Wall clock time and date at job start Mon Mar 30 2020 03:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47121 * 2 1 4 4 C 1.46955 * 111.00233 * 66.04615 * 3 2 1 5 5 C 1.53049 * 109.36962 * 176.80960 * 4 3 2 6 6 N 1.46956 * 109.37889 * 58.38792 * 5 4 3 7 7 C 1.46901 * 110.99929 * 176.82469 * 6 5 4 8 8 C 1.50703 * 109.47098 * 66.04508 * 7 6 5 9 9 H 1.07997 * 120.00161 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99528 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00672 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99265 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46845 * 60.00692 * 12 10 8 14 14 H 1.48500 * 109.46584 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47349 * 300.00250 * 12 10 8 16 16 C 1.46957 * 110.88202 * 300.71439 * 6 5 4 17 17 H 1.08999 * 109.49028 * 299.30678 * 16 6 5 18 18 C 1.53006 * 109.48891 * 179.26694 * 16 6 5 19 19 C 1.52995 * 109.47090 * 180.09038 * 18 16 6 20 20 C 1.52998 * 109.46847 * 300.08719 * 18 16 6 21 21 C 1.46955 * 111.00423 * 302.24553 * 3 2 1 22 22 H 1.09006 * 109.47316 * 300.00278 * 1 2 3 23 23 H 1.09002 * 109.46684 * 59.99924 * 1 2 3 24 24 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46826 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.46684 * 120.00076 * 2 1 3 27 27 H 1.09005 * 109.49150 * 56.83886 * 4 3 2 28 28 H 1.09006 * 109.48712 * 296.78139 * 4 3 2 29 29 H 1.09002 * 109.49200 * 178.36943 * 5 4 3 30 30 H 1.09002 * 109.48985 * 298.41362 * 5 4 3 31 31 H 1.09001 * 109.47726 * 186.04947 * 7 6 5 32 32 H 1.08999 * 109.47015 * 306.04990 * 7 6 5 33 33 H 0.97001 * 119.99858 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.46972 * 60.08356 * 18 16 6 35 35 H 1.09000 * 109.47030 * 299.99560 * 19 18 16 36 36 H 1.09000 * 109.47112 * 59.99551 * 19 18 16 37 37 H 1.09002 * 109.46951 * 180.02562 * 19 18 16 38 38 H 1.09006 * 109.47528 * 60.00367 * 20 18 16 39 39 H 1.09007 * 109.47185 * 179.97438 * 20 18 16 40 40 H 1.08997 * 109.47734 * 299.99863 * 20 18 16 41 41 H 1.09002 * 109.48806 * 303.15815 * 21 3 2 42 42 H 1.09003 * 109.48675 * 63.21848 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0672 1.2538 5 6 2.2650 3.4773 1.2473 6 7 1.7509 4.2181 0.0869 7 6 2.2410 5.6029 0.0871 8 6 3.7341 5.6074 -0.1175 9 1 4.2656 4.6748 -0.2362 10 6 4.4212 6.8022 -0.1541 11 7 3.7739 7.9379 -0.0100 12 14 6.2719 6.8077 -0.4084 13 1 6.5946 6.1682 -1.7092 14 1 6.7673 8.2076 -0.4080 15 1 6.9248 6.0518 0.6904 16 6 2.1001 3.5356 -1.1669 17 1 3.1845 3.4725 -1.2567 18 6 1.5348 4.3226 -2.3510 19 6 1.8967 3.6106 -3.6560 20 6 0.0127 4.4120 -2.2240 21 6 1.5051 2.1256 -1.1603 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0727 1.5065 2.0974 28 1 0.5856 2.1304 1.3432 29 1 1.9826 3.9954 2.1638 30 1 3.3514 3.4134 1.1857 31 1 1.7621 6.1581 -0.7195 32 1 2.0037 6.0722 1.0419 33 1 4.2575 8.7784 -0.0354 34 1 1.9586 5.3268 -2.3554 35 1 2.9810 3.5469 -3.7465 36 1 1.4728 2.6064 -3.6515 37 1 1.4944 4.1715 -4.4996 38 1 -0.2452 4.9194 -1.2943 39 1 -0.3900 4.9731 -3.0673 40 1 -0.4112 3.4079 -2.2196 41 1 1.7876 1.6074 -2.0768 42 1 0.4188 2.1894 -1.0983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260295821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:13 Heat of formation + Delta-G solvation = 0.409266 kcal Electronic energy + Delta-G solvation = -19049.500432 eV Core-core repulsion = 16450.130016 eV Total energy + Delta-G solvation = -2599.370416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.35688 -36.17551 -34.18582 -32.42876 -30.27281 -29.04371 -27.04500 -26.63202 -24.87219 -23.59860 -22.52176 -21.06739 -19.73309 -18.11576 -16.11790 -15.64698 -15.24286 -14.73680 -14.44643 -14.23199 -13.92483 -13.48688 -13.29541 -12.95273 -12.50644 -12.33075 -12.05458 -11.87060 -11.72533 -11.43393 -11.32258 -10.96796 -10.87500 -10.83063 -10.52002 -10.44019 -10.39724 -10.21159 -9.79912 -9.69523 -9.64121 -9.21885 -8.36869 -7.90109 -7.07374 -5.97809 -4.06206 3.31921 3.36493 3.39843 4.29824 4.44923 5.01746 5.10459 5.23329 5.32350 5.47517 5.50665 5.55414 5.64352 5.72013 5.81865 5.84361 5.86788 5.98068 6.05879 6.11111 6.14616 6.20624 6.29195 6.37406 6.41794 6.46997 6.55356 6.71771 6.84927 6.94761 7.03431 7.13963 7.29819 7.44638 7.51145 7.60346 7.96363 8.14574 8.35700 8.38801 9.04675 9.60365 11.06822 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.008030 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.764271 B = 3486.194896 C = 3881.344101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.051 3.949 3 N -0.538 5.538 4 C 0.057 3.943 5 C 0.064 3.936 6 N -0.536 5.536 7 C 0.186 3.814 8 C -0.544 4.544 9 H 0.057 0.943 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.886 3.114 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.103 3.897 17 H 0.053 0.947 18 C -0.089 4.089 19 C -0.144 4.144 20 C -0.134 4.134 21 C 0.058 3.942 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.036 0.964 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.067 0.933 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.070 -12.068 -2.132 13.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.077 4.077 3 N -0.262 5.262 4 C -0.071 4.071 5 C -0.065 4.065 6 N -0.261 5.261 7 C 0.061 3.939 8 C -0.583 4.583 9 H 0.075 0.925 10 C -0.137 4.137 11 N -0.531 5.531 12 Si 0.714 3.286 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.007 4.007 17 H 0.071 0.929 18 C -0.108 4.108 19 C -0.201 4.201 20 C -0.191 4.191 21 C -0.070 4.070 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.085 0.915 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.045 -11.859 -2.111 13.477 hybrid contribution 1.151 0.114 -0.096 1.161 sum -4.894 -11.745 -2.208 12.914 Atomic orbital electron populations 1.22429 0.98622 1.01589 1.02343 1.22113 0.92653 0.90933 1.02048 1.62340 1.59027 1.01546 1.03277 1.22230 0.98324 0.95369 0.91186 1.21916 0.98433 0.91427 0.94737 1.62653 1.58379 1.04502 1.00542 1.19760 0.93148 0.83305 0.97712 1.21728 0.94112 0.92479 1.50026 0.92474 1.24934 0.98006 0.95632 0.95106 1.69932 1.35751 0.97412 1.50037 0.86754 0.86187 0.76887 0.78782 1.20291 1.21321 1.20350 1.21378 0.98270 0.90560 0.90446 0.92863 1.21100 0.95857 1.00809 0.93045 1.21860 1.01174 0.99721 0.97394 1.21741 0.95585 1.00354 1.01467 1.22402 0.97778 0.94514 0.92325 0.92474 0.92340 0.92726 0.91247 0.91271 0.91620 0.94593 0.91518 0.93646 0.94530 0.95580 0.92876 0.89357 0.92927 0.93391 0.93334 0.91512 0.94346 0.93938 0.91487 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.19 9.20 37.16 0.34 -1.85 16 2 C 0.05 0.64 6.10 -3.82 -0.02 0.62 16 3 N -0.54 -8.60 4.92 -234.47 -1.15 -9.75 16 4 C 0.06 0.93 5.27 -3.77 -0.02 0.91 16 5 C 0.06 1.26 5.33 -3.77 -0.02 1.24 16 6 N -0.54 -11.33 3.96 -227.92 -0.90 -12.23 16 7 C 0.19 4.70 4.61 -4.97 -0.02 4.68 16 8 C -0.54 -14.82 7.66 -34.44 -0.26 -15.08 16 9 H 0.06 1.58 5.80 -52.49 -0.30 1.27 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 12 Si 0.89 21.63 29.54 -169.99 -5.02 16.60 16 13 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 16 C 0.10 2.00 1.38 -67.66 -0.09 1.91 16 17 H 0.05 1.21 6.45 -51.93 -0.34 0.87 16 18 C -0.09 -1.63 2.28 -90.62 -0.21 -1.83 16 19 C -0.14 -2.22 8.84 37.15 0.33 -1.89 16 20 C -0.13 -2.22 8.68 37.16 0.32 -1.90 16 21 C 0.06 0.94 3.64 -3.77 -0.01 0.93 16 22 H 0.06 0.69 6.62 -51.93 -0.34 0.35 16 23 H 0.06 0.71 6.44 -51.93 -0.33 0.37 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 27 H 0.07 0.96 8.11 -51.93 -0.42 0.54 16 28 H 0.04 0.58 6.63 -51.93 -0.34 0.23 16 29 H 0.07 1.30 8.11 -51.93 -0.42 0.88 16 30 H 0.05 1.01 6.95 -51.93 -0.36 0.64 16 31 H 0.04 0.98 6.38 -51.93 -0.33 0.65 16 32 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.09 1.92 6.40 -51.93 -0.33 1.59 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.22 7.60 -51.93 -0.39 0.83 16 39 H 0.04 0.58 8.14 -51.92 -0.42 0.15 16 40 H 0.04 0.64 6.40 -51.93 -0.33 0.31 16 41 H 0.07 1.03 6.52 -51.93 -0.34 0.69 16 42 H 0.04 0.70 4.66 -51.93 -0.24 0.46 16 LS Contribution 306.23 15.07 4.61 4.61 Total: -1.00 -28.14 306.23 -8.76 -36.89 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.26 Total: -0.21 kcal Atomic # 6 Polarization: -10.76 SS G_CDS: 0.23 Total: -10.53 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.32 Total: -47.37 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.14 -8.76 -36.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.302 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds