Wall clock time and date at job start Mon Mar 30 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47002 * 2 1 4 4 C 1.46898 * 111.00055 * 293.95185 * 3 2 1 5 5 C 1.53000 * 109.47155 * 173.80048 * 4 3 2 6 6 C 1.46906 * 110.99826 * 170.00150 * 3 2 1 7 7 H 1.08992 * 109.52336 * 150.20039 * 6 3 2 8 8 C 1.53117 * 109.52143 * 270.32304 * 6 3 2 9 9 C 1.53037 * 109.28110 * 177.55967 * 8 6 3 10 10 N 1.46846 * 109.52227 * 300.82590 * 9 8 6 11 11 C 1.46898 * 110.99961 * 185.83873 * 10 9 8 12 12 C 1.46846 * 111.20238 * 61.73514 * 10 9 8 13 13 C 1.53037 * 109.52250 * 298.26346 * 12 10 9 14 14 H 1.08995 * 109.50224 * 299.23279 * 13 12 10 15 15 C 1.50698 * 109.50047 * 179.12051 * 13 12 10 16 16 H 1.08006 * 119.99744 * 246.27457 * 15 13 12 17 17 C 1.37879 * 120.00464 * 66.26829 * 15 13 12 18 18 N 1.31514 * 119.99736 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00253 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46898 * 90.00219 * 19 17 15 21 21 H 1.48497 * 109.47190 * 210.00357 * 19 17 15 22 22 H 1.48497 * 109.46904 * 330.00219 * 19 17 15 23 23 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 60.00406 * 1 2 3 25 25 H 1.09000 * 109.46844 * 299.99591 * 1 2 3 26 26 H 1.09001 * 109.47134 * 120.00093 * 2 1 3 27 27 H 1.09000 * 109.47079 * 239.99477 * 2 1 3 28 28 H 1.08995 * 109.47464 * 293.80445 * 4 3 2 29 29 H 1.09001 * 109.46484 * 53.80297 * 4 3 2 30 30 H 1.08997 * 109.46921 * 55.34478 * 5 4 3 31 31 H 1.08998 * 109.46926 * 175.34581 * 5 4 3 32 32 H 1.09006 * 109.47299 * 295.34995 * 5 4 3 33 33 H 1.09001 * 109.50876 * 297.50419 * 8 6 3 34 34 H 1.09001 * 109.50882 * 57.57852 * 8 6 3 35 35 H 1.09004 * 109.46045 * 60.83841 * 9 8 6 36 36 H 1.08998 * 109.46475 * 180.81195 * 9 8 6 37 37 H 1.08999 * 109.47694 * 63.94595 * 11 10 9 38 38 H 1.09003 * 109.47408 * 183.95082 * 11 10 9 39 39 H 1.09000 * 109.46948 * 303.94869 * 11 10 9 40 40 H 1.09001 * 109.45832 * 58.27766 * 12 10 9 41 41 H 1.08994 * 109.46214 * 178.24938 * 12 10 9 42 42 H 0.97000 * 120.00107 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.0576 3.5438 -1.1555 6 6 3.4686 1.4311 0.2381 7 1 3.8922 2.3025 -0.2611 8 6 3.7371 1.5225 1.7428 9 6 5.2476 1.5089 1.9882 10 7 5.8219 0.2715 1.4446 11 6 7.2468 0.1592 1.7835 12 6 5.6177 0.1842 -0.0070 13 6 4.1183 0.1584 -0.3119 14 1 3.6660 -0.7140 0.1596 15 6 3.9091 0.0906 -1.8027 16 1 3.4545 0.9211 -2.3226 17 6 4.2983 -1.0314 -2.5032 18 7 4.8515 -2.0427 -1.8702 19 14 4.0384 -1.1157 -4.3512 20 1 5.2340 -0.5724 -5.0444 21 1 3.8298 -2.5286 -4.7578 22 1 2.8448 -0.3130 -4.7202 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 2.2079 1.6042 -2.0809 29 1 0.5971 1.9833 -1.4253 30 1 3.1144 3.6261 -0.9016 31 1 1.8749 4.0315 -2.1131 32 1 1.4595 4.0259 -0.3822 33 1 3.3135 2.4481 2.1326 34 1 3.2783 0.6719 2.2468 35 1 5.7034 2.3678 1.4956 36 1 5.4420 1.5593 3.0596 37 1 7.3581 0.0812 2.8650 38 1 7.6640 -0.7297 1.3103 39 1 7.7759 1.0429 1.4267 40 1 6.0718 1.0494 -0.4902 41 1 6.0808 -0.7273 -0.3847 42 1 5.1256 -2.8319 -2.3630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259891227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:09 Heat of formation + Delta-G solvation = 10.839132 kcal Electronic energy + Delta-G solvation = -19294.832633 eV Core-core repulsion = 16695.914490 eV Total energy + Delta-G solvation = -2598.918144 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.99531 -36.35392 -33.07417 -31.68623 -31.17516 -29.56158 -27.76833 -25.37743 -24.92420 -22.42337 -21.68543 -21.40694 -19.88863 -17.96712 -16.56974 -15.18145 -14.83600 -14.57687 -14.25106 -14.09165 -13.81681 -13.57703 -13.21408 -12.65371 -12.24697 -12.05878 -11.71136 -11.69757 -11.45045 -11.11944 -11.07379 -10.98514 -10.92402 -10.79141 -10.63170 -10.29664 -10.02883 -9.98064 -9.88387 -9.52787 -9.16315 -8.68833 -8.39844 -7.43952 -7.07010 -6.05491 -4.10089 3.24787 3.32929 3.34696 4.36967 4.79083 4.87369 5.28472 5.64048 5.66841 5.78078 5.86115 5.91583 5.94487 6.04288 6.07910 6.10546 6.16537 6.18544 6.34352 6.36821 6.43086 6.49626 6.53532 6.63798 6.72480 6.77960 6.80013 6.85910 6.90754 6.98106 7.04301 7.27127 7.65437 7.72316 7.85643 7.99456 8.09117 8.16592 8.22103 8.45740 8.94692 9.53055 11.01021 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.012951 C = 0.008596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.960481 B = 2161.556466 C = 3256.432776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.045 3.955 3 N -0.525 5.525 4 C 0.031 3.969 5 C -0.146 4.146 6 C 0.081 3.919 7 H 0.061 0.939 8 C -0.099 4.099 9 C 0.061 3.939 10 N -0.546 5.546 11 C 0.030 3.970 12 C 0.069 3.931 13 C 0.033 3.967 14 H 0.049 0.951 15 C -0.520 4.520 16 H 0.066 0.934 17 C 0.067 3.933 18 N -0.882 5.882 19 Si 0.882 3.118 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.274 1.274 23 H 0.047 0.953 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.063 0.937 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.058 0.942 37 H 0.054 0.946 38 H 0.063 0.937 39 H 0.012 0.988 40 H 0.003 0.997 41 H 0.092 0.908 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 5.828 4.170 7.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.083 4.083 3 N -0.248 5.248 4 C -0.097 4.097 5 C -0.203 4.203 6 C -0.027 4.027 7 H 0.079 0.921 8 C -0.138 4.138 9 C -0.068 4.068 10 N -0.271 5.271 11 C -0.119 4.119 12 C -0.059 4.059 13 C 0.013 3.987 14 H 0.067 0.933 15 C -0.558 4.558 16 H 0.084 0.916 17 C -0.136 4.136 18 N -0.519 5.519 19 Si 0.710 3.290 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.199 1.199 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.038 0.962 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.022 0.978 41 H 0.110 0.890 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.626 5.496 4.732 7.713 hybrid contribution 0.878 0.147 -2.082 2.264 sum -1.748 5.642 2.650 6.474 Atomic orbital electron populations 1.21842 0.97358 1.00215 1.00938 1.22138 0.92961 0.90194 1.02977 1.62343 1.13808 1.15678 1.33003 1.22386 0.99933 0.93808 0.93548 1.21826 1.01581 0.96642 1.00253 1.21873 0.87306 0.99825 0.93729 0.92051 1.21519 0.93788 1.00941 0.97518 1.21993 0.95826 0.90658 0.98281 1.62080 1.13356 1.35205 1.16433 1.22257 0.89556 0.99932 1.00115 1.22374 1.00954 1.00233 0.82321 1.19352 0.90655 0.93527 0.95171 0.93324 1.21358 1.40178 1.01823 0.92449 0.91615 1.24968 0.95056 0.95758 0.97788 1.69933 1.40774 1.05908 1.35322 0.86750 0.78569 0.77297 0.86374 1.20799 1.21231 1.19890 0.93391 0.93465 0.93305 0.91899 0.90784 0.91575 0.92351 0.92599 0.93499 0.93171 0.92764 0.91872 0.96242 0.92324 0.92756 0.91833 0.96946 0.97846 0.88981 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.85 37.16 0.37 -2.05 16 2 C 0.05 0.90 4.18 -3.82 -0.02 0.88 16 3 N -0.52 -10.17 4.35 -226.51 -0.99 -11.15 16 4 C 0.03 0.57 5.28 -3.82 -0.02 0.55 16 5 C -0.15 -2.34 9.91 37.16 0.37 -1.97 16 6 C 0.08 1.66 1.63 -67.59 -0.11 1.55 16 7 H 0.06 1.30 5.54 -51.93 -0.29 1.02 16 8 C -0.10 -1.84 5.65 -26.65 -0.15 -1.99 16 9 C 0.06 1.11 5.46 -3.83 -0.02 1.09 16 10 N -0.55 -11.14 4.91 -242.96 -1.19 -12.34 16 11 C 0.03 0.52 9.62 60.06 0.58 1.10 16 12 C 0.07 1.61 4.57 -3.83 -0.02 1.59 16 13 C 0.03 0.77 1.11 -91.70 -0.10 0.67 16 14 H 0.05 1.30 6.15 -51.93 -0.32 0.98 16 15 C -0.52 -13.19 5.95 -34.44 -0.20 -13.39 16 16 H 0.07 1.66 4.66 -52.48 -0.24 1.42 16 17 C 0.07 1.76 5.33 -17.82 -0.10 1.66 16 18 N -0.88 -24.28 11.80 55.43 0.65 -23.63 16 19 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 23 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.05 0.76 6.43 -51.93 -0.33 0.42 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 1.31 6.80 -51.93 -0.35 0.95 16 27 H 0.07 1.72 5.72 -51.93 -0.30 1.42 16 28 H 0.07 1.40 4.58 -51.93 -0.24 1.16 16 29 H 0.06 1.00 6.21 -51.93 -0.32 0.68 16 30 H 0.06 0.95 5.96 -51.93 -0.31 0.64 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 1.23 7.67 -51.93 -0.40 0.83 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 1.11 8.02 -51.93 -0.42 0.70 16 39 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 40 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 41 H 0.09 2.42 6.50 -51.93 -0.34 2.08 16 42 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 304.41 15.07 4.59 4.59 Total: -1.00 -26.24 304.41 -8.60 -34.85 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.22 Total: 2.44 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 0.57 Total: -10.32 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -1.52 Total: -47.12 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -26.24 -8.60 -34.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.684 kcal (2) G-P(sol) polarization free energy of solvation -26.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds