Wall clock time and date at job start Mon Mar 30 2020 03:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46893 * 109.47071 * 2 1 4 4 C 1.46848 * 111.00385 * 294.20662 * 3 2 1 5 5 C 1.53032 * 109.52876 * 174.15975 * 4 3 2 6 6 C 1.53122 * 109.27329 * 59.18578 * 5 4 3 7 7 C 1.53119 * 109.15984 * 302.34351 * 6 5 4 8 8 H 1.09003 * 109.53762 * 297.69946 * 7 6 5 9 9 C 1.53003 * 109.50271 * 177.59796 * 7 6 5 10 10 H 1.09002 * 109.46964 * 300.19782 * 9 7 6 11 11 C 1.53001 * 109.47005 * 180.19969 * 9 7 6 12 12 N 1.46897 * 109.47100 * 60.19792 * 9 7 6 13 13 C 1.46901 * 111.00139 * 204.99699 * 12 9 7 14 14 C 1.50696 * 109.47265 * 179.97438 * 13 12 9 15 15 H 1.07997 * 120.00012 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99842 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00069 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99806 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00621 * 18 16 14 20 20 H 1.48503 * 109.47399 * 210.00111 * 18 16 14 21 21 H 1.48498 * 109.47295 * 330.00717 * 18 16 14 22 22 C 1.46849 * 110.99794 * 170.00362 * 3 2 1 23 23 H 1.08996 * 109.46842 * 59.99881 * 1 2 3 24 24 H 1.08994 * 109.47301 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46838 * 299.99971 * 1 2 3 26 26 H 1.09002 * 109.46838 * 240.00029 * 2 1 3 27 27 H 1.08996 * 109.46842 * 120.00119 * 2 1 3 28 28 H 1.08999 * 109.46833 * 294.18578 * 4 3 2 29 29 H 1.09006 * 109.45631 * 54.15622 * 4 3 2 30 30 H 1.09005 * 109.50796 * 179.12505 * 5 4 3 31 31 H 1.09003 * 109.50632 * 299.24513 * 5 4 3 32 32 H 1.09000 * 109.52205 * 182.44437 * 6 5 4 33 33 H 1.08999 * 109.52659 * 62.24891 * 6 5 4 34 34 H 1.09002 * 109.47107 * 299.99726 * 11 9 7 35 35 H 1.08995 * 109.47522 * 59.99813 * 11 9 7 36 36 H 1.08998 * 109.47143 * 180.02562 * 11 9 7 37 37 H 1.00899 * 110.99868 * 81.04746 * 12 9 7 38 38 H 1.09008 * 109.46741 * 60.00031 * 13 12 9 39 39 H 1.08991 * 109.47293 * 300.00330 * 13 12 9 40 40 H 0.97000 * 119.99838 * 359.97438 * 17 16 14 41 41 H 1.08997 * 109.46683 * 65.82150 * 22 3 2 42 42 H 1.09002 * 109.46095 * 305.84845 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6652 2.0685 -1.2504 5 6 2.0608 3.5439 -1.1567 6 6 3.5677 3.6482 -0.9058 7 6 3.9176 2.8874 0.3761 8 1 3.4080 3.3467 1.2232 9 6 5.4300 2.9359 0.6022 10 1 5.9390 2.4777 -0.2458 11 6 5.7793 2.1713 1.8806 12 7 5.8607 4.3340 0.7347 13 6 7.2742 4.4868 0.3648 14 6 7.6787 5.9310 0.5123 15 1 6.9581 6.6621 0.8477 16 6 8.9692 6.3186 0.2200 17 7 9.8469 5.4282 -0.1880 18 14 9.4709 8.1086 0.4035 19 1 9.9770 8.3421 1.7800 20 1 10.5397 8.4262 -0.5773 21 1 8.2950 8.9804 0.1539 22 6 3.4681 1.4310 0.2380 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 2.1943 1.6027 -2.0817 29 1 0.5904 1.9906 -1.4147 30 1 1.8117 4.0476 -2.0908 31 1 1.5215 4.0138 -0.3342 32 1 3.8469 4.6960 -0.7952 33 1 4.1080 3.2130 -1.7466 34 1 5.2703 2.6295 2.7286 35 1 5.4598 1.1339 1.7824 36 1 6.8567 2.2062 2.0420 37 1 5.6922 4.6774 1.6684 38 1 7.4147 4.1743 -0.6701 39 1 7.8896 3.8682 1.0178 40 1 9.5864 4.4986 -0.2829 41 1 3.9888 0.9682 -0.6002 42 1 3.7028 0.8900 1.1547 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252436416.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:51 Heat of formation + Delta-G solvation = -42.207294 kcal Electronic energy + Delta-G solvation = -17932.278689 eV Core-core repulsion = 15331.060280 eV Total energy + Delta-G solvation = -2601.218409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.48993 -38.04301 -35.62871 -34.45711 -32.52929 -30.84430 -29.65979 -27.58339 -25.33874 -24.91409 -23.75413 -22.65053 -21.27086 -20.71265 -18.98340 -17.13367 -16.58283 -16.10363 -15.93425 -15.62044 -15.39046 -15.00978 -14.93285 -14.66488 -14.27593 -14.10698 -13.75127 -13.51627 -13.34441 -12.91415 -12.74476 -12.59506 -12.50054 -12.40843 -12.26893 -11.98227 -11.92068 -11.79536 -11.49497 -11.15895 -11.14101 -10.71063 -10.61896 -9.28473 -9.13647 -8.71372 -6.42053 1.52839 1.62472 1.80933 2.55186 2.87165 3.13116 3.46446 3.73684 3.90486 4.00332 4.17745 4.18604 4.27448 4.36287 4.37595 4.45629 4.54959 4.58889 4.63748 4.71084 4.73736 4.78437 4.84610 4.90917 4.91416 5.03198 5.05681 5.11668 5.14947 5.21804 5.28173 5.36264 5.49075 5.54210 5.75494 6.02435 6.13349 6.19649 6.40299 6.57122 6.72352 7.40356 8.68126 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.046934 B = 0.004516 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.434002 B = 6198.990589 C = 6538.560468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.544 5.544 4 C 0.055 3.945 5 C -0.111 4.111 6 C -0.105 4.105 7 C -0.056 4.056 8 H 0.073 0.927 9 C 0.085 3.915 10 H 0.046 0.954 11 C -0.172 4.172 12 N -0.672 5.672 13 C 0.200 3.800 14 C -0.609 4.609 15 H 0.056 0.944 16 C -0.039 4.039 17 N -0.938 5.938 18 Si 1.126 2.874 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.270 1.270 22 C 0.067 3.933 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.078 0.922 28 H 0.024 0.976 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.031 0.969 37 H 0.335 0.665 38 H -0.011 1.011 39 H -0.043 1.043 40 H 0.253 0.747 41 H 0.022 0.978 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.319 -9.843 0.799 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.269 5.269 4 C -0.072 4.072 5 C -0.148 4.148 6 C -0.143 4.143 7 C -0.075 4.075 8 H 0.091 0.909 9 C -0.026 4.026 10 H 0.065 0.935 11 C -0.230 4.230 12 N -0.302 5.302 13 C 0.071 3.929 14 C -0.647 4.647 15 H 0.074 0.926 16 C -0.236 4.236 17 N -0.575 5.575 18 Si 0.947 3.053 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.195 1.195 22 C -0.061 4.061 23 H 0.074 0.926 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.096 0.904 28 H 0.043 0.957 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.152 0.848 38 H 0.007 0.993 39 H -0.026 1.026 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.537 -8.390 0.380 19.445 hybrid contribution 0.147 -2.102 0.074 2.109 sum -17.391 -10.493 0.454 20.316 Atomic orbital electron populations 1.21769 0.93666 1.02320 1.02313 1.22149 0.97071 0.87971 1.00850 1.61967 1.13240 1.16372 1.35356 1.22161 1.01288 0.94215 0.89570 1.21570 0.95115 0.95984 1.02179 1.21424 0.95956 1.00587 0.96303 1.20959 0.92790 0.95183 0.98583 0.90867 1.21599 0.95851 0.88381 0.96744 0.93549 1.22444 1.00319 1.01879 0.98406 1.60488 1.19886 1.18260 1.31520 1.19309 0.85245 0.95687 0.92619 1.22408 0.98777 0.94676 1.48840 0.92597 1.27486 0.93222 1.10116 0.92739 1.70901 1.37514 1.03440 1.45687 0.82823 0.75961 0.69071 0.77481 1.19628 1.20845 1.19457 1.22087 0.87503 0.96036 1.00512 0.92552 0.90937 0.92264 0.95190 0.90403 0.95732 0.89069 0.90787 0.91307 0.92531 0.94482 0.91552 0.90192 0.95021 0.84768 0.99324 1.02593 0.93813 0.95935 0.89773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.84 71.98 0.71 -1.32 16 2 C 0.05 0.83 5.68 86.31 0.49 1.32 16 3 N -0.54 -12.08 4.66 -896.36 -4.17 -16.25 16 4 C 0.06 1.18 5.29 86.32 0.46 1.64 16 5 C -0.11 -2.66 6.09 30.65 0.19 -2.47 16 6 C -0.10 -3.22 5.09 30.68 0.16 -3.07 16 7 C -0.06 -1.64 2.12 -10.74 -0.02 -1.67 16 8 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 9 C 0.09 3.01 2.17 44.92 0.10 3.11 16 10 H 0.05 1.82 7.80 -2.39 -0.02 1.80 16 11 C -0.17 -5.29 8.81 71.98 0.63 -4.66 16 12 N -0.67 -29.29 5.53 -495.58 -2.74 -32.03 16 13 C 0.20 10.84 4.55 85.56 0.39 11.22 16 14 C -0.61 -35.69 9.32 25.60 0.24 -35.46 16 15 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 16 C -0.04 -2.27 5.46 84.65 0.46 -1.81 16 17 N -0.94 -59.22 13.65 21.45 0.29 -58.92 16 18 Si 1.13 51.19 29.90 68.60 2.05 53.25 16 19 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 22 C 0.07 1.66 4.36 86.33 0.38 2.04 16 23 H 0.06 0.78 6.43 -2.39 -0.02 0.77 16 24 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 27 H 0.08 1.29 7.99 -2.39 -0.02 1.27 16 28 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.09 1.63 6.21 -2.38 -0.01 1.61 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.06 2.03 7.70 -2.39 -0.02 2.01 16 33 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.07 1.88 8.13 -2.39 -0.02 1.87 16 35 H 0.08 2.02 6.45 -2.39 -0.02 2.00 16 36 H 0.03 1.11 7.45 -2.39 -0.02 1.09 16 37 H 0.33 14.11 8.46 -89.69 -0.76 13.35 16 38 H -0.01 -0.67 7.92 -2.38 -0.02 -0.68 16 39 H -0.04 -2.49 7.30 -2.39 -0.02 -2.51 16 40 H 0.25 16.23 7.22 -92.71 -0.67 15.56 16 41 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.08 1.91 6.35 -2.39 -0.02 1.89 16 Total: -1.00 -65.37 320.35 -0.09 -65.46 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.30 Total: 19.62 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 4.17 Total: -31.11 kcal Atomic # 7 Polarization: -100.59 SS G_CDS: -6.62 Total: -107.21 kcal Atomic # 14 Polarization: 51.19 SS G_CDS: 2.05 Total: 53.25 kcal Total: -65.37 -0.09 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252436416.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.253 kcal (2) G-P(sol) polarization free energy of solvation -65.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds