Wall clock time and date at job start Mon Mar 30 2020 03:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.47071 * 2 1 4 4 C 1.46848 * 111.00385 * 294.20662 * 3 2 1 5 5 C 1.53032 * 109.52876 * 174.15975 * 4 3 2 6 6 C 1.53122 * 109.27329 * 59.18578 * 5 4 3 7 7 C 1.53119 * 109.15984 * 302.34351 * 6 5 4 8 8 H 1.09003 * 109.53762 * 297.69946 * 7 6 5 9 9 C 1.53003 * 109.50271 * 177.59796 * 7 6 5 10 10 H 1.09002 * 109.46964 * 300.19782 * 9 7 6 11 11 C 1.53001 * 109.47005 * 180.19969 * 9 7 6 12 12 N 1.46897 * 109.47100 * 60.19792 * 9 7 6 13 13 C 1.46901 * 111.00139 * 204.99699 * 12 9 7 14 14 C 1.50696 * 109.47265 * 179.97438 * 13 12 9 15 15 H 1.07997 * 120.00012 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99842 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99806 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00621 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00111 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00717 * 18 16 14 22 22 C 1.46849 * 110.99794 * 170.00362 * 3 2 1 23 23 H 1.08996 * 109.46842 * 59.99881 * 1 2 3 24 24 H 1.08994 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46838 * 299.99971 * 1 2 3 26 26 H 1.09002 * 109.46838 * 240.00029 * 2 1 3 27 27 H 1.08996 * 109.46842 * 120.00119 * 2 1 3 28 28 H 1.08999 * 109.46833 * 294.18578 * 4 3 2 29 29 H 1.09006 * 109.45631 * 54.15622 * 4 3 2 30 30 H 1.09005 * 109.50796 * 179.12505 * 5 4 3 31 31 H 1.09003 * 109.50632 * 299.24513 * 5 4 3 32 32 H 1.09000 * 109.52205 * 182.44437 * 6 5 4 33 33 H 1.08999 * 109.52659 * 62.24891 * 6 5 4 34 34 H 1.09002 * 109.47107 * 299.99726 * 11 9 7 35 35 H 1.08995 * 109.47522 * 59.99813 * 11 9 7 36 36 H 1.08998 * 109.47143 * 180.02562 * 11 9 7 37 37 H 1.00899 * 110.99868 * 81.04746 * 12 9 7 38 38 H 1.09008 * 109.46741 * 60.00031 * 13 12 9 39 39 H 1.08991 * 109.47293 * 300.00330 * 13 12 9 40 40 H 0.97000 * 119.99838 * 359.97438 * 17 16 14 41 41 H 1.08997 * 109.46683 * 65.82150 * 22 3 2 42 42 H 1.09002 * 109.46095 * 305.84845 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6652 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5677 3.6482 -0.9058 7 6 3.9176 2.8874 0.3761 8 1 3.4080 3.3467 1.2232 9 6 5.4300 2.9359 0.6022 10 1 5.9390 2.4777 -0.2458 11 6 5.7793 2.1713 1.8806 12 7 5.8607 4.3340 0.7347 13 6 7.2742 4.4868 0.3648 14 6 7.6787 5.9310 0.5123 15 1 6.9581 6.6621 0.8477 16 6 8.9692 6.3186 0.2200 17 7 9.8469 5.4282 -0.1880 18 14 9.4709 8.1086 0.4035 19 1 9.9770 8.3421 1.7800 20 1 10.5397 8.4262 -0.5773 21 1 8.2950 8.9804 0.1539 22 6 3.4681 1.4310 0.2380 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1943 1.6027 -2.0817 29 1 0.5904 1.9906 -1.4147 30 1 1.8117 4.0476 -2.0908 31 1 1.5215 4.0138 -0.3342 32 1 3.8469 4.6960 -0.7952 33 1 4.1080 3.2130 -1.7466 34 1 5.2703 2.6295 2.7286 35 1 5.4598 1.1339 1.7824 36 1 6.8567 2.2062 2.0420 37 1 5.6922 4.6774 1.6684 38 1 7.4147 4.1743 -0.6701 39 1 7.8896 3.8682 1.0178 40 1 9.5864 4.4986 -0.2829 41 1 3.9888 0.9682 -0.6002 42 1 3.7028 0.8900 1.1547 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252436416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:52 Heat of formation + Delta-G solvation = -22.276568 kcal Electronic energy + Delta-G solvation = -17931.414428 eV Core-core repulsion = 15331.060280 eV Total energy + Delta-G solvation = -2600.354148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.35734 -36.58505 -34.00240 -32.88292 -31.04976 -29.83646 -28.33644 -25.61078 -24.33139 -23.42469 -21.96207 -21.55629 -19.99911 -19.50488 -16.85988 -16.09969 -15.32788 -14.92037 -14.44648 -14.00835 -13.82296 -13.68667 -13.57298 -13.35822 -13.22496 -12.54363 -12.50163 -12.03954 -11.93475 -11.63782 -11.59381 -11.24092 -11.13910 -10.98584 -10.74016 -10.64369 -10.54257 -10.19920 -10.09095 -9.98402 -9.85648 -8.60014 -8.39385 -8.32928 -7.32055 -6.35858 -4.04394 3.45092 3.49573 3.65494 3.83811 4.54445 4.77619 4.88188 5.00525 5.08247 5.14977 5.24828 5.31743 5.40728 5.43008 5.47938 5.57813 5.64374 5.68036 5.69998 5.75407 5.78451 5.87746 5.92248 6.06109 6.07805 6.16850 6.25840 6.28554 6.42505 6.51279 6.76300 6.80846 6.99463 7.10717 7.12986 7.21533 7.83727 8.19492 8.51520 8.61324 8.89578 9.67424 11.03987 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046934 B = 0.004516 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.434002 B = 6198.990589 C = 6538.560468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.054 3.946 5 C -0.118 4.118 6 C -0.106 4.106 7 C -0.067 4.067 8 H 0.073 0.927 9 C 0.086 3.914 10 H 0.066 0.934 11 C -0.180 4.180 12 N -0.674 5.674 13 C 0.185 3.815 14 C -0.593 4.593 15 H 0.056 0.944 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 1.075 2.925 19 H -0.289 1.289 20 H -0.285 1.285 21 H -0.288 1.288 22 C 0.060 3.940 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.072 0.928 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.331 0.669 38 H 0.016 0.984 39 H -0.025 1.025 40 H 0.267 0.733 41 H 0.029 0.971 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.509 -9.729 0.212 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.074 4.074 5 C -0.155 4.155 6 C -0.143 4.143 7 C -0.086 4.086 8 H 0.092 0.908 9 C -0.026 4.026 10 H 0.084 0.916 11 C -0.239 4.239 12 N -0.303 5.303 13 C 0.058 3.942 14 C -0.632 4.632 15 H 0.074 0.926 16 C -0.190 4.190 17 N -0.552 5.552 18 Si 0.904 3.096 19 H -0.216 1.216 20 H -0.211 1.211 21 H -0.214 1.214 22 C -0.068 4.068 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.148 0.852 38 H 0.034 0.966 39 H -0.007 1.007 40 H 0.077 0.923 41 H 0.047 0.953 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.690 -8.245 -0.217 17.725 hybrid contribution -0.367 -2.073 0.274 2.123 sum -16.056 -10.318 0.057 19.086 Atomic orbital electron populations 1.21802 0.95057 1.01238 1.02477 1.22047 0.95963 0.89313 1.00493 1.61947 1.14362 1.14851 1.35135 1.22150 1.00164 0.95263 0.89820 1.21627 0.97567 0.94795 1.01542 1.21479 0.93816 1.02461 0.96586 1.21096 0.95131 0.93501 0.98877 0.90814 1.21521 0.94183 0.90497 0.96364 0.91608 1.22552 1.01711 1.00363 0.99309 1.60593 1.23156 1.15281 1.31272 1.19656 0.82783 0.97151 0.94608 1.22042 0.98471 0.93539 1.49161 0.92580 1.25857 0.92913 1.06338 0.93900 1.70765 1.36863 1.03737 1.43842 0.83454 0.75567 0.74005 0.76604 1.21564 1.21062 1.21373 1.22215 0.86506 0.97897 1.00190 0.92705 0.92568 0.91857 0.95294 0.91000 0.95341 0.91043 0.91953 0.91396 0.89826 0.93138 0.92761 0.92959 0.92738 0.85212 0.96644 1.00692 0.92310 0.95270 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.84 37.16 0.37 -0.90 16 2 C 0.05 0.51 5.68 -3.82 -0.02 0.48 16 3 N -0.54 -6.57 4.66 -234.67 -1.09 -7.67 16 4 C 0.05 0.63 5.29 -3.84 -0.02 0.61 16 5 C -0.12 -1.49 6.09 -26.65 -0.16 -1.65 16 6 C -0.11 -1.62 5.09 -26.61 -0.14 -1.76 16 7 C -0.07 -1.00 2.12 -90.54 -0.19 -1.19 16 8 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 9 C 0.09 1.50 2.17 -67.71 -0.15 1.36 16 10 H 0.07 1.24 7.80 -51.93 -0.40 0.84 16 11 C -0.18 -2.84 8.81 37.16 0.33 -2.51 16 12 N -0.67 -14.34 5.53 -107.99 -0.60 -14.94 16 13 C 0.19 4.84 4.55 -4.98 -0.02 4.81 16 14 C -0.59 -17.11 9.32 -34.44 -0.32 -17.43 16 15 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 16 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 17 N -0.92 -28.32 13.65 55.43 0.76 -27.56 16 18 Si 1.08 25.67 29.90 -169.99 -5.08 20.59 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.06 0.79 4.36 -3.83 -0.02 0.78 16 23 H 0.05 0.46 6.43 -51.93 -0.33 0.13 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.03 0.29 8.12 -51.93 -0.42 -0.13 16 27 H 0.07 0.70 7.99 -51.93 -0.41 0.28 16 28 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.07 0.74 6.21 -51.93 -0.32 0.42 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.47 7.70 -51.93 -0.40 1.07 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.81 8.13 -51.93 -0.42 0.39 16 35 H 0.05 0.71 6.45 -51.93 -0.34 0.37 16 36 H 0.05 0.95 7.45 -51.93 -0.39 0.56 16 37 H 0.33 6.91 8.46 -39.29 -0.33 6.58 16 38 H 0.02 0.44 7.92 -51.92 -0.41 0.02 16 39 H -0.02 -0.67 7.30 -51.93 -0.38 -1.05 16 40 H 0.27 8.23 7.22 -40.82 -0.29 7.94 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.92 6.35 -51.93 -0.33 0.59 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -30.08 320.35 -9.41 -39.49 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.78 Total: 2.37 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: -0.44 Total: -17.11 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: -0.93 Total: -50.16 kcal Atomic # 14 Polarization: 25.67 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.08 -9.41 -39.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252436416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.213 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds