Wall clock time and date at job start Mon Mar 30 2020 03:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46903 * 109.46921 * 2 1 4 4 C 1.47844 * 110.99627 * 51.03364 * 3 2 1 5 5 C 1.54910 * 104.79339 * 146.36418 * 4 3 2 6 6 C 1.55141 * 101.64965 * 322.92436 * 5 4 3 7 7 C 1.47439 * 110.99715 * 171.87112 * 3 2 1 8 8 H 1.08998 * 109.88486 * 117.17659 * 7 3 2 9 9 C 1.53002 * 109.88973 * 356.15376 * 7 3 2 10 10 N 1.46893 * 109.47471 * 63.89591 * 9 7 3 11 11 C 1.46902 * 110.99929 * 66.04568 * 10 9 7 12 12 C 1.46900 * 111.00336 * 189.99881 * 10 9 7 13 13 H 1.09001 * 109.46756 * 55.00474 * 12 10 9 14 14 C 1.53001 * 109.47321 * 295.00437 * 12 10 9 15 15 C 1.50701 * 109.47058 * 174.99847 * 12 10 9 16 16 H 1.07996 * 120.00629 * 0.02562 * 15 12 10 17 17 C 1.37877 * 119.99716 * 180.27550 * 15 12 10 18 18 N 1.31520 * 120.00362 * 359.73104 * 17 15 12 19 19 Si 1.86801 * 119.99950 * 179.72636 * 17 15 12 20 20 H 1.48492 * 109.47261 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.46966 * 120.00602 * 19 17 15 22 22 H 1.48502 * 109.47228 * 239.99903 * 19 17 15 23 23 H 1.09004 * 109.47099 * 299.99464 * 1 2 3 24 24 H 1.08994 * 109.47523 * 59.99712 * 1 2 3 25 25 H 1.09004 * 109.47426 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46790 * 240.00346 * 2 1 3 27 27 H 1.08996 * 109.47032 * 120.00143 * 2 1 3 28 28 H 1.09007 * 110.37305 * 265.18597 * 4 3 2 29 29 H 1.09000 * 110.37691 * 27.53058 * 4 3 2 30 30 H 1.08998 * 110.99326 * 81.01737 * 5 4 3 31 31 H 1.09002 * 110.98973 * 204.83738 * 5 4 3 32 32 H 1.09004 * 110.70704 * 277.26792 * 6 5 4 33 33 H 1.09002 * 110.70049 * 154.04134 * 6 5 4 34 34 H 1.09004 * 109.46769 * 303.89751 * 9 7 3 35 35 H 1.09000 * 109.47053 * 183.89966 * 9 7 3 36 36 H 1.09001 * 109.47170 * 183.95185 * 11 10 9 37 37 H 1.08993 * 109.47485 * 303.95563 * 11 10 9 38 38 H 1.09005 * 109.47180 * 63.95424 * 11 10 9 39 39 H 1.09004 * 109.46752 * 299.99786 * 14 12 10 40 40 H 1.08995 * 109.46867 * 59.99597 * 14 12 10 41 41 H 1.09003 * 109.46831 * 179.97438 * 14 12 10 42 42 H 0.97000 * 120.00428 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3779 2.1738 1.0732 5 6 2.4673 3.1738 1.5346 6 6 3.7504 2.3076 1.4341 7 6 3.4805 1.4290 0.1946 8 1 3.9585 1.8645 -0.6828 9 6 4.0168 0.0157 0.4316 10 7 3.7910 -0.8013 -0.7680 11 6 4.5902 -0.3092 -1.8982 12 6 4.0733 -2.2180 -0.5010 13 1 3.4822 -2.5517 0.3518 14 6 5.5612 -2.3917 -0.1896 15 6 3.7145 -3.0388 -1.7129 16 1 3.3169 -2.5564 -2.5935 17 6 3.8889 -4.4064 -1.6955 18 7 4.3734 -4.9940 -0.6232 19 14 3.4370 -5.4247 -3.1949 20 1 2.9177 -4.5317 -4.2616 21 1 4.6416 -6.1382 -3.6900 22 1 2.3930 -6.4140 -2.8251 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 0.5116 2.7092 0.6844 29 1 1.0849 1.5244 1.8981 30 1 2.5208 4.0304 0.8628 31 1 2.2925 3.4951 2.5614 32 1 3.8700 1.6911 2.3251 33 1 4.6278 2.9353 1.2780 34 1 3.4981 -0.4323 1.2792 35 1 5.0850 0.0632 0.6432 36 1 4.3518 -0.8875 -2.7909 37 1 4.3618 0.7418 -2.0744 38 1 5.6502 -0.4170 -1.6678 39 1 6.1523 -2.0579 -1.0425 40 1 5.8206 -1.7980 0.6869 41 1 5.7705 -3.4428 0.0090 42 1 4.4965 -5.9561 -0.6111 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252577655.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:36 Heat of formation + Delta-G solvation = 9.432677 kcal Electronic energy + Delta-G solvation = -18904.636198 eV Core-core repulsion = 16305.657066 eV Total energy + Delta-G solvation = -2598.979132 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.86298 -38.27237 -34.76463 -34.06545 -31.81574 -29.85251 -29.32567 -27.54799 -27.09431 -24.94075 -23.62178 -21.80999 -21.28909 -19.87755 -18.20708 -17.44054 -16.91532 -16.42690 -16.18633 -15.46699 -15.22446 -15.10542 -14.57526 -14.04218 -13.96274 -13.51873 -13.37789 -13.13121 -12.94557 -12.76227 -12.63015 -12.57578 -12.38364 -12.18273 -12.07778 -11.97273 -11.89979 -11.74216 -11.63171 -11.48107 -11.33093 -10.82931 -10.48874 -8.97266 -8.61786 -8.09987 -6.19985 1.41287 1.43862 1.55271 2.43621 3.15982 3.20003 3.49019 3.82157 3.86798 4.03748 4.28745 4.41421 4.48862 4.56353 4.61202 4.62973 4.68568 4.73236 4.79015 4.83248 4.88284 4.88362 4.98348 5.06521 5.07995 5.15436 5.16989 5.22609 5.28714 5.39573 5.50389 5.54943 5.70755 5.79022 5.82853 6.18603 6.33405 6.43626 6.49649 6.75259 6.94491 7.49404 8.96620 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.032627 B = 0.006894 C = 0.006259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.982271 B = 4060.381937 C = 4472.624213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.043 3.957 3 N -0.522 5.522 4 C 0.035 3.965 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.079 3.921 8 H 0.081 0.919 9 C 0.043 3.957 10 N -0.523 5.523 11 C 0.038 3.962 12 C 0.217 3.783 13 H 0.001 0.999 14 C -0.158 4.158 15 C -0.507 4.507 16 H 0.058 0.942 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.957 3.043 20 H -0.267 1.267 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.048 0.952 26 H 0.104 0.896 27 H 0.009 0.991 28 H 0.082 0.918 29 H 0.036 0.964 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.087 0.913 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.014 0.986 39 H 0.032 0.968 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.908 14.258 3.376 14.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 N -0.247 5.247 4 C -0.093 4.093 5 C -0.157 4.157 6 C -0.174 4.174 7 C -0.029 4.029 8 H 0.099 0.901 9 C -0.086 4.086 10 N -0.246 5.246 11 C -0.111 4.111 12 C 0.110 3.890 13 H 0.019 0.981 14 C -0.217 4.217 15 C -0.546 4.546 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.563 5.563 19 Si 0.783 3.217 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.067 0.933 26 H 0.121 0.879 27 H 0.027 0.973 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.047 0.953 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.040 0.960 41 H 0.078 0.922 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.499 14.320 2.812 15.007 hybrid contribution 1.028 -1.688 0.492 2.036 sum -2.471 12.633 3.304 13.290 Atomic orbital electron populations 1.21867 0.95690 1.01052 1.01698 1.22619 0.94232 0.89063 1.02553 1.63774 1.03795 1.12282 1.44814 1.23159 0.98281 0.95322 0.92528 1.22667 0.93161 0.97595 1.02240 1.22825 0.99628 0.98041 0.96881 1.22476 0.88983 0.93200 0.98266 0.90107 1.22488 0.97964 0.94636 0.93513 1.62643 1.53987 1.03034 1.04910 1.22229 0.94407 0.99686 0.94734 1.19022 0.90690 0.84186 0.95142 0.98086 1.22200 1.00342 1.01895 0.97304 1.21399 1.41183 0.91807 1.00182 0.92343 1.25672 0.95386 0.99024 0.98672 1.70026 1.46671 1.10108 1.29541 0.85523 0.77660 0.78595 0.79945 1.19135 1.20866 1.20911 0.92529 0.92307 0.93265 0.87853 0.97275 0.89937 0.94582 0.90020 0.89430 0.91965 0.89467 0.92865 0.95307 0.92670 0.91043 0.96722 0.94851 0.96005 0.92235 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.37 9.62 71.98 0.69 -3.68 16 2 C 0.04 1.52 4.35 86.30 0.38 1.90 16 3 N -0.52 -15.87 5.30 -860.54 -4.56 -20.43 16 4 C 0.03 0.84 5.31 86.77 0.46 1.30 16 5 C -0.12 -2.31 7.08 31.98 0.23 -2.09 16 6 C -0.13 -3.06 6.47 31.77 0.21 -2.85 16 7 C 0.08 2.33 3.36 45.26 0.15 2.48 16 8 H 0.08 2.40 6.38 -2.39 -0.02 2.38 16 9 C 0.04 1.54 2.97 86.31 0.26 1.79 16 10 N -0.52 -21.75 1.52 -901.47 -1.37 -23.12 16 11 C 0.04 1.44 8.70 127.69 1.11 2.55 16 12 C 0.22 10.90 2.34 44.17 0.10 11.00 16 13 H 0.00 0.07 8.03 -2.39 -0.02 0.05 16 14 C -0.16 -7.72 8.28 71.98 0.60 -7.13 16 15 C -0.51 -27.63 7.93 25.60 0.20 -27.43 16 16 H 0.06 3.19 6.75 -2.91 -0.02 3.17 16 17 C 0.01 0.58 5.31 84.65 0.45 1.03 16 18 N -0.92 -53.33 11.33 21.45 0.24 -53.09 16 19 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H 0.06 1.48 6.57 -2.38 -0.02 1.47 16 24 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 25 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 26 H 0.10 4.36 5.75 -2.39 -0.01 4.35 16 27 H 0.01 0.36 5.88 -2.39 -0.01 0.34 16 28 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.04 0.91 7.14 -2.39 -0.02 0.89 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.46 7.85 -2.39 -0.02 1.45 16 33 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 2.06 6.19 -2.38 -0.01 2.04 16 35 H 0.03 1.03 6.94 -2.39 -0.02 1.01 16 36 H 0.05 2.30 6.53 -2.39 -0.02 2.28 16 37 H 0.07 2.38 6.25 -2.39 -0.01 2.36 16 38 H 0.01 0.56 6.28 -2.38 -0.01 0.54 16 39 H 0.03 1.57 6.39 -2.38 -0.02 1.55 16 40 H 0.02 0.95 6.75 -2.39 -0.02 0.93 16 41 H 0.06 3.25 6.08 -2.39 -0.01 3.24 16 42 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -58.31 303.65 2.15 -56.16 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 0.98 Total: 15.62 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: 4.83 Total: -21.11 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -5.69 Total: -96.64 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -58.31 2.15 -56.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252577655.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.588 kcal (2) G-P(sol) polarization free energy of solvation -58.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds