Wall clock time and date at job start Mon Mar 30 2020 03:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46896 * 109.47121 * 2 1 4 4 C 1.46955 * 111.00233 * 66.04615 * 3 2 1 5 5 C 1.53049 * 109.36962 * 176.80960 * 4 3 2 6 6 N 1.46956 * 109.37889 * 58.38792 * 5 4 3 7 7 C 1.46901 * 110.99929 * 176.82469 * 6 5 4 8 8 C 1.50703 * 109.47098 * 66.04508 * 7 6 5 9 9 H 1.07997 * 120.00161 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99528 * 179.97438 * 8 7 6 11 11 N 1.31510 * 120.00672 * 0.02562 * 10 8 7 12 12 Si 1.86809 * 119.99265 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46845 * 60.00692 * 12 10 8 14 14 H 1.48500 * 109.46584 * 180.02562 * 12 10 8 15 15 H 1.48491 * 109.47349 * 300.00250 * 12 10 8 16 16 C 1.46957 * 110.88202 * 300.71439 * 6 5 4 17 17 H 1.08999 * 109.49028 * 299.30678 * 16 6 5 18 18 C 1.53006 * 109.48891 * 179.26694 * 16 6 5 19 19 C 1.52995 * 109.47090 * 180.09038 * 18 16 6 20 20 C 1.52998 * 109.46847 * 300.08719 * 18 16 6 21 21 C 1.46955 * 111.00423 * 302.24553 * 3 2 1 22 22 H 1.09006 * 109.47316 * 300.00278 * 1 2 3 23 23 H 1.09002 * 109.46684 * 59.99924 * 1 2 3 24 24 H 1.08997 * 109.47131 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46826 * 239.99730 * 2 1 3 26 26 H 1.09002 * 109.46684 * 120.00076 * 2 1 3 27 27 H 1.09005 * 109.49150 * 56.83886 * 4 3 2 28 28 H 1.09006 * 109.48712 * 296.78139 * 4 3 2 29 29 H 1.09002 * 109.49200 * 178.36943 * 5 4 3 30 30 H 1.09002 * 109.48985 * 298.41362 * 5 4 3 31 31 H 1.09001 * 109.47726 * 186.04947 * 7 6 5 32 32 H 1.08999 * 109.47015 * 306.04990 * 7 6 5 33 33 H 0.97001 * 119.99858 * 179.97438 * 11 10 8 34 34 H 1.08995 * 109.46972 * 60.08356 * 18 16 6 35 35 H 1.09000 * 109.47030 * 299.99560 * 19 18 16 36 36 H 1.09000 * 109.47112 * 59.99551 * 19 18 16 37 37 H 1.09002 * 109.46951 * 180.02562 * 19 18 16 38 38 H 1.09006 * 109.47528 * 60.00367 * 20 18 16 39 39 H 1.09007 * 109.47185 * 179.97438 * 20 18 16 40 40 H 1.08997 * 109.47734 * 299.99863 * 20 18 16 41 41 H 1.09002 * 109.48806 * 303.15815 * 21 3 2 42 42 H 1.09003 * 109.48675 * 63.21848 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6701 2.0672 1.2538 5 6 2.2650 3.4773 1.2473 6 7 1.7509 4.2181 0.0869 7 6 2.2410 5.6029 0.0871 8 6 3.7341 5.6074 -0.1175 9 1 4.2656 4.6748 -0.2362 10 6 4.4212 6.8022 -0.1541 11 7 3.7739 7.9379 -0.0100 12 14 6.2719 6.8077 -0.4084 13 1 6.5946 6.1682 -1.7092 14 1 6.7673 8.2076 -0.4080 15 1 6.9248 6.0518 0.6904 16 6 2.1001 3.5356 -1.1669 17 1 3.1845 3.4725 -1.2567 18 6 1.5348 4.3226 -2.3510 19 6 1.8967 3.6106 -3.6560 20 6 0.0127 4.4120 -2.2240 21 6 1.5051 2.1256 -1.1603 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 2.0727 1.5065 2.0974 28 1 0.5856 2.1304 1.3432 29 1 1.9826 3.9954 2.1638 30 1 3.3514 3.4134 1.1857 31 1 1.7621 6.1581 -0.7195 32 1 2.0037 6.0722 1.0419 33 1 4.2575 8.7784 -0.0354 34 1 1.9586 5.3268 -2.3554 35 1 2.9810 3.5469 -3.7465 36 1 1.4728 2.6064 -3.6515 37 1 1.4944 4.1715 -4.4996 38 1 -0.2452 4.9194 -1.2943 39 1 -0.3900 4.9731 -3.0673 40 1 -0.4112 3.4079 -2.2196 41 1 1.7876 1.6074 -2.0768 42 1 0.4188 2.1894 -1.0983 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260295821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:12 Heat of formation + Delta-G solvation = -18.325042 kcal Electronic energy + Delta-G solvation = -19050.312813 eV Core-core repulsion = 16450.130016 eV Total energy + Delta-G solvation = -2600.182797 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.82920 -37.55188 -35.82722 -34.42559 -31.62427 -30.44435 -28.77654 -27.96126 -26.53956 -25.04835 -24.08112 -22.65363 -21.07058 -19.80461 -18.12911 -17.10874 -16.75664 -16.38800 -15.98272 -15.68955 -15.28099 -14.93452 -14.71058 -14.38373 -14.16882 -13.71166 -13.50101 -13.25232 -13.21721 -12.83127 -12.74548 -12.65870 -12.59505 -12.18298 -12.16577 -12.05071 -11.87643 -11.70492 -11.62371 -11.41779 -11.17364 -10.83869 -10.54780 -9.15232 -8.91996 -8.12784 -6.31475 1.34870 1.35779 1.44029 2.37250 3.08576 3.11209 3.37337 3.96885 4.05915 4.18530 4.26494 4.37404 4.42945 4.43791 4.49358 4.57958 4.64171 4.68033 4.76250 4.90898 4.93825 4.98543 5.01651 5.07848 5.11425 5.16243 5.22167 5.26047 5.31870 5.37110 5.40233 5.43418 5.62884 5.64519 5.79522 6.10436 6.18002 6.21594 6.39817 6.62937 6.90156 7.39136 8.88443 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.024999 B = 0.008030 C = 0.007212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.764271 B = 3486.194896 C = 3881.344101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.051 3.949 3 N -0.556 5.556 4 C 0.069 3.931 5 C 0.062 3.938 6 N -0.531 5.531 7 C 0.204 3.796 8 C -0.548 4.548 9 H 0.049 0.951 10 C 0.014 3.986 11 N -0.925 5.925 12 Si 0.950 3.050 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.273 1.273 16 C 0.104 3.896 17 H 0.015 0.985 18 C -0.090 4.090 19 C -0.136 4.136 20 C -0.125 4.125 21 C 0.070 3.930 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.016 0.984 31 H 0.016 0.984 32 H -0.004 1.004 33 H 0.264 0.736 34 H 0.042 0.958 35 H 0.041 0.959 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -14.530 -2.887 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.076 4.076 3 N -0.280 5.280 4 C -0.059 4.059 5 C -0.067 4.067 6 N -0.255 5.255 7 C 0.077 3.923 8 C -0.587 4.587 9 H 0.067 0.933 10 C -0.185 4.185 11 N -0.565 5.565 12 Si 0.775 3.225 13 H -0.197 1.197 14 H -0.205 1.205 15 H -0.198 1.198 16 C -0.005 4.005 17 H 0.033 0.967 18 C -0.109 4.109 19 C -0.194 4.194 20 C -0.182 4.182 21 C -0.058 4.058 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.034 0.966 32 H 0.014 0.986 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.432 -14.348 -2.866 15.982 hybrid contribution 1.253 0.859 0.157 1.527 sum -5.179 -13.489 -2.710 14.701 Atomic orbital electron populations 1.22362 0.97468 1.02857 1.01690 1.22207 0.93567 0.88563 1.03282 1.62306 1.59928 1.03165 1.02623 1.22079 0.98411 0.92970 0.92405 1.21962 0.96858 0.93885 0.93949 1.62616 1.57818 1.02898 1.02145 1.19365 0.92216 0.85677 0.95021 1.21895 0.95093 0.92195 1.49487 0.93260 1.25722 1.02563 0.95285 0.94906 1.70047 1.37512 0.97955 1.51019 0.85738 0.80735 0.77177 0.78835 1.19703 1.20549 1.19841 1.21417 0.96331 0.92884 0.89834 0.96668 1.21050 0.96937 0.98572 0.94365 1.21793 1.00754 1.00878 0.95944 1.21640 0.94089 1.01604 1.00847 1.22254 0.97802 0.92268 0.93493 0.93208 0.92839 0.90548 0.90086 0.90087 0.89553 0.93870 0.92042 0.96571 0.96630 0.98622 0.92719 0.93984 0.93965 0.90901 0.91814 0.93971 0.92830 0.91674 0.89758 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.54 9.20 71.98 0.66 -2.88 16 2 C 0.05 1.11 6.10 86.30 0.53 1.63 16 3 N -0.56 -16.54 4.92 -895.72 -4.40 -20.94 16 4 C 0.07 2.15 5.27 86.31 0.45 2.61 16 5 C 0.06 2.52 5.33 86.31 0.46 2.98 16 6 N -0.53 -23.17 3.96 -875.01 -3.47 -26.64 16 7 C 0.20 10.89 4.61 85.56 0.39 11.29 16 8 C -0.55 -31.12 7.66 25.60 0.20 -30.92 16 9 H 0.05 2.84 5.80 -2.91 -0.02 2.82 16 10 C 0.01 0.83 5.46 84.66 0.46 1.29 16 11 N -0.93 -55.92 13.29 21.45 0.28 -55.63 16 12 Si 0.95 45.22 29.54 68.60 2.03 47.24 16 13 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 15 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 16 C 0.10 4.10 1.38 44.92 0.06 4.16 16 17 H 0.02 0.72 6.45 -2.39 -0.02 0.70 16 18 C -0.09 -3.31 2.28 -10.79 -0.02 -3.33 16 19 C -0.14 -3.98 8.84 71.98 0.64 -3.35 16 20 C -0.12 -4.00 8.68 71.98 0.63 -3.38 16 21 C 0.07 2.14 3.64 86.31 0.31 2.45 16 22 H 0.05 1.03 6.62 -2.38 -0.02 1.02 16 23 H 0.05 1.08 6.44 -2.39 -0.02 1.07 16 24 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 27 H 0.09 2.34 8.11 -2.38 -0.02 2.32 16 28 H 0.04 1.30 6.63 -2.38 -0.02 1.28 16 29 H 0.06 2.48 8.11 -2.39 -0.02 2.47 16 30 H 0.02 0.74 6.95 -2.39 -0.02 0.72 16 31 H 0.02 0.90 6.38 -2.39 -0.02 0.88 16 32 H 0.00 -0.26 8.10 -2.39 -0.02 -0.28 16 33 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 34 H 0.04 1.92 6.40 -2.39 -0.02 1.91 16 35 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 36 H 0.07 1.77 6.47 -2.39 -0.02 1.75 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.55 7.60 -2.38 -0.02 1.53 16 39 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 40 H 0.06 1.79 6.40 -2.39 -0.02 1.77 16 41 H 0.08 2.32 6.52 -2.39 -0.02 2.30 16 42 H 0.05 1.51 4.66 -2.39 -0.01 1.49 16 Total: -1.00 -62.97 306.23 0.18 -62.79 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.97 Total: 10.62 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.77 Total: -17.44 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -7.59 Total: -103.21 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -62.97 0.18 -62.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260295821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.464 kcal (2) G-P(sol) polarization free energy of solvation -62.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds