Wall clock time and date at job start Mon Mar 30 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46921 * 2 1 4 4 C 1.47844 * 110.99627 * 51.03364 * 3 2 1 5 5 C 1.54910 * 104.79339 * 146.36418 * 4 3 2 6 6 C 1.55141 * 101.64965 * 322.92436 * 5 4 3 7 7 C 1.47439 * 110.99715 * 171.87112 * 3 2 1 8 8 H 1.08998 * 109.88486 * 117.17659 * 7 3 2 9 9 C 1.53002 * 109.88973 * 356.15376 * 7 3 2 10 10 N 1.46893 * 109.47471 * 63.89591 * 9 7 3 11 11 C 1.46902 * 110.99929 * 66.04568 * 10 9 7 12 12 C 1.46900 * 111.00336 * 189.99881 * 10 9 7 13 13 H 1.09001 * 109.46756 * 55.00474 * 12 10 9 14 14 C 1.53001 * 109.47321 * 295.00437 * 12 10 9 15 15 C 1.50701 * 109.47058 * 174.99847 * 12 10 9 16 16 H 1.07996 * 120.00629 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99716 * 180.27550 * 15 12 10 18 18 N 1.31520 * 120.00362 * 359.73104 * 17 15 12 19 19 Si 1.86801 * 119.99950 * 179.72636 * 17 15 12 20 20 H 1.48492 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46966 * 120.00602 * 19 17 15 22 22 H 1.48502 * 109.47228 * 239.99903 * 19 17 15 23 23 H 1.09004 * 109.47099 * 299.99464 * 1 2 3 24 24 H 1.08994 * 109.47523 * 59.99712 * 1 2 3 25 25 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46790 * 240.00346 * 2 1 3 27 27 H 1.08996 * 109.47032 * 120.00143 * 2 1 3 28 28 H 1.09007 * 110.37305 * 265.18597 * 4 3 2 29 29 H 1.09000 * 110.37691 * 27.53058 * 4 3 2 30 30 H 1.08998 * 110.99326 * 81.01737 * 5 4 3 31 31 H 1.09002 * 110.98973 * 204.83738 * 5 4 3 32 32 H 1.09004 * 110.70704 * 277.26792 * 6 5 4 33 33 H 1.09002 * 110.70049 * 154.04134 * 6 5 4 34 34 H 1.09004 * 109.46769 * 303.89751 * 9 7 3 35 35 H 1.09000 * 109.47053 * 183.89966 * 9 7 3 36 36 H 1.09001 * 109.47170 * 183.95185 * 11 10 9 37 37 H 1.08993 * 109.47485 * 303.95563 * 11 10 9 38 38 H 1.09005 * 109.47180 * 63.95424 * 11 10 9 39 39 H 1.09004 * 109.46752 * 299.99786 * 14 12 10 40 40 H 1.08995 * 109.46867 * 59.99597 * 14 12 10 41 41 H 1.09003 * 109.46831 * 179.97438 * 14 12 10 42 42 H 0.97000 * 120.00428 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3779 2.1738 1.0732 5 6 2.4673 3.1738 1.5346 6 6 3.7504 2.3076 1.4341 7 6 3.4805 1.4290 0.1946 8 1 3.9585 1.8645 -0.6828 9 6 4.0168 0.0157 0.4316 10 7 3.7910 -0.8013 -0.7680 11 6 4.5902 -0.3092 -1.8982 12 6 4.0733 -2.2180 -0.5010 13 1 3.4822 -2.5517 0.3518 14 6 5.5612 -2.3917 -0.1896 15 6 3.7145 -3.0388 -1.7129 16 1 3.3169 -2.5564 -2.5935 17 6 3.8889 -4.4064 -1.6955 18 7 4.3734 -4.9940 -0.6232 19 14 3.4370 -5.4247 -3.1949 20 1 2.9177 -4.5317 -4.2616 21 1 4.6416 -6.1382 -3.6900 22 1 2.3930 -6.4140 -2.8251 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5116 2.7092 0.6844 29 1 1.0849 1.5244 1.8981 30 1 2.5208 4.0304 0.8628 31 1 2.2925 3.4951 2.5614 32 1 3.8700 1.6911 2.3251 33 1 4.6278 2.9353 1.2780 34 1 3.4981 -0.4323 1.2792 35 1 5.0850 0.0632 0.6432 36 1 4.3518 -0.8875 -2.7909 37 1 4.3618 0.7418 -2.0744 38 1 5.6502 -0.4170 -1.6678 39 1 6.1523 -2.0579 -1.0425 40 1 5.8206 -1.7980 0.6869 41 1 5.7705 -3.4428 0.0090 42 1 4.4965 -5.9561 -0.6111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252577655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:36 Heat of formation + Delta-G solvation = 24.942043 kcal Electronic energy + Delta-G solvation = -18903.963661 eV Core-core repulsion = 16305.657066 eV Total energy + Delta-G solvation = -2598.306595 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.54260 -36.64645 -32.87951 -32.78311 -30.26034 -28.18766 -28.09284 -25.91566 -25.18071 -23.45257 -22.23519 -20.72039 -19.54532 -18.48181 -16.19054 -16.14125 -15.41878 -14.90875 -14.47382 -14.06163 -13.80031 -13.54656 -12.95497 -12.70161 -12.42200 -12.16441 -11.88001 -11.53500 -11.34922 -11.12488 -11.01812 -10.88354 -10.83547 -10.73487 -10.69613 -10.49355 -10.39660 -10.38802 -10.10915 -9.94580 -9.68453 -8.83268 -8.38401 -7.68722 -6.95810 -6.00664 -4.04210 3.30509 3.38705 3.43359 4.37603 4.45448 4.86439 4.91781 5.00665 5.26948 5.32321 5.46493 5.68665 5.75314 5.79282 5.85732 5.88619 5.95264 6.02089 6.07669 6.12013 6.17873 6.24897 6.31858 6.45253 6.48267 6.57192 6.69494 6.80657 6.83670 6.95039 7.11246 7.23341 7.48073 7.64804 7.70899 7.73546 7.84906 8.12362 8.38104 8.59613 9.02494 9.61153 11.06559 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.006894 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.982271 B = 4060.381937 C = 4472.624213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.034 3.966 3 N -0.515 5.515 4 C 0.038 3.962 5 C -0.129 4.129 6 C -0.139 4.139 7 C 0.077 3.923 8 H 0.081 0.919 9 C 0.036 3.964 10 N -0.522 5.522 11 C 0.031 3.969 12 C 0.208 3.792 13 H 0.037 0.963 14 C -0.172 4.172 15 C -0.497 4.497 16 H 0.064 0.936 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.285 1.285 23 H 0.038 0.962 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.136 0.864 27 H 0.031 0.969 28 H 0.071 0.929 29 H 0.040 0.960 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.016 0.984 39 H 0.030 0.970 40 H 0.005 0.995 41 H 0.087 0.913 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.549 12.335 3.520 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.093 4.093 3 N -0.240 5.240 4 C -0.090 4.090 5 C -0.167 4.167 6 C -0.178 4.178 7 C -0.031 4.031 8 H 0.099 0.901 9 C -0.093 4.093 10 N -0.245 5.245 11 C -0.118 4.118 12 C 0.102 3.898 13 H 0.055 0.945 14 C -0.231 4.231 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.211 1.211 23 H 0.057 0.943 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.154 0.846 27 H 0.049 0.951 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.034 0.966 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.105 0.895 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.136 12.374 2.956 13.103 hybrid contribution 0.929 -1.133 0.418 1.524 sum -2.207 11.241 3.374 11.942 Atomic orbital electron populations 1.21951 0.97378 1.01082 1.00627 1.22923 0.92812 0.88327 1.05225 1.63794 1.03441 1.13404 1.43315 1.23062 0.97319 0.95231 0.93351 1.22680 0.95124 0.98202 1.00710 1.22840 0.98049 0.98212 0.98667 1.22478 0.89213 0.94721 0.96731 0.90063 1.22494 0.98125 0.93525 0.95144 1.62690 1.53625 1.04680 1.03484 1.22282 0.94817 0.98673 0.95994 1.19321 0.91237 0.81939 0.97276 0.94538 1.22390 1.00549 1.03504 0.96639 1.21158 1.41445 0.91227 0.99736 0.91795 1.24929 0.95359 0.97891 0.96124 1.69900 1.45802 1.09911 1.27860 0.86489 0.77964 0.80197 0.83050 1.19694 1.21269 1.21120 0.94291 0.92816 0.92625 0.84634 0.95121 0.91065 0.94174 0.91088 0.91582 0.91654 0.91315 0.91396 0.95205 0.90930 0.93505 0.96577 0.95053 0.97578 0.89484 0.93128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.62 37.16 0.36 -1.99 16 2 C 0.03 0.60 4.35 -3.82 -0.02 0.59 16 3 N -0.51 -8.20 5.30 -223.35 -1.18 -9.39 16 4 C 0.04 0.51 5.31 -2.30 -0.01 0.50 16 5 C -0.13 -1.49 7.08 -24.59 -0.17 -1.66 16 6 C -0.14 -1.77 6.47 -24.91 -0.16 -1.93 16 7 C 0.08 1.20 3.36 -66.73 -0.22 0.97 16 8 H 0.08 1.30 6.38 -51.93 -0.33 0.97 16 9 C 0.04 0.65 2.97 -3.83 -0.01 0.64 16 10 N -0.52 -10.71 1.52 -236.29 -0.36 -11.07 16 11 C 0.03 0.60 8.70 60.07 0.52 1.12 16 12 C 0.21 5.09 2.34 -68.86 -0.16 4.93 16 13 H 0.04 0.99 8.03 -51.93 -0.42 0.58 16 14 C -0.17 -4.12 8.28 37.16 0.31 -3.81 16 15 C -0.50 -13.26 7.93 -34.44 -0.27 -13.53 16 16 H 0.06 1.72 6.75 -52.49 -0.35 1.36 16 17 C 0.06 1.57 5.31 -17.82 -0.09 1.48 16 18 N -0.90 -25.30 11.33 55.43 0.63 -24.68 16 19 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 H 0.04 0.54 6.57 -51.93 -0.34 0.20 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.14 2.80 5.75 -51.93 -0.30 2.50 16 27 H 0.03 0.58 5.88 -51.93 -0.31 0.28 16 28 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.04 0.55 7.14 -51.93 -0.37 0.18 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.84 7.85 -51.93 -0.41 0.43 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 1.28 6.19 -51.93 -0.32 0.96 16 35 H 0.03 0.54 6.94 -51.93 -0.36 0.18 16 36 H 0.07 1.51 6.53 -51.93 -0.34 1.17 16 37 H 0.05 0.81 6.25 -51.93 -0.32 0.49 16 38 H 0.02 0.31 6.28 -51.93 -0.33 -0.02 16 39 H 0.03 0.73 6.39 -51.93 -0.33 0.40 16 40 H 0.01 0.12 6.75 -51.93 -0.35 -0.23 16 41 H 0.09 2.32 6.08 -51.93 -0.32 2.01 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 303.65 15.07 4.58 4.58 Total: -1.00 -26.94 303.65 -8.47 -35.41 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.17 Total: 1.66 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: 0.06 Total: -12.70 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.91 Total: -45.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -26.94 -8.47 -35.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252577655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.348 kcal (2) G-P(sol) polarization free energy of solvation -26.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds