Wall clock time and date at job start Mon Mar 30 2020 03:30:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.53004 * 109.47096 * 119.99679 * 2 1 3 5 5 C 1.53001 * 109.46947 * 65.00212 * 4 2 1 6 6 H 1.09008 * 109.50569 * 304.94577 * 5 4 2 7 7 C 1.53049 * 109.48846 * 184.89150 * 5 4 2 8 8 N 1.46955 * 109.36348 * 181.62924 * 7 5 4 9 9 C 1.46906 * 111.00028 * 183.18399 * 8 7 5 10 10 H 1.08993 * 109.47083 * 300.00718 * 9 8 7 11 11 C 1.52998 * 109.46632 * 60.00202 * 9 8 7 12 12 C 1.50698 * 109.47003 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00122 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99803 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99800 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99974 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46977 * 119.99733 * 16 14 12 19 19 H 1.48493 * 109.47172 * 239.99756 * 16 14 12 20 20 C 1.46961 * 110.88185 * 59.32326 * 8 7 5 21 21 C 1.53059 * 109.35852 * 300.67791 * 20 8 7 22 22 N 1.46955 * 109.48917 * 64.99740 * 5 4 2 23 23 H 1.09001 * 109.47340 * 60.00099 * 1 2 3 24 24 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46958 * 300.00270 * 1 2 3 26 26 H 1.09001 * 109.46958 * 239.99730 * 2 1 3 27 27 H 1.08997 * 109.46711 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46939 * 300.00146 * 3 2 1 29 29 H 1.09000 * 109.46997 * 59.99714 * 3 2 1 30 30 H 1.08999 * 109.47044 * 305.00425 * 4 2 1 31 31 H 1.09000 * 109.47074 * 184.99883 * 4 2 1 32 32 H 1.08994 * 109.48827 * 301.59538 * 7 5 4 33 33 H 1.09002 * 109.49104 * 61.66134 * 7 5 4 34 34 H 1.09006 * 109.47291 * 60.00519 * 11 9 8 35 35 H 1.09001 * 109.47408 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47361 * 299.99979 * 11 9 8 37 37 H 0.96998 * 119.99910 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.48914 * 60.64040 * 20 8 7 39 39 H 1.08999 * 109.49217 * 180.69148 * 20 8 7 40 40 H 1.09003 * 109.48841 * 298.43162 * 21 20 8 41 41 H 1.08998 * 109.48261 * 178.36981 * 21 20 8 42 42 H 1.00901 * 111.00068 * 303.15328 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5562 -2.2713 1.0537 7 6 2.0378 -2.8900 2.4911 8 7 1.6831 -4.3140 2.4139 9 6 1.9853 -5.0011 3.6768 10 1 3.0509 -4.9173 3.8899 11 6 1.1861 -4.3572 4.8114 12 6 1.6086 -6.4555 3.5600 13 1 1.1872 -6.8320 2.6396 14 6 1.8019 -7.3056 4.6282 15 7 2.3155 -6.8473 5.7488 16 14 1.3356 -9.1087 4.4832 17 1 0.7830 -9.3698 3.1298 18 1 2.5401 -9.9502 4.6974 19 1 0.3123 -9.4392 5.5073 20 6 2.3645 -4.9631 1.2852 21 6 1.9620 -4.2685 -0.0179 22 7 2.3167 -2.8444 0.0593 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 3.1130 -2.7906 2.6391 33 1 1.5112 -2.4289 3.3267 34 1 0.1204 -4.4410 4.5983 35 1 1.4099 -4.8672 5.7484 36 1 1.4581 -3.3051 4.8961 37 1 2.4518 -7.4454 6.5001 38 1 3.4435 -4.8872 1.4195 39 1 2.0765 -6.0135 1.2417 40 1 0.8866 -4.3679 -0.1659 41 1 2.4886 -4.7296 -0.8534 42 1 2.1091 -2.3726 -0.8081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261018621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:34 Heat of formation + Delta-G solvation = -10.089586 kcal Electronic energy + Delta-G solvation = -18319.381971 eV Core-core repulsion = 15719.556290 eV Total energy + Delta-G solvation = -2599.825681 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.92776 -36.43785 -34.34458 -32.19808 -31.02959 -28.88711 -27.23138 -26.52166 -25.21678 -24.16749 -21.75597 -20.39985 -19.31911 -18.98160 -16.33765 -16.22942 -15.38034 -14.75458 -14.34929 -14.17959 -13.83939 -13.64189 -13.31043 -13.04154 -12.90215 -12.29175 -12.12204 -11.79305 -11.64416 -11.62262 -11.10310 -10.99837 -10.88599 -10.68746 -10.62220 -10.40108 -10.33356 -10.32509 -10.05815 -9.93173 -9.50275 -8.80145 -8.40342 -8.08791 -7.10518 -5.99167 -4.03582 3.30597 3.38372 3.42587 4.41871 4.50562 4.74072 4.90736 4.93243 5.11720 5.32992 5.44914 5.54853 5.57504 5.58186 5.69331 5.77100 5.83973 5.90817 5.94157 5.99930 6.07288 6.12040 6.19140 6.29563 6.36460 6.37847 6.59630 6.73239 6.78512 6.89458 7.08781 7.15800 7.40273 7.55078 7.69557 7.78082 7.85622 8.25382 8.36613 8.64841 9.03284 9.61415 11.07729 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.005386 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.440976 B = 5196.971678 C = 5516.387431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.108 4.108 5 C 0.090 3.910 6 H 0.045 0.955 7 C 0.060 3.940 8 N -0.535 5.535 9 C 0.212 3.788 10 H -0.003 1.003 11 C -0.132 4.132 12 C -0.502 4.502 13 H 0.063 0.937 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.066 3.934 21 C 0.059 3.941 22 N -0.686 5.686 23 H 0.049 0.951 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.084 0.916 36 H 0.008 0.992 37 H 0.259 0.741 38 H 0.026 0.974 39 H 0.087 0.913 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.330 0.670 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.414 11.873 -10.345 15.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.202 4.202 4 C -0.146 4.146 5 C -0.020 4.020 6 H 0.063 0.937 7 C -0.069 4.069 8 N -0.261 5.261 9 C 0.106 3.894 10 H 0.015 0.985 11 C -0.190 4.190 12 C -0.541 4.541 13 H 0.081 0.919 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.724 3.276 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.063 4.063 21 C -0.070 4.070 22 N -0.319 5.319 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.027 0.973 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.105 0.895 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.291 11.641 -9.872 15.318 hybrid contribution -0.259 -0.886 -0.147 0.935 sum -1.550 10.755 -10.019 14.780 Atomic orbital electron populations 1.21918 0.95538 1.01911 1.01380 1.21118 0.95580 0.96021 0.98853 1.21821 1.00950 0.96101 1.01366 1.21680 1.01509 0.94100 0.97331 1.21600 0.96109 0.92525 0.91768 0.93687 1.22127 0.98165 0.91051 0.95568 1.62273 1.57527 1.00380 1.05873 1.19224 0.93678 0.92756 0.83716 0.98490 1.21830 0.98985 0.95880 1.02287 1.21189 1.41134 0.92523 0.99226 0.91903 1.24937 0.95270 0.98753 0.95300 1.69906 1.44939 1.35031 1.03372 0.86476 0.78039 0.85007 0.78097 1.19770 1.21149 1.21064 1.21992 0.95993 0.98963 0.89309 1.22062 0.98270 0.88169 0.98498 1.60611 1.61869 1.03123 1.06248 0.93166 0.92462 0.92684 0.91270 0.92720 0.93096 0.92821 0.91629 0.91284 0.95540 0.90907 0.94798 0.89695 0.97349 0.93076 0.95541 0.89517 0.94987 0.91408 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.96 37.16 0.33 -1.20 16 2 C -0.10 -1.01 2.80 -90.61 -0.25 -1.26 16 3 C -0.14 -1.32 9.19 37.16 0.34 -0.98 16 4 C -0.11 -1.36 4.36 -26.73 -0.12 -1.48 16 5 C 0.09 1.39 2.52 -67.66 -0.17 1.22 16 6 H 0.05 0.73 6.35 -51.92 -0.33 0.40 16 7 C 0.06 1.15 4.60 -3.77 -0.02 1.14 16 8 N -0.54 -11.91 4.57 -227.88 -1.04 -12.95 16 9 C 0.21 5.50 2.06 -68.86 -0.14 5.35 16 10 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 11 C -0.13 -3.29 8.74 37.16 0.32 -2.96 16 12 C -0.50 -13.89 7.89 -34.44 -0.27 -14.16 16 13 H 0.06 1.73 6.41 -52.49 -0.34 1.40 16 14 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 15 N -0.89 -25.72 11.32 55.43 0.63 -25.10 16 16 Si 0.90 21.44 29.54 -169.99 -5.02 16.42 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C 0.07 1.36 5.33 -3.76 -0.02 1.34 16 21 C 0.06 0.98 6.72 -3.76 -0.03 0.95 16 22 N -0.69 -10.35 6.54 -106.58 -0.70 -11.04 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.64 6.46 -51.93 -0.34 0.31 16 25 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.72 6.49 -51.93 -0.34 0.38 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 1.40 6.14 -51.93 -0.32 1.08 16 34 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 36 H 0.01 0.17 6.34 -51.93 -0.33 -0.16 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.89 6.14 -51.93 -0.32 1.57 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.33 4.20 7.00 -39.29 -0.28 3.93 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -28.56 313.30 -9.05 -37.61 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -7.53 Total: 0.86 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -0.11 Total: -10.52 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: -1.11 Total: -49.09 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.56 -9.05 -37.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.521 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds