Wall clock time and date at job start Mon Mar 30 2020 03:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47217 * 2 1 4 4 C 1.46854 * 110.99958 * 65.78691 * 3 2 1 5 5 C 1.53039 * 109.52227 * 185.83752 * 4 3 2 6 6 C 1.53126 * 109.28009 * 300.82107 * 5 4 3 7 7 C 1.53099 * 109.15071 * 57.65227 * 6 5 4 8 8 H 1.09009 * 109.50682 * 62.29317 * 7 6 5 9 9 C 1.53008 * 109.48809 * 182.39661 * 7 6 5 10 10 H 1.08995 * 109.46994 * 179.81056 * 9 7 6 11 11 C 1.53002 * 109.46577 * 59.81124 * 9 7 6 12 12 N 1.46897 * 109.46959 * 299.81623 * 9 7 6 13 13 C 1.46902 * 110.99579 * 204.99911 * 12 9 7 14 14 C 1.50705 * 109.47088 * 180.02562 * 13 12 9 15 15 H 1.08002 * 119.99753 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99705 * 180.02562 * 14 13 12 17 17 N 1.31506 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99640 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46859 * 89.99824 * 18 16 14 20 20 H 1.48498 * 109.47347 * 209.99826 * 18 16 14 21 21 H 1.48500 * 109.47434 * 330.00346 * 18 16 14 22 22 C 1.46847 * 110.99897 * 189.99553 * 3 2 1 23 23 H 1.09006 * 109.46660 * 60.00028 * 1 2 3 24 24 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47339 * 300.00361 * 1 2 3 26 26 H 1.08994 * 109.47287 * 239.99795 * 2 1 3 27 27 H 1.09006 * 109.46660 * 119.99972 * 2 1 3 28 28 H 1.08993 * 109.46229 * 305.85774 * 4 3 2 29 29 H 1.09008 * 109.45803 * 65.83386 * 4 3 2 30 30 H 1.08994 * 109.50227 * 60.75933 * 5 4 3 31 31 H 1.09000 * 109.50337 * 180.88158 * 5 4 3 32 32 H 1.08990 * 109.52264 * 177.55890 * 6 5 4 33 33 H 1.09001 * 109.52183 * 297.75176 * 6 5 4 34 34 H 1.08998 * 109.46613 * 179.97438 * 11 9 7 35 35 H 1.08995 * 109.47403 * 299.99682 * 11 9 7 36 36 H 1.09000 * 109.46843 * 60.00149 * 11 9 7 37 37 H 1.00896 * 111.00507 * 81.04526 * 12 9 7 38 38 H 1.09004 * 109.46836 * 299.99616 * 13 12 9 39 39 H 1.08993 * 109.47652 * 59.99925 * 13 12 9 40 40 H 0.97003 * 120.00221 * 179.97438 * 17 16 14 41 41 H 1.09002 * 109.46481 * 294.17890 * 22 3 2 42 42 H 1.08994 * 109.46283 * 54.15743 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6650 2.0686 1.2504 5 6 2.0607 3.5439 1.1567 6 6 3.5677 3.6482 0.9058 7 6 3.9173 2.8874 -0.3759 8 1 3.4073 3.3470 -1.2226 9 6 5.4298 2.9362 -0.6020 10 1 5.6788 2.3916 -1.5127 11 6 6.1443 2.2930 0.5884 12 7 5.8603 4.3344 -0.7342 13 6 7.1043 4.4311 -1.5095 14 6 7.5143 5.8768 -1.6233 15 1 6.9107 6.6468 -1.1659 16 6 8.6592 6.2165 -2.3124 17 7 9.3938 5.2789 -2.8699 18 14 9.1669 8.0086 -2.4541 19 1 10.0463 8.3656 -1.3119 20 1 9.9014 8.2158 -3.7280 21 1 7.9568 8.8690 -2.4348 22 6 3.4680 1.4310 -0.2380 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 0.5904 1.9905 1.4148 29 1 2.1944 1.6028 2.0817 30 1 1.5216 4.0137 0.3342 31 1 1.8116 4.0476 2.0907 32 1 3.8468 4.6960 0.7952 33 1 4.1079 3.2131 1.7466 34 1 7.2217 2.3273 0.4271 35 1 5.8953 2.8376 1.4991 36 1 5.8248 1.2555 0.6865 37 1 5.9637 4.7681 0.1709 38 1 7.8910 3.8693 -1.0057 39 1 6.9446 4.0188 -2.5058 40 1 10.1991 5.5179 -3.3550 41 1 3.9887 0.9681 0.6003 42 1 3.7028 0.8902 -1.1546 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252436415.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:50 Heat of formation + Delta-G solvation = -35.731710 kcal Electronic energy + Delta-G solvation = -17918.989100 eV Core-core repulsion = 15318.051493 eV Total energy + Delta-G solvation = -2600.937607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.54419 -37.91998 -35.40806 -34.26353 -32.47472 -30.94752 -29.40322 -27.97022 -25.68038 -24.80161 -23.34200 -23.05809 -21.37314 -19.85548 -18.51664 -17.04349 -16.75550 -16.31771 -15.97632 -15.62566 -15.37064 -15.20360 -14.78557 -14.47299 -14.23615 -14.07015 -13.44333 -13.35560 -13.20098 -12.88853 -12.78132 -12.72652 -12.63645 -12.36657 -12.19836 -12.00038 -11.85673 -11.80520 -11.42518 -11.32378 -11.03871 -10.87385 -10.65860 -9.19209 -9.01334 -8.21710 -6.32799 1.40903 1.42881 1.54741 2.40409 2.93406 3.11442 3.62154 3.84613 3.92123 4.05577 4.18683 4.29306 4.31466 4.42605 4.44893 4.52786 4.59185 4.62420 4.67106 4.74293 4.82079 4.90922 4.96947 4.99776 5.09074 5.10319 5.14981 5.17063 5.23445 5.32140 5.37235 5.41273 5.52047 5.60645 5.66450 6.04774 6.19474 6.25784 6.50432 6.77377 6.93517 7.38285 8.89830 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046941 B = 0.004396 C = 0.004250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.348076 B = 6368.260397 C = 6586.788057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.551 5.551 4 C 0.056 3.944 5 C -0.112 4.112 6 C -0.112 4.112 7 C -0.058 4.058 8 H 0.058 0.942 9 C 0.086 3.914 10 H 0.049 0.951 11 C -0.172 4.172 12 N -0.680 5.680 13 C 0.211 3.789 14 C -0.535 4.535 15 H 0.064 0.936 16 C 0.000 4.000 17 N -0.935 5.935 18 Si 0.973 3.027 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.265 1.265 22 C 0.067 3.933 23 H 0.054 0.946 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.087 0.913 29 H 0.032 0.968 30 H 0.059 0.941 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.334 0.666 38 H -0.038 1.038 39 H -0.006 1.006 40 H 0.265 0.735 41 H 0.040 0.960 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.970 -9.319 9.806 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.079 4.079 3 N -0.276 5.276 4 C -0.071 4.071 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.077 4.077 8 H 0.077 0.923 9 C -0.025 4.025 10 H 0.067 0.933 11 C -0.231 4.231 12 N -0.310 5.310 13 C 0.083 3.917 14 C -0.573 4.573 15 H 0.082 0.918 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.797 3.203 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.189 1.189 22 C -0.061 4.061 23 H 0.073 0.927 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.105 0.895 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.152 0.848 38 H -0.020 1.020 39 H 0.012 0.988 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.461 -8.982 8.768 20.701 hybrid contribution 1.880 -0.061 0.709 2.010 sum -14.581 -9.043 9.477 19.601 Atomic orbital electron populations 1.21771 0.93814 1.02259 1.02237 1.22123 0.96950 0.88090 1.00785 1.61907 1.13505 1.16374 1.35834 1.22160 1.01221 0.94282 0.89478 1.21562 0.95389 0.95900 1.02119 1.21592 0.96481 1.00343 0.96554 1.20956 0.92986 0.95142 0.98664 0.92334 1.21520 0.95044 0.89052 0.96844 0.93307 1.22483 0.99453 1.01967 0.99153 1.60590 1.34051 1.14951 1.21372 1.19182 0.85363 0.95543 0.91603 1.21572 1.08146 0.93522 1.34075 0.91796 1.25960 0.96289 1.02610 0.94913 1.70093 1.16207 1.34902 1.36329 0.85330 0.78417 0.78898 0.77628 1.19623 1.20756 1.18882 1.22066 0.87497 0.96116 1.00461 0.92663 0.90974 0.92304 0.90999 0.94717 0.89450 0.94945 0.92205 0.90128 0.92290 0.91867 0.95000 0.91373 0.90730 0.84827 1.02034 0.98799 0.92666 0.94152 0.91495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.84 71.98 0.71 -1.42 16 2 C 0.05 0.87 5.68 86.30 0.49 1.36 16 3 N -0.55 -12.42 4.66 -896.35 -4.17 -16.59 16 4 C 0.06 1.11 5.29 86.32 0.46 1.57 16 5 C -0.11 -2.43 6.09 30.65 0.19 -2.24 16 6 C -0.11 -2.94 4.66 30.67 0.14 -2.79 16 7 C -0.06 -1.73 2.37 -10.75 -0.03 -1.76 16 8 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 9 C 0.09 3.10 2.43 44.92 0.11 3.20 16 10 H 0.05 1.94 7.80 -2.39 -0.02 1.92 16 11 C -0.17 -5.36 8.46 71.98 0.61 -4.75 16 12 N -0.68 -29.76 5.77 -495.56 -2.86 -32.62 16 13 C 0.21 11.59 5.24 85.56 0.45 12.04 16 14 C -0.53 -31.15 9.32 25.60 0.24 -30.91 16 15 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 16 C 0.00 0.02 5.46 84.66 0.46 0.48 16 17 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 18 Si 0.97 44.96 29.54 68.60 2.03 46.98 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 21 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 22 C 0.07 1.68 4.42 86.32 0.38 2.06 16 23 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 24 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.06 0.82 6.43 -2.39 -0.02 0.80 16 26 H 0.07 1.31 7.99 -2.39 -0.02 1.29 16 27 H 0.03 0.60 8.12 -2.38 -0.02 0.58 16 28 H 0.09 1.48 6.21 -2.39 -0.01 1.46 16 29 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.73 7.35 -2.39 -0.02 1.71 16 33 H 0.06 1.55 6.31 -2.39 -0.02 1.54 16 34 H 0.03 1.13 7.45 -2.39 -0.02 1.12 16 35 H 0.07 1.93 6.36 -2.39 -0.02 1.92 16 36 H 0.07 1.95 6.41 -2.39 -0.02 1.94 16 37 H 0.33 13.90 7.78 -89.70 -0.70 13.20 16 38 H -0.04 -2.23 7.44 -2.39 -0.02 -2.25 16 39 H -0.01 -0.37 8.05 -2.39 -0.02 -0.39 16 40 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.04 0.96 6.38 -2.39 -0.02 0.95 16 42 H 0.07 1.73 8.02 -2.39 -0.02 1.71 16 Total: -1.00 -64.03 316.92 -0.24 -64.28 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.27 Total: 18.33 kcal Atomic # 6 Polarization: -27.37 SS G_CDS: 4.21 Total: -23.16 kcal Atomic # 7 Polarization: -99.68 SS G_CDS: -6.75 Total: -106.43 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -64.03 -0.24 -64.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252436415.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.544 kcal (2) G-P(sol) polarization free energy of solvation -64.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds