Wall clock time and date at job start Mon Mar 30 2020 04:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47002 * 2 1 4 4 C 1.46898 * 111.00055 * 293.95185 * 3 2 1 5 5 C 1.53000 * 109.47155 * 173.80048 * 4 3 2 6 6 C 1.46906 * 110.99826 * 170.00150 * 3 2 1 7 7 H 1.08992 * 109.52336 * 150.20039 * 6 3 2 8 8 C 1.53117 * 109.52143 * 270.32304 * 6 3 2 9 9 C 1.53037 * 109.28110 * 177.55967 * 8 6 3 10 10 N 1.46846 * 109.52227 * 300.82590 * 9 8 6 11 11 C 1.46898 * 110.99961 * 185.83873 * 10 9 8 12 12 C 1.46846 * 111.20238 * 61.73514 * 10 9 8 13 13 C 1.53037 * 109.52250 * 298.26346 * 12 10 9 14 14 H 1.08995 * 109.50224 * 299.23279 * 13 12 10 15 15 C 1.50698 * 109.50047 * 179.12051 * 13 12 10 16 16 H 1.08006 * 119.99744 * 246.27457 * 15 13 12 17 17 C 1.37879 * 120.00464 * 66.26829 * 15 13 12 18 18 N 1.31514 * 119.99736 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 120.00253 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46898 * 90.00219 * 19 17 15 21 21 H 1.48497 * 109.47190 * 210.00357 * 19 17 15 22 22 H 1.48497 * 109.46904 * 330.00219 * 19 17 15 23 23 H 1.09004 * 109.46883 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.46955 * 60.00406 * 1 2 3 25 25 H 1.09000 * 109.46844 * 299.99591 * 1 2 3 26 26 H 1.09001 * 109.47134 * 120.00093 * 2 1 3 27 27 H 1.09000 * 109.47079 * 239.99477 * 2 1 3 28 28 H 1.08995 * 109.47464 * 293.80445 * 4 3 2 29 29 H 1.09001 * 109.46484 * 53.80297 * 4 3 2 30 30 H 1.08997 * 109.46921 * 55.34478 * 5 4 3 31 31 H 1.08998 * 109.46926 * 175.34581 * 5 4 3 32 32 H 1.09006 * 109.47299 * 295.34995 * 5 4 3 33 33 H 1.09001 * 109.50876 * 297.50419 * 8 6 3 34 34 H 1.09001 * 109.50882 * 57.57852 * 8 6 3 35 35 H 1.09004 * 109.46045 * 60.83841 * 9 8 6 36 36 H 1.08998 * 109.46475 * 180.81195 * 9 8 6 37 37 H 1.08999 * 109.47694 * 63.94595 * 11 10 9 38 38 H 1.09003 * 109.47408 * 183.95082 * 11 10 9 39 39 H 1.09000 * 109.46948 * 303.94869 * 11 10 9 40 40 H 1.09001 * 109.45832 * 58.27766 * 12 10 9 41 41 H 1.08994 * 109.46214 * 178.24938 * 12 10 9 42 42 H 0.97000 * 120.00107 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0669 -1.2533 5 6 2.0576 3.5438 -1.1555 6 6 3.4686 1.4311 0.2381 7 1 3.8922 2.3025 -0.2611 8 6 3.7371 1.5225 1.7428 9 6 5.2476 1.5089 1.9882 10 7 5.8219 0.2715 1.4446 11 6 7.2468 0.1592 1.7835 12 6 5.6177 0.1842 -0.0070 13 6 4.1183 0.1584 -0.3119 14 1 3.6660 -0.7140 0.1596 15 6 3.9091 0.0906 -1.8027 16 1 3.4545 0.9211 -2.3226 17 6 4.2983 -1.0314 -2.5032 18 7 4.8515 -2.0427 -1.8702 19 14 4.0384 -1.1157 -4.3512 20 1 5.2340 -0.5724 -5.0444 21 1 3.8298 -2.5286 -4.7578 22 1 2.8448 -0.3130 -4.7202 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.8933 -0.5139 -0.8899 28 1 2.2079 1.6042 -2.0809 29 1 0.5971 1.9833 -1.4253 30 1 3.1144 3.6261 -0.9016 31 1 1.8749 4.0315 -2.1131 32 1 1.4595 4.0259 -0.3822 33 1 3.3135 2.4481 2.1326 34 1 3.2783 0.6719 2.2468 35 1 5.7034 2.3678 1.4956 36 1 5.4420 1.5593 3.0596 37 1 7.3581 0.0812 2.8650 38 1 7.6640 -0.7297 1.3103 39 1 7.7759 1.0429 1.4267 40 1 6.0718 1.0494 -0.4902 41 1 6.0808 -0.7273 -0.3847 42 1 5.1256 -2.8319 -2.3630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259891227.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:08 Heat of formation + Delta-G solvation = -6.110652 kcal Electronic energy + Delta-G solvation = -19295.567631 eV Core-core repulsion = 16695.914490 eV Total energy + Delta-G solvation = -2599.653141 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64945 -37.92011 -35.00755 -33.25625 -32.61048 -31.35253 -29.24792 -27.21959 -26.47259 -23.92865 -23.28386 -23.15164 -21.46658 -19.64703 -18.50648 -16.89984 -16.49992 -16.24458 -15.82473 -15.70115 -15.40615 -15.15902 -14.74377 -14.28386 -14.05830 -13.51815 -13.24774 -13.10824 -12.92749 -12.88534 -12.69589 -12.60538 -12.47293 -12.36040 -12.21560 -11.94856 -11.71435 -11.63232 -11.58532 -11.18084 -10.91095 -10.50091 -10.39983 -9.06005 -8.74412 -8.07803 -6.16642 1.36247 1.39390 1.46605 2.41243 3.12078 3.31866 3.38025 4.14429 4.20366 4.28021 4.41017 4.48896 4.54210 4.56836 4.63891 4.68066 4.76027 4.78990 4.85076 4.90336 4.94260 4.99261 5.04998 5.08762 5.12697 5.20961 5.27979 5.33506 5.33795 5.37138 5.46794 5.60544 5.78063 5.85593 5.97118 6.21959 6.40107 6.52073 6.54044 6.63121 6.95179 7.48504 8.97929 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.015156 B = 0.012951 C = 0.008596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1846.960481 B = 2161.556466 C = 3256.432776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.052 3.948 3 N -0.516 5.516 4 C 0.029 3.971 5 C -0.138 4.138 6 C 0.086 3.914 7 H 0.057 0.943 8 C -0.093 4.093 9 C 0.062 3.938 10 N -0.562 5.562 11 C 0.031 3.969 12 C 0.083 3.917 13 C 0.038 3.962 14 H 0.013 0.987 15 C -0.519 4.519 16 H 0.067 0.933 17 C 0.020 3.980 18 N -0.913 5.913 19 Si 0.936 3.064 20 H -0.280 1.280 21 H -0.289 1.289 22 H -0.267 1.267 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.051 0.949 39 H 0.022 0.978 40 H -0.009 1.009 41 H 0.056 0.944 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.067 7.673 4.909 9.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.076 4.076 3 N -0.239 5.239 4 C -0.099 4.099 5 C -0.195 4.195 6 C -0.023 4.023 7 H 0.075 0.925 8 C -0.131 4.131 9 C -0.066 4.066 10 N -0.287 5.287 11 C -0.117 4.117 12 C -0.045 4.045 13 C 0.018 3.982 14 H 0.031 0.969 15 C -0.557 4.557 16 H 0.085 0.915 17 C -0.179 4.179 18 N -0.553 5.553 19 Si 0.763 3.237 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.192 1.192 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.070 0.930 39 H 0.040 0.960 40 H 0.009 0.991 41 H 0.075 0.925 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.494 7.360 5.476 9.816 hybrid contribution 1.143 -0.424 -2.274 2.580 sum -2.351 6.936 3.202 7.993 Atomic orbital electron populations 1.21745 0.94365 1.01282 1.01921 1.21988 0.95365 0.89996 1.00281 1.62476 1.12850 1.15135 1.33417 1.22432 1.00470 0.95084 0.91864 1.21757 1.01011 0.94881 1.01848 1.21791 0.87761 0.97596 0.95134 0.92463 1.21478 0.94430 1.01593 0.95638 1.22081 0.95131 0.89526 0.99889 1.62017 1.15581 1.37015 1.14108 1.22305 0.87714 0.99861 1.01842 1.22001 1.00199 0.97816 0.84526 1.19215 0.90956 0.93830 0.94163 0.96902 1.21665 1.38932 1.01523 0.93592 0.91527 1.25612 0.95260 0.95725 1.01315 1.70069 1.42278 1.06390 1.36530 0.85884 0.78548 0.77024 0.82215 1.20656 1.21452 1.19157 0.92416 0.92788 0.91826 0.93506 0.94716 0.94584 0.90816 0.93707 0.91715 0.91625 0.90327 0.93046 0.95796 0.89311 0.89855 0.92957 0.95980 0.99064 0.92517 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.85 71.98 0.71 -3.56 16 2 C 0.05 2.07 4.18 86.30 0.36 2.43 16 3 N -0.52 -19.51 4.35 -870.54 -3.79 -23.30 16 4 C 0.03 1.03 5.28 86.30 0.46 1.49 16 5 C -0.14 -4.08 9.91 71.98 0.71 -3.37 16 6 C 0.09 3.48 1.63 44.99 0.07 3.55 16 7 H 0.06 2.39 5.54 -2.39 -0.01 2.37 16 8 C -0.09 -3.29 5.65 30.65 0.17 -3.12 16 9 C 0.06 2.10 5.46 86.33 0.47 2.57 16 10 N -0.56 -22.68 4.91 -922.60 -4.53 -27.21 16 11 C 0.03 1.04 9.62 127.69 1.23 2.26 16 12 C 0.08 3.99 4.57 86.33 0.39 4.39 16 13 C 0.04 1.86 1.11 -11.49 -0.01 1.85 16 14 H 0.01 0.72 6.15 -2.39 -0.01 0.71 16 15 C -0.52 -27.06 5.95 25.60 0.15 -26.91 16 16 H 0.07 3.43 4.66 -2.91 -0.01 3.42 16 17 C 0.02 1.08 5.33 84.66 0.45 1.53 16 18 N -0.91 -52.41 11.80 21.45 0.25 -52.16 16 19 Si 0.94 43.15 29.54 68.60 2.03 45.17 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 24 H 0.05 1.62 6.43 -2.39 -0.02 1.60 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 1.99 6.80 -2.39 -0.02 1.97 16 27 H 0.03 1.66 5.72 -2.39 -0.01 1.65 16 28 H 0.04 1.52 4.58 -2.39 -0.01 1.50 16 29 H 0.07 2.38 6.21 -2.39 -0.01 2.36 16 30 H 0.04 1.42 5.96 -2.39 -0.01 1.41 16 31 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 1.94 7.67 -2.39 -0.02 1.92 16 35 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.09 2.52 8.12 -2.39 -0.02 2.50 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 1.84 8.02 -2.39 -0.02 1.82 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H 0.06 3.12 6.50 -2.39 -0.02 3.10 16 42 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -57.96 304.41 0.11 -57.86 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.98 Total: 16.51 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: 5.17 Total: -16.87 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -8.06 Total: -102.67 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -57.96 0.11 -57.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259891227.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.745 kcal (2) G-P(sol) polarization free energy of solvation -57.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds