Wall clock time and date at job start Mon Mar 30 2020 04:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47535 * 2 1 4 4 C 1.46905 * 111.00291 * 297.49208 * 3 2 1 5 5 C 1.52998 * 109.46846 * 297.97082 * 4 3 2 6 6 C 1.46896 * 110.99677 * 61.44092 * 3 2 1 7 7 H 1.09001 * 109.50658 * 300.07986 * 6 3 2 8 8 C 1.53122 * 109.50554 * 60.20039 * 6 3 2 9 9 C 1.53117 * 109.16660 * 177.59469 * 8 6 3 10 10 C 1.53038 * 109.27480 * 302.34587 * 9 8 6 11 11 N 1.46841 * 109.52736 * 59.17992 * 10 9 8 12 12 C 1.46900 * 111.00297 * 174.15973 * 11 10 9 13 13 C 1.50692 * 109.47130 * 294.20884 * 12 11 10 14 14 H 1.08001 * 120.00140 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00055 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99768 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 119.99933 * 359.97438 * 15 13 12 18 18 H 1.48495 * 109.47240 * 269.99567 * 17 15 13 19 19 H 1.48505 * 109.46941 * 150.00151 * 17 15 13 20 20 H 1.48497 * 109.47042 * 30.00156 * 17 15 13 21 21 C 1.46856 * 111.19613 * 298.25737 * 11 10 9 22 22 H 1.08993 * 109.47422 * 179.69127 * 1 2 3 23 23 H 1.09002 * 109.47128 * 299.69664 * 1 2 3 24 24 H 1.09005 * 109.46999 * 59.68923 * 1 2 3 25 25 H 1.08999 * 109.46973 * 240.00245 * 2 1 3 26 26 H 1.08993 * 109.47038 * 120.00521 * 2 1 3 27 27 H 1.09006 * 109.47100 * 57.96563 * 4 3 2 28 28 H 1.08995 * 109.47268 * 177.96980 * 4 3 2 29 29 H 1.09003 * 109.47116 * 66.09591 * 5 4 3 30 30 H 1.08997 * 109.47197 * 186.09246 * 5 4 3 31 31 H 1.09000 * 109.47061 * 306.09420 * 5 4 3 32 32 H 1.09000 * 109.52143 * 297.49989 * 8 6 3 33 33 H 1.09008 * 109.52079 * 57.62142 * 8 6 3 34 34 H 1.08994 * 109.50357 * 62.28190 * 9 8 6 35 35 H 1.08994 * 109.50334 * 182.36388 * 9 8 6 36 36 H 1.09004 * 109.46405 * 299.15898 * 10 9 8 37 37 H 1.09001 * 109.45834 * 179.19358 * 10 9 8 38 38 H 1.09007 * 109.47109 * 174.20896 * 12 11 10 39 39 H 1.08995 * 109.47269 * 54.20978 * 12 11 10 40 40 H 0.97003 * 119.99944 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46130 * 181.75542 * 21 11 10 42 42 H 1.08993 * 109.46133 * 301.72473 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.5984 2.0924 -1.2166 5 6 2.2016 1.4030 -2.4421 6 6 1.5771 2.0998 1.2046 7 1 0.4878 2.1134 1.2400 8 6 2.1211 1.3914 2.4483 9 6 1.7058 2.1761 3.6958 10 6 2.2301 3.6099 3.5885 11 7 1.6807 4.2445 2.3837 12 6 2.0513 5.6646 2.3210 13 6 1.3926 6.4062 3.4554 14 1 0.7621 5.8756 4.1535 15 6 1.5957 7.7619 3.6029 16 7 1.0205 8.4092 4.5927 17 14 2.6880 8.6793 2.3968 18 1 4.0887 8.6676 2.8897 19 1 2.2187 10.0828 2.2727 20 1 2.6248 8.0170 1.0692 21 6 2.1052 3.5357 1.1695 22 1 -0.3634 -1.0276 -0.0055 23 1 -0.3633 0.5091 0.8927 24 1 -0.3633 0.5187 -0.8872 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 0.5109 2.0753 -1.2886 28 1 1.9436 3.1254 -1.1742 29 1 1.7732 0.4061 -2.5457 30 1 1.9793 1.9884 -3.3343 31 1 3.2817 1.3235 -2.3194 32 1 1.7130 0.3820 2.5004 33 1 3.2087 1.3421 2.3930 34 1 0.6186 2.1910 3.7711 35 1 2.1256 1.6999 4.5818 36 1 3.3183 3.5951 3.5271 37 1 1.9239 4.1753 4.4686 38 1 1.7201 6.0850 1.3713 39 1 3.1338 5.7616 2.4034 40 1 1.1631 9.3631 4.6963 41 1 1.7082 4.0474 0.2928 42 1 3.1939 3.5212 1.1194 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260612578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:10 Heat of formation + Delta-G solvation = 4.474899 kcal Electronic energy + Delta-G solvation = -18409.413656 eV Core-core repulsion = 15810.219538 eV Total energy + Delta-G solvation = -2599.194117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.48646 -36.94343 -33.39959 -32.05357 -31.17628 -30.63159 -27.83607 -27.07134 -24.51158 -22.93755 -22.54797 -20.89936 -19.81029 -18.90183 -16.78587 -16.34340 -15.65397 -14.80153 -14.56943 -14.25430 -14.08936 -13.81567 -13.21821 -13.17281 -12.86591 -12.63632 -12.51614 -12.20491 -12.11984 -11.66142 -11.55601 -11.45851 -11.23561 -10.96050 -10.72597 -10.66213 -10.48578 -10.27099 -10.06324 -9.79980 -9.60716 -9.21976 -8.56264 -8.16457 -7.33058 -6.04021 -4.01056 3.29360 3.36863 3.39413 3.90931 4.43348 4.81115 4.90492 5.00320 5.17171 5.19563 5.27611 5.28737 5.33177 5.40962 5.46544 5.51498 5.60933 5.68220 5.73586 5.90586 5.94048 5.96682 6.05198 6.11571 6.15411 6.20183 6.24284 6.29282 6.32234 6.44380 6.71088 6.73202 6.90741 7.02337 7.19029 7.24253 7.63346 7.95227 8.11916 8.68293 9.04543 9.58033 11.09098 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030262 B = 0.006139 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.035512 B = 4560.278468 C = 5154.086034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 N -0.534 5.534 4 C 0.040 3.960 5 C -0.147 4.147 6 C 0.087 3.913 7 H 0.053 0.947 8 C -0.109 4.109 9 C -0.116 4.116 10 C 0.063 3.937 11 N -0.527 5.527 12 C 0.164 3.836 13 C -0.508 4.508 14 H 0.081 0.919 15 C 0.068 3.932 16 N -0.901 5.901 17 Si 0.875 3.125 18 H -0.278 1.278 19 H -0.286 1.286 20 H -0.267 1.267 21 C 0.060 3.940 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.020 0.980 37 H 0.089 0.911 38 H 0.027 0.973 39 H -0.017 1.017 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.934 -16.088 -9.855 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.081 4.081 3 N -0.258 5.258 4 C -0.087 4.087 5 C -0.205 4.205 6 C -0.021 4.021 7 H 0.071 0.929 8 C -0.147 4.147 9 C -0.154 4.154 10 C -0.066 4.066 11 N -0.252 5.252 12 C 0.038 3.962 13 C -0.546 4.546 14 H 0.099 0.901 15 C -0.133 4.133 16 N -0.540 5.540 17 Si 0.702 3.298 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.069 4.069 22 H 0.075 0.925 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.055 0.945 28 H 0.097 0.903 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.107 0.893 38 H 0.045 0.955 39 H 0.001 0.999 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 1.928 -15.928 -9.750 18.775 hybrid contribution 0.522 0.733 -0.680 1.128 sum 2.450 -15.195 -10.430 18.592 Atomic orbital electron populations 1.22424 0.98481 1.01937 1.02421 1.22187 0.92807 0.90682 1.02471 1.62295 1.59537 1.01992 1.01959 1.22184 0.97978 0.98849 0.89729 1.21798 1.01756 1.00159 0.96761 1.21642 0.98097 0.93411 0.88983 0.92924 1.21629 1.00988 0.98049 0.94015 1.21607 1.01628 0.95695 0.96512 1.21990 0.95665 0.93670 0.95232 1.61821 1.59533 1.03636 1.00202 1.20147 0.93663 0.84080 0.98336 1.21041 1.29511 0.92941 1.11137 0.90100 1.24894 0.95691 0.97447 0.95294 1.69895 1.44162 1.09116 1.30826 0.86866 0.81152 0.79364 0.82388 1.20343 1.21163 1.19221 1.22088 0.97556 0.92784 0.94424 0.92479 0.92035 0.92519 0.90871 0.90626 0.94548 0.90257 0.93035 0.92549 0.91924 0.92511 0.91800 0.91489 0.91999 0.96206 0.89315 0.95496 0.99891 0.92691 0.91556 0.95237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.00 9.23 37.16 0.34 -1.66 16 2 C 0.05 0.50 5.45 -3.82 -0.02 0.48 16 3 N -0.53 -6.91 4.61 -226.55 -1.04 -7.96 16 4 C 0.04 0.49 5.09 -3.82 -0.02 0.47 16 5 C -0.15 -1.46 9.56 37.16 0.36 -1.11 16 6 C 0.09 1.30 1.75 -67.63 -0.12 1.18 16 7 H 0.05 0.85 6.34 -51.93 -0.33 0.52 16 8 C -0.11 -1.53 4.98 -26.61 -0.13 -1.67 16 9 C -0.12 -1.81 6.09 -26.65 -0.16 -1.97 16 10 C 0.06 1.22 5.29 -3.84 -0.02 1.20 16 11 N -0.53 -11.27 4.65 -236.11 -1.10 -12.37 16 12 C 0.16 4.06 3.79 -4.98 -0.02 4.04 16 13 C -0.51 -14.54 8.98 -34.44 -0.31 -14.85 16 14 H 0.08 2.51 7.36 -52.49 -0.39 2.12 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -27.71 13.96 55.43 0.77 -26.94 16 17 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 C 0.06 1.09 4.37 -3.83 -0.02 1.07 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.72 6.45 -51.93 -0.33 0.38 16 24 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 25 H 0.07 0.71 6.36 -51.93 -0.33 0.38 16 26 H 0.08 0.80 6.29 -51.93 -0.33 0.47 16 27 H 0.04 0.45 6.26 -51.93 -0.32 0.12 16 28 H 0.08 1.05 5.92 -51.93 -0.31 0.75 16 29 H 0.05 0.47 6.72 -51.93 -0.35 0.12 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.70 6.52 -51.93 -0.34 0.36 16 33 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 1.94 6.70 -51.93 -0.35 1.59 16 38 H 0.03 0.68 7.05 -51.93 -0.37 0.31 16 39 H -0.02 -0.41 7.55 -51.93 -0.39 -0.81 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.07 1.19 6.14 -51.93 -0.32 0.87 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 307.00 15.07 4.63 4.63 Total: -1.00 -29.84 307.00 -8.96 -38.80 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.33 Total: -2.31 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.22 Total: -10.92 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.37 Total: -47.26 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.84 -8.96 -38.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260612578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.272 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds