Wall clock time and date at job start Mon Mar 30 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47174 * 2 1 4 4 C 1.50699 * 109.47034 * 239.99873 * 2 1 3 5 5 H 1.08003 * 120.00232 * 244.96452 * 4 2 1 6 6 C 1.37880 * 119.99871 * 64.96156 * 4 2 1 7 7 N 1.31511 * 119.99803 * 195.82703 * 6 4 2 8 8 Si 1.86795 * 119.99955 * 15.83406 * 6 4 2 9 9 H 1.48503 * 109.47188 * 94.03790 * 8 6 4 10 10 H 1.48499 * 109.46994 * 214.03922 * 8 6 4 11 11 H 1.48504 * 109.47270 * 334.03535 * 8 6 4 12 12 N 1.46902 * 109.46895 * 120.00365 * 2 1 3 13 13 C 1.46897 * 111.00277 * 51.51155 * 12 2 1 14 14 C 1.46908 * 110.99660 * 287.55798 * 12 2 1 15 15 H 1.08995 * 108.85160 * 39.49072 * 14 12 2 16 16 C 1.54066 * 108.79408 * 158.00397 * 14 12 2 17 17 C 1.54074 * 112.81422 * 162.44107 * 16 14 12 18 18 C 1.50470 * 112.49953 * 41.71462 * 17 16 14 19 19 C 1.54242 * 108.52620 * 265.85535 * 18 17 16 20 20 C 1.45542 * 112.40318 * 79.97957 * 19 18 17 21 21 C 1.50472 * 108.87750 * 280.92560 * 14 12 2 22 22 H 1.08997 * 109.63344 * 264.87929 * 21 14 12 23 23 N 1.46903 * 109.62693 * 25.46567 * 21 14 12 24 24 H 1.09000 * 109.46863 * 301.01310 * 1 2 3 25 25 H 1.08998 * 109.46597 * 61.01312 * 1 2 3 26 26 H 1.08996 * 109.47070 * 181.01320 * 1 2 3 27 27 H 0.97003 * 120.00070 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47260 * 288.77772 * 13 12 2 29 29 H 1.09000 * 109.46924 * 48.78195 * 13 12 2 30 30 H 1.08998 * 109.47175 * 168.77967 * 13 12 2 31 31 H 1.09001 * 108.81202 * 283.29817 * 16 14 12 32 32 H 1.09003 * 108.81901 * 41.57729 * 16 14 12 33 33 H 1.09006 * 108.87372 * 280.93622 * 17 16 14 34 34 H 1.09003 * 108.79922 * 162.44050 * 17 16 14 35 35 H 1.08997 * 109.62704 * 146.14411 * 18 17 16 36 36 H 1.09001 * 109.78839 * 25.66180 * 18 17 16 37 37 H 1.09004 * 108.89618 * 319.22354 * 19 18 17 38 38 H 1.09002 * 108.81683 * 200.67862 * 19 18 17 39 39 H 1.08999 * 108.89472 * 177.30528 * 20 19 18 40 40 H 1.09000 * 108.81752 * 58.76403 * 20 19 18 41 41 H 1.00901 * 110.99724 * 173.74190 * 23 21 14 42 42 H 1.00900 * 110.99950 * 297.68654 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5856 -1.6330 -1.1334 6 6 1.7857 -0.1827 -2.4802 7 7 1.9376 -0.9304 -3.5513 8 14 1.2359 1.5942 -2.6517 9 1 2.4203 2.4583 -2.8880 10 1 0.2992 1.7140 -3.7978 11 1 0.5509 2.0230 -1.4058 12 7 2.0197 -0.6926 1.1994 13 6 1.3905 -2.0126 1.3389 14 6 1.8050 0.1227 2.4025 15 1 0.8351 0.6141 2.3265 16 6 1.8001 -0.8023 3.6346 17 6 2.0141 -0.0389 4.9557 18 6 1.2440 1.2528 5.0055 19 6 2.1677 2.3928 4.5298 20 6 2.2691 2.4558 3.0792 21 6 2.8791 1.1740 2.4762 22 1 3.6929 0.8223 3.1103 23 7 3.3864 1.4565 1.1268 24 1 -0.3633 0.5295 0.8808 25 1 -0.3632 0.4980 -0.8989 26 1 -0.3633 -1.0275 0.0182 27 1 1.7637 -0.5593 -4.4305 28 1 0.3443 -1.8888 1.6187 29 1 1.4522 -2.5465 0.3906 30 1 1.9081 -2.5821 2.1108 31 1 0.8431 -1.3221 3.6800 32 1 2.5939 -1.5410 3.5229 33 1 3.0761 0.1790 5.0690 34 1 1.6943 -0.6723 5.7831 35 1 0.9199 1.4467 6.0280 36 1 0.3742 1.1894 4.3516 37 1 3.1629 2.2380 4.9468 38 1 1.7747 3.3405 4.8977 39 1 2.8934 3.3064 2.8057 40 1 1.2723 2.6020 2.6632 41 1 4.0346 2.2297 1.1388 42 1 3.8102 0.6358 0.7207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251716094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:38 Heat of formation + Delta-G solvation = 17.789850 kcal Electronic energy + Delta-G solvation = -19308.448764 eV Core-core repulsion = 16709.832026 eV Total energy + Delta-G solvation = -2598.616738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.60067 -36.40149 -33.65838 -32.77099 -31.29008 -29.57260 -27.88138 -25.74315 -24.99388 -23.23930 -22.94879 -20.32554 -19.49294 -18.14807 -16.53047 -15.69022 -15.46521 -15.30753 -14.27281 -14.19118 -13.77354 -13.41426 -13.13449 -13.12028 -12.90332 -12.42053 -12.13427 -11.87047 -11.71642 -11.49481 -11.15119 -10.99967 -10.77287 -10.58775 -10.43912 -10.29984 -10.16923 -10.06740 -9.96965 -9.63999 -9.35197 -9.06259 -8.33102 -7.57529 -7.06769 -5.93282 -3.82264 3.42669 3.51293 3.58295 4.59841 4.69937 4.73794 4.84700 5.09152 5.27025 5.33467 5.40453 5.41120 5.53958 5.60380 5.66689 5.83872 6.00262 6.07378 6.11527 6.19212 6.24008 6.26890 6.29090 6.35303 6.37555 6.47887 6.53067 6.59923 6.65737 6.69445 6.86149 6.97542 7.28354 7.50454 7.84311 7.98982 8.17532 8.29504 8.42257 8.87628 9.19191 9.75711 11.20200 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.008457 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.623175 B = 3309.993785 C = 3729.368114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.161 3.839 3 H 0.098 0.902 4 C -0.495 4.495 5 H 0.073 0.927 6 C 0.071 3.929 7 N -0.902 5.902 8 Si 0.868 3.132 9 H -0.282 1.282 10 H -0.297 1.297 11 H -0.255 1.255 12 N -0.519 5.519 13 C 0.029 3.971 14 C 0.086 3.914 15 H 0.040 0.960 16 C -0.117 4.117 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.113 4.113 20 C -0.117 4.117 21 C 0.112 3.888 22 H 0.030 0.970 23 N -0.830 5.830 24 H 0.016 0.984 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.259 0.741 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.045 0.955 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.319 0.681 42 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.276 4.785 16.188 16.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.115 0.885 4 C -0.533 4.533 5 H 0.091 0.909 6 C -0.130 4.130 7 N -0.541 5.541 8 Si 0.696 3.304 9 H -0.209 1.209 10 H -0.224 1.224 11 H -0.179 1.179 12 N -0.242 5.242 13 C -0.120 4.120 14 C -0.023 4.023 15 H 0.058 0.942 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.151 4.151 20 C -0.155 4.155 21 C 0.000 4.000 22 H 0.048 0.952 23 N -0.363 5.363 24 H 0.035 0.965 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.029 0.971 29 H 0.094 0.906 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.131 0.869 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 0.027 4.836 15.736 16.462 hybrid contribution -0.414 0.751 0.160 0.872 sum -0.386 5.586 15.896 16.854 Atomic orbital electron populations 1.22821 1.02584 0.99696 0.98564 1.20355 0.88152 0.98743 0.87407 0.88514 1.20930 1.34692 1.09334 0.88339 0.90913 1.24837 0.95155 0.97186 0.95814 1.69993 1.50550 1.35362 0.98232 0.87121 0.78527 0.87145 0.77612 1.20878 1.22375 1.17933 1.62254 1.57717 1.02279 1.01930 1.22338 0.95205 0.92637 1.01810 1.21476 0.96960 0.93503 0.90366 0.94205 1.22164 1.01767 0.98316 0.93306 1.21330 1.00347 0.96416 0.97272 1.21358 0.98852 0.94865 1.00581 1.20459 0.99606 0.98415 0.96590 1.20546 1.01869 0.97942 0.95140 1.20908 0.95844 0.93513 0.89781 0.95240 1.58986 1.44810 1.12586 1.19964 0.96477 0.93503 0.93901 0.93102 0.97096 0.90581 0.93640 0.92555 0.91386 0.92253 0.92735 0.92432 0.91608 0.92494 0.92642 0.92345 0.91884 0.86884 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.07 7.81 37.16 0.29 -3.78 16 2 C 0.16 3.75 0.88 -68.86 -0.06 3.69 16 3 H 0.10 2.31 3.99 -51.93 -0.21 2.10 16 4 C -0.49 -13.68 8.36 -34.44 -0.29 -13.96 16 5 H 0.07 2.21 7.42 -52.48 -0.39 1.82 16 6 C 0.07 2.04 5.35 -17.82 -0.10 1.94 16 7 N -0.90 -27.78 13.96 55.43 0.77 -27.00 16 8 Si 0.87 21.97 25.83 -169.99 -4.39 17.58 16 9 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 11 H -0.26 -6.21 5.47 56.52 0.31 -5.90 16 12 N -0.52 -10.42 3.61 -229.14 -0.83 -11.25 16 13 C 0.03 0.55 7.25 60.06 0.44 0.99 16 14 C 0.09 1.45 1.54 -68.41 -0.11 1.35 16 15 H 0.04 0.74 4.72 -51.93 -0.25 0.49 16 16 C -0.12 -1.66 3.96 -25.61 -0.10 -1.76 16 17 C -0.12 -1.34 5.31 -27.43 -0.15 -1.48 16 18 C -0.12 -1.33 5.60 -27.34 -0.15 -1.49 16 19 C -0.11 -1.26 5.26 -29.60 -0.16 -1.42 16 20 C -0.12 -1.58 4.89 -29.60 -0.14 -1.72 16 21 C 0.11 1.72 2.86 -68.33 -0.20 1.53 16 22 H 0.03 0.44 6.98 -51.93 -0.36 0.08 16 23 N -0.83 -14.35 6.15 -5.19 -0.03 -14.38 16 24 H 0.02 0.35 6.57 -51.93 -0.34 0.01 16 25 H 0.05 1.12 5.00 -51.93 -0.26 0.86 16 26 H 0.04 0.97 6.50 -51.93 -0.34 0.63 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.01 0.20 6.55 -51.93 -0.34 -0.14 16 29 H 0.08 1.66 6.72 -51.93 -0.35 1.32 16 30 H 0.04 0.77 6.41 -51.93 -0.33 0.43 16 31 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 32 H 0.07 0.99 6.99 -51.93 -0.36 0.63 16 33 H 0.06 0.68 6.63 -51.93 -0.34 0.33 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.82 7.00 -51.93 -0.36 0.46 16 37 H 0.06 0.60 7.47 -51.93 -0.39 0.22 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.75 7.93 -51.93 -0.41 0.33 16 40 H 0.06 0.95 7.47 -51.93 -0.39 0.56 16 41 H 0.32 4.73 8.83 -39.29 -0.35 4.38 16 42 H 0.37 7.09 7.52 -39.29 -0.30 6.79 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -29.48 289.14 -7.78 -37.27 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -6.94 Total: 9.54 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -0.72 Total: -16.12 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: -0.09 Total: -52.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -4.39 Total: 17.58 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.48 -7.78 -37.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.056 kcal (2) G-P(sol) polarization free energy of solvation -29.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds