 H 1.08998 * 108.81571 * 79.14442 * 21 20 19 23 23 N 1.46900 * 108.81074 * 197.42182 * 21 20 19 24 24 H 1.09005 * 109.46744 * 188.60140 * 1 2 3 25 25 H 1.08994 * 109.47062 * 308.60381 * 1 2 3 26 26 H 1.09001 * 109.46703 * 68.60554 * 1 2 3 27 27 H 0.97007 * 119.99420 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47539 * 200.17590 * 13 12 2 29 29 H 1.09004 * 109.47621 * 320.17523 * 13 12 2 30 30 H 1.08999 * 109.47494 * 80.17132 * 13 12 2 31 31 H 1.09000 * 109.62871 * 334.63447 * 16 14 12 32 32 H 1.08997 * 109.63223 * 95.21439 * 16 14 12 33 33 H 1.09001 * 108.89913 * 159.25981 * 17 16 14 34 34 H 1.09005 * 108.81874 * 40.71650 * 17 16 14 35 35 H 1.08999 * 108.89151 * 301.18072 * 18 17 16 36 36 H 1.09003 * 108.89503 * 182.69120 * 18 17 16 37 37 H 1.09002 * 109.62627 * 160.30030 * 19 18 17 38 38 H 1.08992 * 109.79065 * 39.81498 * 19 18 17 39 39 H 1.09002 * 108.88059 * 333.37221 * 20 19 18 40 40 H 1.09006 * 108.79389 * 214.87876 * 20 19 18 41 41 H 1.00908 * 111.00009 * 303.28463 * 23 21 20 42 42 H 1.00894 * 111.00372 * 67.24554 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7103 -1.2304 5 1 2.6534 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6033 8 14 2.3216 -1.1203 -4.0079 9 1 3.1459 -2.2876 -3.6037 10 1 1.1663 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 7 2.0197 -0.6924 1.1995 13 6 3.4737 -0.8912 1.1358 14 6 1.6405 0.0343 2.4185 15 1 1.7078 1.1047 2.2240 16 6 0.2175 -0.3088 2.7670 17 6 -0.4541 0.9415 3.3712 18 6 -0.1092 1.1343 4.7719 19 6 1.4028 1.3573 4.9799 20 6 2.0922 0.0202 4.9452 21 6 2.6274 -0.3308 3.5438 22 1 3.5618 0.2059 3.3798 23 7 2.8972 -1.7738 3.4876 24 1 -0.3633 -1.0162 0.1537 25 1 -0.3633 0.6412 0.8031 26 1 -0.3633 0.3749 -0.9569 27 1 0.7094 1.1616 -3.4844 28 1 3.7617 -1.6896 1.8198 29 1 3.7593 -1.1629 0.1196 30 1 3.9794 0.0314 1.4209 31 1 -0.3170 -0.6126 1.8669 32 1 0.2041 -1.1196 3.4954 33 1 -1.5357 0.8377 3.2850 34 1 -0.1379 1.8182 2.8059 35 1 -0.4169 0.2536 5.3356 36 1 -0.6494 2.0012 5.1524 37 1 1.5734 1.8323 5.9460 38 1 1.7949 1.9921 4.1854 39 1 1.3854 -0.7493 5.2557 40 1 2.9259 0.0367 5.6472 41 1 3.5422 -2.0496 4.2129 42 1 2.0409 -2.3042 3.5443 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251716090.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:36 Heat of formation + Delta-G solvation = 0.293989 kcal Electronic energy + Delta-G solvation = -19150.745634 eV Core-core repulsion = 16551.370219 eV Total energy + Delta-G solvation = -2599.375415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.93540 -37.59185 -35.65126 -34.40518 -32.14613 -30.90756 -30.12037 -27.16134 -25.78911 -24.71250 -24.28528 -21.69638 -21.31005 -19.56213 -18.32011 -17.48073 -16.93707 -16.34212 -15.96886 -15.38655 -15.16686 -14.95929 -14.81424 -14.04565 -13.94885 -13.90915 -13.64327 -13.27322 -13.04768 -12.83461 -12.78048 -12.51563 -12.24445 -12.10822 -11.92926 -11.77035 -11.54434 -11.44181 -11.30584 -11.10075 -10.90246 -10.70814 -10.33244 -9.12658 -8.61036 -8.08029 -6.20043 1.40393 1.41688 1.54386 2.43537 3.18382 3.41116 3.70864 3.83029 3.95159 4.12997 4.16489 4.37847 4.42474 4.46228 4.55123 4.74825 4.80951 4.87617 4.93373 4.99617 5.08487 5.11648 5.11734 5.23256 5.27178 5.29307 5.34537 5.36015 5.48133 5.54210 5.57825 5.67275 5.70051 5.81655 5.98028 6.33244 6.40052 6.59748 6.81840 6.97535 7.03147 7.49324 8.97050 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.035431 B = 0.007174 C = 0.006324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.088883 B = 3901.940371 C = 4426.622326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.215 3.785 3 H -0.056 1.056 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.007 3.993 7 N -0.922 5.922 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.279 1.279 11 H -0.283 1.283 12 N -0.519 5.519 13 C 0.023 3.977 14 C 0.099 3.901 15 H 0.001 0.999 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.109 4.109 19 C -0.117 4.117 20 C -0.135 4.135 21 C 0.101 3.899 22 H 0.056 0.944 23 N -0.826 5.826 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.051 0.949 27 H 0.260 0.740 28 H 0.127 0.873 29 H 0.036 0.964 30 H -0.018 1.018 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.344 0.656 42 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.096 -1.989 16.475 16.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.107 3.893 3 H -0.039 1.039 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.191 4.191 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.242 5.242 13 C -0.125 4.125 14 C -0.010 4.010 15 H 0.019 0.981 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.175 4.175 21 C -0.011 4.011 22 H 0.074 0.926 23 N -0.357 5.357 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.145 0.855 29 H 0.054 0.946 30 H 0.001 0.999 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.062 0.938 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.158 0.842 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.108 -2.212 15.626 15.782 hybrid contribution 0.248 0.997 -0.511 1.147 sum 0.357 -1.215 15.115 15.168 Atomic orbital electron populations 1.21839 0.97366 0.98307 1.00145 1.19097 0.92801 0.89263 0.88123 1.03915 1.21583 1.30467 1.12179 0.91159 0.92148 1.25750 0.95539 0.95877 1.01968 1.70054 1.38076 1.24380 1.23753 0.85481 0.78141 0.78597 0.79262 1.19141 1.20442 1.20871 1.62211 1.13142 1.47930 1.00954 1.22921 0.87633 0.99980 1.01973 1.21468 0.95661 0.93426 0.90453 0.98134 1.21782 0.94721 0.97641 1.01530 1.20456 1.00425 0.97302 0.97221 1.20445 0.96053 1.02318 0.95859 1.21299 0.95385 0.97171 1.01631 1.22090 1.00838 0.98204 0.96395 1.21869 0.96526 0.89937 0.92737 0.92601 1.59016 1.19109 1.03438 1.54093 0.94488 0.94530 0.92998 0.93131 0.85541 0.94571 0.99912 0.90680 0.91066 0.91795 0.94654 0.91034 0.91598 0.90298 0.93784 0.91001 0.90910 0.84215 0.84091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 7.46 71.98 0.54 -5.50 16 2 C 0.21 11.55 2.00 44.17 0.09 11.64 16 3 H -0.06 -3.50 7.93 -2.39 -0.02 -3.52 16 4 C -0.52 -29.78 7.67 25.60 0.20 -29.58 16 5 H 0.06 3.49 6.25 -2.91 -0.02 3.47 16 6 C 0.01 0.37 5.27 84.66 0.45 0.82 16 7 N -0.92 -55.29 11.29 21.45 0.24 -55.05 16 8 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 12 N -0.52 -23.00 4.25 -878.90 -3.74 -26.74 16 13 C 0.02 0.99 8.25 127.69 1.05 2.05 16 14 C 0.10 3.59 1.25 44.46 0.06 3.64 16 15 H 0.00 0.03 6.22 -2.39 -0.01 0.02 16 16 C -0.12 -3.82 4.27 30.20 0.13 -3.69 16 17 C -0.12 -3.22 4.70 28.74 0.14 -3.09 16 18 C -0.11 -2.34 5.26 28.74 0.15 -2.19 16 19 C -0.12 -2.50 5.60 30.20 0.17 -2.33 16 20 C -0.14 -2.78 4.84 30.14 0.15 -2.64 16 21 C 0.10 2.81 2.15 45.64 0.10 2.91 16 22 H 0.06 1.72 7.08 -2.39 -0.02 1.70 16 23 N -0.83 -20.53 5.83 -165.69 -0.97 -21.50 16 24 H 0.04 1.81 7.32 -2.38 -0.02 1.79 16 25 H 0.04 1.66 5.46 -2.39 -0.01 1.65 16 26 H 0.05 2.94 5.89 -2.39 -0.01 2.93 16 27 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 28 H 0.13 4.70 5.33 -2.39 -0.01 4.69 16 29 H 0.04 1.73 5.45 -2.38 -0.01 1.72 16 30 H -0.02 -0.77 7.08 -2.39 -0.02 -0.79 16 31 H 0.07 2.85 3.98 -2.39 -0.01 2.84 16 32 H 0.07 1.96 6.28 -2.39 -0.02 1.95 16 33 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.14 7.40 -2.38 -0.02 1.12 16 35 H 0.07 1.34 7.47 -2.39 -0.02 1.32 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.04 1.15 6.99 -2.39 -0.02 1.13 16 39 H 0.07 1.35 6.62 -2.39 -0.02 1.33 16 40 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 41 H 0.34 6.51 8.99 -89.69 -0.81 5.70 16 42 H 0.34 8.42 8.20 -89.70 -0.74 7.69 16 Total: -1.00 -64.06 291.78 0.25 -63.80 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: -0.52 Total: 20.03 kcal Atomic # 6 Polarization: -31.15 SS G_CDS: 3.21 Total: -27.95 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.46 Total: -103.29 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -64.06 0.25 -63.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716090.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.097 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds