Wall clock time and date at job start Mon Mar 30 2020 04:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46879 * 2 1 4 4 C 1.46895 * 111.00283 * 70.86275 * 3 2 1 5 5 C 1.53004 * 109.47160 * 69.69677 * 4 3 2 6 6 C 1.46902 * 110.99751 * 194.81514 * 3 2 1 7 7 H 1.09002 * 109.50877 * 302.05811 * 6 3 2 8 8 C 1.52571 * 109.49077 * 182.00262 * 6 3 2 9 9 C 1.47088 * 114.20752 * 154.94308 * 8 6 3 10 10 C 1.54868 * 110.32613 * 62.88127 * 9 8 6 11 11 N 1.44580 * 109.59740 * 288.73390 * 10 9 8 12 12 C 1.36944 * 118.64077 * 270.70366 * 11 10 9 13 13 H 1.07998 * 120.00272 * 22.46856 * 12 11 10 14 14 C 1.38812 * 119.99813 * 202.46720 * 12 11 10 15 15 N 1.31627 * 119.99626 * 21.03664 * 14 12 11 16 16 Si 1.86796 * 120.00188 * 201.03150 * 14 12 11 17 17 H 1.48499 * 109.47051 * 94.99185 * 16 14 12 18 18 H 1.48501 * 109.47114 * 214.99565 * 16 14 12 19 19 H 1.48504 * 109.47102 * 334.99265 * 16 14 12 20 20 C 1.47605 * 122.71772 * 90.72340 * 11 10 9 21 21 C 1.51036 * 109.42763 * 62.25479 * 6 3 2 22 22 H 1.09005 * 109.46797 * 303.33410 * 1 2 3 23 23 H 1.08997 * 109.47743 * 63.33248 * 1 2 3 24 24 H 1.09002 * 109.47348 * 183.34141 * 1 2 3 25 25 H 1.09008 * 109.46571 * 240.00328 * 2 1 3 26 26 H 1.08993 * 109.47038 * 120.00538 * 2 1 3 27 27 H 1.08999 * 109.47440 * 189.70003 * 4 3 2 28 28 H 1.09000 * 109.47242 * 309.70358 * 4 3 2 29 29 H 1.08997 * 109.47607 * 303.19586 * 5 4 3 30 30 H 1.09005 * 109.46991 * 63.19183 * 5 4 3 31 31 H 1.08999 * 109.47221 * 183.19089 * 5 4 3 32 32 H 1.08995 * 108.51418 * 33.76506 * 8 6 3 33 33 H 1.08995 * 108.50794 * 276.11773 * 8 6 3 34 34 H 1.08998 * 109.33321 * 183.13964 * 9 8 6 35 35 H 1.08999 * 109.33344 * 302.61854 * 9 8 6 36 36 H 1.08995 * 109.44924 * 48.76890 * 10 9 8 37 37 H 1.08997 * 109.45442 * 168.69509 * 10 9 8 38 38 H 0.96999 * 119.99279 * 180.02562 * 15 14 12 39 39 H 1.08998 * 108.94500 * 78.55181 * 20 11 10 40 40 H 1.08998 * 108.95101 * 197.27161 * 20 11 10 41 41 H 1.09000 * 109.44361 * 91.77811 * 21 6 3 42 42 H 1.09003 * 109.30814 * 332.02217 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7712 2.0312 1.2956 5 6 2.6788 1.4086 2.3584 6 6 3.4451 1.4393 -0.3507 7 1 4.0167 0.8356 0.3543 8 6 3.9290 2.8851 -0.2919 9 6 5.3720 3.0286 -0.0459 10 6 6.1809 2.4007 -1.2077 11 7 6.0685 0.9603 -1.1539 12 6 6.9817 0.2578 -0.4136 13 1 7.5214 0.7471 0.3837 14 6 7.2134 -1.0830 -0.6879 15 7 6.9014 -1.5769 -1.8674 16 14 7.9683 -2.1864 0.6168 17 1 6.8889 -2.8895 1.3554 18 1 8.8557 -3.1847 -0.0323 19 1 8.7607 -1.3619 1.5643 20 6 5.0105 0.2155 -1.8644 21 6 3.6389 0.9052 -1.7501 22 1 -0.3633 0.5648 0.8586 23 1 -0.3634 0.4612 -0.9183 24 1 -0.3634 -1.0259 0.0599 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.9829 3.0975 1.2163 28 1 0.7285 1.8879 1.5791 29 1 2.5073 0.3329 2.3980 30 1 3.7212 1.6011 2.1041 31 1 2.4548 1.8483 3.3303 32 1 3.3895 3.3986 0.5039 33 1 3.6896 3.3689 -1.2388 34 1 5.6207 4.0867 0.0361 35 1 5.6308 2.5266 0.8864 36 1 5.7884 2.7600 -2.1589 37 1 7.2287 2.6866 -1.1166 38 1 7.0630 -2.5140 -2.0589 39 1 5.2800 0.1359 -2.9175 40 1 4.9379 -0.7864 -1.4413 41 1 3.5875 1.7281 -2.4629 42 1 2.8523 0.1843 -1.9728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260154993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:12 Heat of formation + Delta-G solvation = 28.678089 kcal Electronic energy + Delta-G solvation = -19180.497611 eV Core-core repulsion = 16582.353023 eV Total energy + Delta-G solvation = -2598.144588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.26418 -36.37413 -33.34480 -31.76131 -31.23920 -30.34840 -27.98720 -25.71400 -24.25774 -23.31863 -22.72667 -20.52821 -19.31244 -18.55135 -16.74056 -16.08929 -15.41245 -14.83358 -14.16197 -14.05104 -13.60834 -13.47710 -13.21227 -12.89858 -12.60678 -12.28461 -12.05474 -11.75227 -11.62348 -11.47271 -11.24036 -10.99467 -10.83949 -10.77947 -10.56838 -10.33367 -10.15945 -9.96735 -9.84342 -9.72335 -9.54084 -9.35136 -8.32453 -7.80516 -6.66506 -5.75383 -3.12068 3.38367 3.46520 3.47327 4.28182 4.53766 5.16129 5.22235 5.35765 5.42436 5.48122 5.52445 5.59824 5.65447 5.66300 5.74688 5.84486 6.01396 6.06664 6.12374 6.18437 6.23019 6.29686 6.33029 6.42090 6.48371 6.53081 6.63492 6.70045 6.80915 6.83545 6.89693 6.97977 7.15903 7.42568 7.59041 7.64781 7.74341 7.86885 8.48755 9.27548 9.97032 10.40843 11.32323 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.008668 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.950353 B = 3229.494501 C = 3535.116290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.039 3.961 3 N -0.537 5.537 4 C 0.047 3.953 5 C -0.193 4.193 6 C 0.096 3.904 7 H 0.060 0.940 8 C -0.101 4.101 9 C -0.144 4.144 10 C 0.158 3.842 11 N -0.591 5.591 12 C -0.254 4.254 13 H 0.066 0.934 14 C 0.002 3.998 15 N -0.901 5.901 16 Si 0.893 3.107 17 H -0.290 1.290 18 H -0.292 1.292 19 H -0.279 1.279 20 C 0.178 3.822 21 C -0.137 4.137 22 H 0.050 0.950 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.252 0.748 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.266 5.825 4.201 12.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 N -0.261 5.261 4 C -0.081 4.081 5 C -0.252 4.252 6 C -0.011 4.011 7 H 0.078 0.922 8 C -0.138 4.138 9 C -0.185 4.185 10 C 0.030 3.970 11 N -0.312 5.312 12 C -0.384 4.384 13 H 0.084 0.916 14 C -0.196 4.196 15 N -0.546 5.546 16 Si 0.724 3.276 17 H -0.217 1.217 18 H -0.219 1.219 19 H -0.205 1.205 20 C 0.053 3.947 21 C -0.176 4.176 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.099 0.901 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.041 0.959 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.503 5.921 3.735 12.622 hybrid contribution 0.831 -1.134 1.348 1.948 sum -9.672 4.787 5.083 11.929 Atomic orbital electron populations 1.21767 0.95627 1.00756 1.01942 1.22158 0.95176 0.90023 1.01469 1.62356 1.18843 1.16447 1.28478 1.22186 0.98741 0.99238 0.87982 1.22431 1.02025 1.01308 0.99405 1.21076 0.85616 0.96691 0.97729 0.92178 1.20468 0.96517 0.95776 1.01080 1.21463 0.95944 0.99030 1.02098 1.20675 0.96875 0.85193 0.94285 1.43694 1.29788 1.00113 1.57645 1.19240 1.16964 0.92896 1.09306 0.91634 1.24881 1.00081 0.98674 0.95984 1.70136 1.52092 1.13595 1.18762 0.86399 0.78590 0.80900 0.81749 1.21677 1.21878 1.20471 1.21001 0.83200 0.94942 0.95568 1.22253 1.00046 1.00128 0.95162 0.93109 0.92278 0.92909 0.90091 0.94802 0.90624 0.91501 0.92763 0.91492 0.92924 0.93118 0.93073 0.93489 0.92461 0.94981 0.93908 0.93808 0.95850 0.90856 0.93317 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 10.01 37.16 0.37 -1.37 16 2 C 0.04 0.59 5.39 -3.83 -0.02 0.57 16 3 N -0.54 -8.43 4.53 -228.11 -1.03 -9.46 16 4 C 0.05 0.64 5.42 -3.82 -0.02 0.62 16 5 C -0.19 -2.74 9.10 37.16 0.34 -2.40 16 6 C 0.10 1.74 0.93 -68.92 -0.06 1.67 16 7 H 0.06 1.28 6.00 -51.93 -0.31 0.97 16 8 C -0.10 -1.71 4.30 -29.79 -0.13 -1.84 16 9 C -0.14 -2.61 5.73 -28.58 -0.16 -2.77 16 10 C 0.16 3.33 5.66 -4.08 -0.02 3.30 16 11 N -0.59 -14.59 2.28 -172.09 -0.39 -14.98 16 12 C -0.25 -6.93 9.45 -15.06 -0.14 -7.07 16 13 H 0.07 1.78 7.91 -52.49 -0.42 1.36 16 14 C 0.00 0.06 4.75 -17.43 -0.08 -0.03 16 15 N -0.90 -26.12 11.10 55.49 0.62 -25.50 16 16 Si 0.89 21.83 29.60 -169.99 -5.03 16.80 16 17 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.18 4.27 4.71 -2.94 -0.01 4.26 16 21 C -0.14 -2.67 5.22 -27.22 -0.14 -2.81 16 22 H 0.05 0.58 6.44 -51.93 -0.33 0.25 16 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.08 1.30 5.63 -51.92 -0.29 1.01 16 26 H 0.03 0.53 6.20 -51.93 -0.32 0.21 16 27 H 0.08 1.02 6.04 -51.93 -0.31 0.70 16 28 H 0.07 0.83 6.29 -51.93 -0.33 0.50 16 29 H 0.05 0.80 6.38 -51.93 -0.33 0.47 16 30 H 0.07 1.09 6.34 -51.93 -0.33 0.76 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.05 0.79 5.19 -51.93 -0.27 0.52 16 33 H 0.05 0.87 7.35 -51.93 -0.38 0.49 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 37 H 0.04 0.91 7.99 -51.93 -0.41 0.50 16 38 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.02 0.61 8.08 -51.93 -0.42 0.19 16 40 H 0.07 1.96 6.19 -51.93 -0.32 1.64 16 41 H 0.05 0.93 7.31 -51.93 -0.38 0.55 16 42 H 0.06 1.12 5.52 -51.93 -0.29 0.83 16 LS Contribution 301.46 15.07 4.54 4.54 Total: -1.00 -28.16 301.46 -8.51 -36.67 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.12 Total: -0.21 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -0.09 Total: -7.86 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.81 Total: -49.94 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -28.16 -8.51 -36.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.346 kcal (2) G-P(sol) polarization free energy of solvation -28.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds