Wall clock time and date at job start Mon Mar 30 2020 03:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08993 * 109.47174 * 2 1 4 4 C 1.50699 * 109.47034 * 239.99873 * 2 1 3 5 5 H 1.08003 * 120.00232 * 244.96452 * 4 2 1 6 6 C 1.37880 * 119.99871 * 64.96156 * 4 2 1 7 7 N 1.31511 * 119.99803 * 195.82703 * 6 4 2 8 8 Si 1.86795 * 119.99955 * 15.83406 * 6 4 2 9 9 H 1.48503 * 109.47188 * 94.03790 * 8 6 4 10 10 H 1.48499 * 109.46994 * 214.03922 * 8 6 4 11 11 H 1.48504 * 109.47270 * 334.03535 * 8 6 4 12 12 N 1.46902 * 109.46895 * 120.00365 * 2 1 3 13 13 C 1.46897 * 111.00277 * 51.51155 * 12 2 1 14 14 C 1.46908 * 110.99660 * 287.55798 * 12 2 1 15 15 H 1.08995 * 108.85160 * 39.49072 * 14 12 2 16 16 C 1.54066 * 108.79408 * 158.00397 * 14 12 2 17 17 C 1.54074 * 112.81422 * 162.44107 * 16 14 12 18 18 C 1.50470 * 112.49953 * 41.71462 * 17 16 14 19 19 C 1.54242 * 108.52620 * 265.85535 * 18 17 16 20 20 C 1.45542 * 112.40318 * 79.97957 * 19 18 17 21 21 C 1.50472 * 108.87750 * 280.92560 * 14 12 2 22 22 H 1.08997 * 109.63344 * 264.87929 * 21 14 12 23 23 N 1.46903 * 109.62693 * 25.46567 * 21 14 12 24 24 H 1.09000 * 109.46863 * 301.01310 * 1 2 3 25 25 H 1.08998 * 109.46597 * 61.01312 * 1 2 3 26 26 H 1.08996 * 109.47070 * 181.01320 * 1 2 3 27 27 H 0.97003 * 120.00070 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.47260 * 288.77772 * 13 12 2 29 29 H 1.09000 * 109.46924 * 48.78195 * 13 12 2 30 30 H 1.08998 * 109.47175 * 168.77967 * 13 12 2 31 31 H 1.09001 * 108.81202 * 283.29817 * 16 14 12 32 32 H 1.09003 * 108.81901 * 41.57729 * 16 14 12 33 33 H 1.09006 * 108.87372 * 280.93622 * 17 16 14 34 34 H 1.09003 * 108.79922 * 162.44050 * 17 16 14 35 35 H 1.08997 * 109.62704 * 146.14411 * 18 17 16 36 36 H 1.09001 * 109.78839 * 25.66180 * 18 17 16 37 37 H 1.09004 * 108.89618 * 319.22354 * 19 18 17 38 38 H 1.09002 * 108.81683 * 200.67862 * 19 18 17 39 39 H 1.08999 * 108.89472 * 177.30528 * 20 19 18 40 40 H 1.09000 * 108.81752 * 58.76403 * 20 19 18 41 41 H 1.00901 * 110.99724 * 173.74190 * 23 21 14 42 42 H 1.00900 * 110.99950 * 297.68654 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5856 -1.6330 -1.1334 6 6 1.7857 -0.1827 -2.4802 7 7 1.9376 -0.9304 -3.5513 8 14 1.2359 1.5942 -2.6517 9 1 2.4203 2.4583 -2.8880 10 1 0.2992 1.7140 -3.7978 11 1 0.5509 2.0230 -1.4058 12 7 2.0197 -0.6926 1.1994 13 6 1.3905 -2.0126 1.3389 14 6 1.8050 0.1227 2.4025 15 1 0.8351 0.6141 2.3265 16 6 1.8001 -0.8023 3.6346 17 6 2.0141 -0.0389 4.9557 18 6 1.2440 1.2528 5.0055 19 6 2.1677 2.3928 4.5298 20 6 2.2691 2.4558 3.0792 21 6 2.8791 1.1740 2.4762 22 1 3.6929 0.8223 3.1103 23 7 3.3864 1.4565 1.1268 24 1 -0.3633 0.5295 0.8808 25 1 -0.3632 0.4980 -0.8989 26 1 -0.3633 -1.0275 0.0182 27 1 1.7637 -0.5593 -4.4305 28 1 0.3443 -1.8888 1.6187 29 1 1.4522 -2.5465 0.3906 30 1 1.9081 -2.5821 2.1108 31 1 0.8431 -1.3221 3.6800 32 1 2.5939 -1.5410 3.5229 33 1 3.0761 0.1790 5.0690 34 1 1.6943 -0.6723 5.7831 35 1 0.9199 1.4467 6.0280 36 1 0.3742 1.1894 4.3516 37 1 3.1629 2.2380 4.9468 38 1 1.7747 3.3405 4.8977 39 1 2.8934 3.3064 2.8057 40 1 1.2723 2.6020 2.6632 41 1 4.0346 2.2297 1.1388 42 1 3.8102 0.6358 0.7207 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251716094.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:38 Heat of formation + Delta-G solvation = -2.806108 kcal Electronic energy + Delta-G solvation = -19309.341872 eV Core-core repulsion = 16709.832026 eV Total energy + Delta-G solvation = -2599.509846 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.88825 -37.81815 -34.83721 -34.69188 -32.81802 -31.08165 -29.27589 -27.19130 -27.05567 -24.33941 -24.32291 -21.33688 -21.25080 -19.45938 -18.54079 -17.12938 -16.91734 -16.65843 -15.94940 -15.34732 -15.00543 -14.90488 -14.70824 -14.40841 -14.20022 -14.08728 -13.90007 -13.32049 -13.08895 -13.02912 -12.65900 -12.58070 -12.42581 -12.02791 -11.94272 -11.56707 -11.40325 -11.30883 -11.25894 -11.22495 -11.07409 -10.94304 -10.41602 -9.10544 -8.64832 -8.17742 -6.08991 1.39819 1.44628 1.55511 2.46315 3.19280 3.34452 3.62095 3.80853 4.12023 4.21930 4.24901 4.34403 4.38864 4.47295 4.56715 4.59964 4.68390 4.74756 4.78292 4.86138 4.93470 5.00763 5.05103 5.15271 5.17411 5.26930 5.30026 5.34974 5.37488 5.39859 5.43719 5.57761 5.59914 5.69238 5.94091 6.23329 6.50522 6.73906 6.84951 6.96173 7.00061 7.52351 8.99530 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.008457 C = 0.007506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.623175 B = 3309.993785 C = 3729.368114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.169 3.831 3 H 0.101 0.899 4 C -0.485 4.485 5 H 0.031 0.969 6 C 0.015 3.985 7 N -0.952 5.952 8 Si 0.931 3.069 9 H -0.277 1.277 10 H -0.300 1.300 11 H -0.238 1.238 12 N -0.527 5.527 13 C 0.035 3.965 14 C 0.088 3.912 15 H 0.027 0.973 16 C -0.113 4.113 17 C -0.110 4.110 18 C -0.119 4.119 19 C -0.112 4.112 20 C -0.109 4.109 21 C 0.111 3.889 22 H 0.040 0.960 23 N -0.846 5.846 24 H 0.038 0.962 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.259 0.741 28 H 0.016 0.984 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.333 0.667 42 H 0.356 0.644 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.050 6.548 18.958 20.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.061 3.939 3 H 0.118 0.882 4 C -0.524 4.524 5 H 0.049 0.951 6 C -0.181 4.181 7 N -0.593 5.593 8 Si 0.757 3.243 9 H -0.203 1.203 10 H -0.227 1.227 11 H -0.161 1.161 12 N -0.250 5.250 13 C -0.113 4.113 14 C -0.021 4.021 15 H 0.045 0.955 16 C -0.152 4.152 17 C -0.148 4.148 18 C -0.156 4.156 19 C -0.150 4.150 20 C -0.148 4.148 21 C -0.001 4.001 22 H 0.058 0.942 23 N -0.379 5.379 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.064 0.936 41 H 0.146 0.854 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -0.198 6.616 18.549 19.695 hybrid contribution -0.306 0.108 -0.656 0.732 sum -0.504 6.725 17.893 19.121 Atomic orbital electron populations 1.22736 1.02109 0.99514 0.98985 1.20145 0.88240 0.98465 0.87061 0.88221 1.21171 1.33116 1.07796 0.90311 0.95053 1.25600 0.95881 1.01149 0.95515 1.70133 1.53016 1.37351 0.98833 0.86103 0.78207 0.82004 0.77955 1.20327 1.22738 1.16081 1.62143 1.57755 1.02704 1.02419 1.22257 0.95968 0.92408 1.00687 1.21603 0.96824 0.93757 0.89889 0.95537 1.22121 1.01566 0.97954 0.93518 1.21302 1.00891 0.96671 0.95937 1.21366 0.98163 0.94557 1.01516 1.20447 1.00391 0.99282 0.94830 1.20503 1.00703 0.96957 0.96588 1.20990 0.95667 0.94216 0.89185 0.94239 1.58915 1.45283 1.12466 1.21228 0.94264 0.94651 0.94553 0.93175 0.96519 0.94145 0.91047 0.92654 0.91840 0.91669 0.90995 0.90323 0.93099 0.91371 0.91124 0.91542 0.93624 0.85357 0.82830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.84 7.81 71.98 0.56 -7.28 16 2 C 0.17 7.84 0.88 44.17 0.04 7.88 16 3 H 0.10 4.65 3.99 -2.39 -0.01 4.64 16 4 C -0.49 -27.56 8.36 25.60 0.21 -27.35 16 5 H 0.03 2.00 7.42 -2.91 -0.02 1.98 16 6 C 0.01 0.86 5.35 84.66 0.45 1.31 16 7 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 8 Si 0.93 45.73 25.83 68.60 1.77 47.50 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 11 H -0.24 -10.88 5.47 99.48 0.54 -10.33 16 12 N -0.53 -20.94 3.61 -878.87 -3.17 -24.11 16 13 C 0.04 1.36 7.25 127.69 0.93 2.28 16 14 C 0.09 2.81 1.54 44.46 0.07 2.88 16 15 H 0.03 0.93 4.72 -2.39 -0.01 0.92 16 16 C -0.11 -2.92 3.96 31.32 0.12 -2.80 16 17 C -0.11 -2.14 5.31 30.14 0.16 -1.98 16 18 C -0.12 -2.21 5.60 30.20 0.17 -2.04 16 19 C -0.11 -2.08 5.26 28.74 0.15 -1.93 16 20 C -0.11 -2.63 4.89 28.74 0.14 -2.49 16 21 C 0.11 3.19 2.86 44.52 0.13 3.32 16 22 H 0.04 1.07 6.98 -2.39 -0.02 1.06 16 23 N -0.85 -28.06 6.15 -170.34 -1.05 -29.11 16 24 H 0.04 1.57 6.57 -2.39 -0.02 1.55 16 25 H 0.03 1.64 5.00 -2.39 -0.01 1.63 16 26 H 0.04 1.64 6.50 -2.39 -0.02 1.62 16 27 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 28 H 0.02 0.61 6.55 -2.39 -0.02 0.59 16 29 H 0.04 1.82 6.72 -2.39 -0.02 1.81 16 30 H 0.07 2.35 6.41 -2.39 -0.02 2.33 16 31 H 0.05 1.43 7.38 -2.39 -0.02 1.41 16 32 H 0.06 1.70 6.99 -2.39 -0.02 1.68 16 33 H 0.06 1.22 6.63 -2.38 -0.02 1.21 16 34 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.12 7.00 -2.39 -0.02 1.10 16 37 H 0.07 1.15 7.47 -2.39 -0.02 1.13 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.49 7.93 -2.39 -0.02 1.47 16 40 H 0.04 1.26 7.47 -2.39 -0.02 1.24 16 41 H 0.33 9.28 8.83 -89.69 -0.79 8.49 16 42 H 0.36 13.51 7.52 -89.69 -0.67 12.83 16 Total: -1.00 -64.57 289.14 0.38 -64.19 By element: Atomic # 1 Polarization: 30.51 SS G_CDS: -0.61 Total: 29.90 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 3.13 Total: -28.21 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -3.92 Total: -113.39 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.77 Total: 47.50 kcal Total: -64.57 0.38 -64.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251716094.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.384 kcal (2) G-P(sol) polarization free energy of solvation -64.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds