Wall clock time and date at job start Mon Mar 30 2020 04:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46895 * 109.46879 * 2 1 4 4 C 1.46895 * 111.00283 * 70.86275 * 3 2 1 5 5 C 1.53004 * 109.47160 * 69.69677 * 4 3 2 6 6 C 1.46902 * 110.99751 * 194.81514 * 3 2 1 7 7 H 1.09002 * 109.50877 * 302.05811 * 6 3 2 8 8 C 1.52571 * 109.49077 * 182.00262 * 6 3 2 9 9 C 1.47088 * 114.20752 * 154.94308 * 8 6 3 10 10 C 1.54868 * 110.32613 * 62.88127 * 9 8 6 11 11 N 1.44580 * 109.59740 * 288.73390 * 10 9 8 12 12 C 1.36944 * 118.64077 * 270.70366 * 11 10 9 13 13 H 1.07998 * 120.00272 * 22.46856 * 12 11 10 14 14 C 1.38812 * 119.99813 * 202.46720 * 12 11 10 15 15 N 1.31627 * 119.99626 * 21.03664 * 14 12 11 16 16 Si 1.86796 * 120.00188 * 201.03150 * 14 12 11 17 17 H 1.48499 * 109.47051 * 94.99185 * 16 14 12 18 18 H 1.48501 * 109.47114 * 214.99565 * 16 14 12 19 19 H 1.48504 * 109.47102 * 334.99265 * 16 14 12 20 20 C 1.47605 * 122.71772 * 90.72340 * 11 10 9 21 21 C 1.51036 * 109.42763 * 62.25479 * 6 3 2 22 22 H 1.09005 * 109.46797 * 303.33410 * 1 2 3 23 23 H 1.08997 * 109.47743 * 63.33248 * 1 2 3 24 24 H 1.09002 * 109.47348 * 183.34141 * 1 2 3 25 25 H 1.09008 * 109.46571 * 240.00328 * 2 1 3 26 26 H 1.08993 * 109.47038 * 120.00538 * 2 1 3 27 27 H 1.08999 * 109.47440 * 189.70003 * 4 3 2 28 28 H 1.09000 * 109.47242 * 309.70358 * 4 3 2 29 29 H 1.08997 * 109.47607 * 303.19586 * 5 4 3 30 30 H 1.09005 * 109.46991 * 63.19183 * 5 4 3 31 31 H 1.08999 * 109.47221 * 183.19089 * 5 4 3 32 32 H 1.08995 * 108.51418 * 33.76506 * 8 6 3 33 33 H 1.08995 * 108.50794 * 276.11773 * 8 6 3 34 34 H 1.08998 * 109.33321 * 183.13964 * 9 8 6 35 35 H 1.08999 * 109.33344 * 302.61854 * 9 8 6 36 36 H 1.08995 * 109.44924 * 48.76890 * 10 9 8 37 37 H 1.08997 * 109.45442 * 168.69509 * 10 9 8 38 38 H 0.96999 * 119.99279 * 180.02562 * 15 14 12 39 39 H 1.08998 * 108.94500 * 78.55181 * 20 11 10 40 40 H 1.08998 * 108.95101 * 197.27161 * 20 11 10 41 41 H 1.09000 * 109.44361 * 91.77811 * 21 6 3 42 42 H 1.09003 * 109.30814 * 332.02217 * 21 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7712 2.0312 1.2956 5 6 2.6788 1.4086 2.3584 6 6 3.4451 1.4393 -0.3507 7 1 4.0167 0.8356 0.3543 8 6 3.9290 2.8851 -0.2919 9 6 5.3720 3.0286 -0.0459 10 6 6.1809 2.4007 -1.2077 11 7 6.0685 0.9603 -1.1539 12 6 6.9817 0.2578 -0.4136 13 1 7.5214 0.7471 0.3837 14 6 7.2134 -1.0830 -0.6879 15 7 6.9014 -1.5769 -1.8674 16 14 7.9683 -2.1864 0.6168 17 1 6.8889 -2.8895 1.3554 18 1 8.8557 -3.1847 -0.0323 19 1 8.7607 -1.3619 1.5643 20 6 5.0105 0.2155 -1.8644 21 6 3.6389 0.9052 -1.7501 22 1 -0.3633 0.5648 0.8586 23 1 -0.3634 0.4612 -0.9183 24 1 -0.3634 -1.0259 0.0599 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.9829 3.0975 1.2163 28 1 0.7285 1.8879 1.5791 29 1 2.5073 0.3329 2.3980 30 1 3.7212 1.6011 2.1041 31 1 2.4548 1.8483 3.3303 32 1 3.3895 3.3986 0.5039 33 1 3.6896 3.3689 -1.2388 34 1 5.6207 4.0867 0.0361 35 1 5.6308 2.5266 0.8864 36 1 5.7884 2.7600 -2.1589 37 1 7.2287 2.6866 -1.1166 38 1 7.0630 -2.5140 -2.0589 39 1 5.2800 0.1359 -2.9175 40 1 4.9379 -0.7864 -1.4413 41 1 3.5875 1.7281 -2.4629 42 1 2.8523 0.1843 -1.9728 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260154993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:11 Heat of formation + Delta-G solvation = 12.278050 kcal Electronic energy + Delta-G solvation = -19181.208770 eV Core-core repulsion = 16582.353023 eV Total energy + Delta-G solvation = -2598.855747 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68028 -37.98760 -35.07610 -33.27589 -32.78860 -31.93957 -29.35071 -27.50166 -25.73671 -24.96413 -24.20967 -21.87061 -21.06807 -19.95203 -18.59544 -17.55927 -17.00302 -16.39526 -15.84262 -15.61268 -15.19661 -15.05868 -14.66729 -14.33230 -13.93397 -13.75303 -13.53655 -13.11727 -13.05802 -12.86273 -12.77264 -12.72920 -12.44727 -12.24740 -12.13681 -12.01540 -11.81177 -11.62076 -11.36731 -11.32389 -11.23318 -10.88475 -10.38518 -9.11879 -8.68752 -7.86969 -5.25725 1.41617 1.43902 1.52337 2.50357 3.02128 3.24805 3.69959 3.93347 3.99899 4.07646 4.33626 4.39701 4.40433 4.46753 4.51455 4.55976 4.59906 4.71120 4.76511 4.82285 4.88635 4.93643 5.07956 5.11476 5.13775 5.15994 5.24942 5.25915 5.29408 5.37725 5.43208 5.45448 5.58383 5.63654 5.68658 5.79128 6.29073 6.34513 6.38710 7.17609 7.96865 8.34814 9.18754 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022271 B = 0.008668 C = 0.007919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.950353 B = 3229.494501 C = 3535.116290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.037 3.963 3 N -0.534 5.534 4 C 0.047 3.953 5 C -0.187 4.187 6 C 0.107 3.893 7 H 0.024 0.976 8 C -0.098 4.098 9 C -0.130 4.130 10 C 0.150 3.850 11 N -0.603 5.603 12 C -0.258 4.258 13 H 0.064 0.936 14 C -0.050 4.050 15 N -0.932 5.932 16 Si 0.954 3.046 17 H -0.290 1.290 18 H -0.295 1.295 19 H -0.269 1.269 20 C 0.192 3.808 21 C -0.124 4.124 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.023 0.977 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.058 0.942 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.035 0.965 38 H 0.248 0.752 39 H -0.008 1.008 40 H 0.038 0.962 41 H 0.057 0.943 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.851 7.390 5.484 15.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.091 4.091 3 N -0.258 5.258 4 C -0.081 4.081 5 C -0.246 4.246 6 C -0.001 4.001 7 H 0.042 0.958 8 C -0.136 4.136 9 C -0.170 4.170 10 C 0.024 3.976 11 N -0.326 5.326 12 C -0.389 4.389 13 H 0.082 0.918 14 C -0.245 4.245 15 N -0.579 5.579 16 Si 0.783 3.217 17 H -0.218 1.218 18 H -0.222 1.222 19 H -0.194 1.194 20 C 0.066 3.934 21 C -0.163 4.163 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.010 0.990 40 H 0.057 0.943 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.096 7.524 5.034 15.108 hybrid contribution 1.333 -1.586 0.938 2.274 sum -10.763 5.937 5.973 13.667 Atomic orbital electron populations 1.21695 0.92957 1.01908 1.02559 1.22208 0.97295 0.89491 1.00124 1.62387 1.16650 1.16846 1.29947 1.22300 0.99826 0.99367 0.86568 1.22369 1.00559 1.00806 1.00874 1.20822 0.86962 0.96851 0.95500 0.95809 1.20431 0.95864 0.94996 1.02294 1.21290 0.96092 1.00242 0.99384 1.20882 0.97279 0.83335 0.96120 1.43889 1.29654 1.01575 1.57436 1.19497 1.16822 0.93391 1.09170 0.91816 1.25565 1.01418 0.99901 0.97597 1.70276 1.53850 1.13417 1.20367 0.85442 0.77713 0.79062 0.79510 1.21751 1.22177 1.19364 1.20711 0.85490 0.94055 0.93120 1.22059 0.97216 1.00215 0.96765 0.91888 0.92064 0.91668 0.91870 0.95853 0.89580 0.89295 0.93945 0.94013 0.90639 0.90849 0.92316 0.90352 0.94276 0.94137 0.94621 0.94328 0.99015 0.94343 0.92386 0.91383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 10.01 71.98 0.72 -2.18 16 2 C 0.04 1.06 5.39 86.30 0.47 1.52 16 3 N -0.53 -15.72 4.53 -875.60 -3.97 -19.69 16 4 C 0.05 1.14 5.42 86.31 0.47 1.61 16 5 C -0.19 -4.98 9.10 71.98 0.65 -4.32 16 6 C 0.11 3.77 0.93 44.13 0.04 3.81 16 7 H 0.02 1.03 6.00 -2.39 -0.01 1.02 16 8 C -0.10 -3.10 4.30 28.61 0.12 -2.98 16 9 C -0.13 -4.44 5.73 29.39 0.17 -4.27 16 10 C 0.15 6.27 5.66 87.38 0.49 6.77 16 11 N -0.60 -30.43 2.28 -698.36 -1.59 -32.02 16 12 C -0.26 -14.38 9.45 84.03 0.79 -13.58 16 13 H 0.06 3.50 7.91 -2.91 -0.02 3.48 16 14 C -0.05 -2.82 4.75 84.86 0.40 -2.42 16 15 N -0.93 -56.07 11.10 21.65 0.24 -55.83 16 16 Si 0.95 45.88 29.60 68.60 2.03 47.92 16 17 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 18 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 C 0.19 9.53 4.71 86.49 0.41 9.94 16 21 C -0.12 -4.82 5.22 30.28 0.16 -4.66 16 22 H 0.06 1.22 6.44 -2.38 -0.02 1.20 16 23 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.06 2.03 5.63 -2.38 -0.01 2.01 16 26 H 0.02 0.72 6.20 -2.39 -0.01 0.70 16 27 H 0.09 1.96 6.04 -2.39 -0.01 1.94 16 28 H 0.09 1.83 6.29 -2.39 -0.02 1.82 16 29 H 0.04 1.21 6.38 -2.39 -0.02 1.19 16 30 H 0.04 1.32 6.34 -2.38 -0.02 1.30 16 31 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 2.02 5.19 -2.39 -0.01 2.00 16 33 H 0.06 1.80 7.35 -2.39 -0.02 1.78 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.04 1.61 8.06 -2.39 -0.02 1.59 16 37 H 0.04 1.51 7.99 -2.39 -0.02 1.49 16 38 H 0.25 14.47 8.31 -92.71 -0.77 13.69 16 39 H -0.01 -0.45 8.08 -2.39 -0.02 -0.47 16 40 H 0.04 2.15 6.19 -2.39 -0.01 2.14 16 41 H 0.06 2.15 7.31 -2.39 -0.02 2.13 16 42 H 0.07 2.54 5.52 -2.39 -0.01 2.53 16 Total: -1.00 -61.96 301.46 2.59 -59.37 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: 0.98 Total: 11.03 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 4.90 Total: -10.78 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -5.32 Total: -107.53 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.92 kcal Total: -61.96 2.59 -59.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260154993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.647 kcal (2) G-P(sol) polarization free energy of solvation -61.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds