Wall clock time and date at job start Mon Mar 30 2020 03:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 C 1.53004 * 109.47096 * 119.99679 * 2 1 3 5 5 C 1.53001 * 109.46947 * 65.00212 * 4 2 1 6 6 H 1.09008 * 109.50569 * 304.94577 * 5 4 2 7 7 C 1.53049 * 109.48846 * 184.89150 * 5 4 2 8 8 N 1.46955 * 109.36348 * 181.62924 * 7 5 4 9 9 C 1.46906 * 111.00028 * 183.18399 * 8 7 5 10 10 H 1.08993 * 109.47083 * 300.00718 * 9 8 7 11 11 C 1.52998 * 109.46632 * 60.00202 * 9 8 7 12 12 C 1.50698 * 109.47003 * 179.97438 * 9 8 7 13 13 H 1.07999 * 120.00122 * 0.02562 * 12 9 8 14 14 C 1.37885 * 119.99803 * 180.02562 * 12 9 8 15 15 N 1.31513 * 119.99800 * 359.97438 * 14 12 9 16 16 Si 1.86798 * 119.99974 * 180.02562 * 14 12 9 17 17 H 1.48501 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46977 * 119.99733 * 16 14 12 19 19 H 1.48493 * 109.47172 * 239.99756 * 16 14 12 20 20 C 1.46961 * 110.88185 * 59.32326 * 8 7 5 21 21 C 1.53059 * 109.35852 * 300.67791 * 20 8 7 22 22 N 1.46955 * 109.48917 * 64.99740 * 5 4 2 23 23 H 1.09001 * 109.47340 * 60.00099 * 1 2 3 24 24 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46958 * 300.00270 * 1 2 3 26 26 H 1.09001 * 109.46958 * 239.99730 * 2 1 3 27 27 H 1.08997 * 109.46711 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.46939 * 300.00146 * 3 2 1 29 29 H 1.09000 * 109.46997 * 59.99714 * 3 2 1 30 30 H 1.08999 * 109.47044 * 305.00425 * 4 2 1 31 31 H 1.09000 * 109.47074 * 184.99883 * 4 2 1 32 32 H 1.08994 * 109.48827 * 301.59538 * 7 5 4 33 33 H 1.09002 * 109.49104 * 61.66134 * 7 5 4 34 34 H 1.09006 * 109.47291 * 60.00519 * 11 9 8 35 35 H 1.09001 * 109.47408 * 179.97438 * 11 9 8 36 36 H 1.09000 * 109.47361 * 299.99979 * 11 9 8 37 37 H 0.96998 * 119.99910 * 180.02562 * 15 14 12 38 38 H 1.08992 * 109.48914 * 60.64040 * 20 8 7 39 39 H 1.08999 * 109.49217 * 180.69148 * 20 8 7 40 40 H 1.09003 * 109.48841 * 298.43162 * 21 20 8 41 41 H 1.08998 * 109.48261 * 178.36981 * 21 20 8 42 42 H 1.00901 * 111.00068 * 303.15328 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 1 0.5562 -2.2713 1.0537 7 6 2.0378 -2.8900 2.4911 8 7 1.6831 -4.3140 2.4139 9 6 1.9853 -5.0011 3.6768 10 1 3.0509 -4.9173 3.8899 11 6 1.1861 -4.3572 4.8114 12 6 1.6086 -6.4555 3.5600 13 1 1.1872 -6.8320 2.6396 14 6 1.8019 -7.3056 4.6282 15 7 2.3155 -6.8473 5.7488 16 14 1.3356 -9.1087 4.4832 17 1 0.7830 -9.3698 3.1298 18 1 2.5401 -9.9502 4.6974 19 1 0.3123 -9.4392 5.5073 20 6 2.3645 -4.9631 1.2852 21 6 1.9620 -4.2685 -0.0179 22 7 2.3167 -2.8444 0.0593 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 3.1263 -0.6443 1.2952 32 1 3.1130 -2.7906 2.6391 33 1 1.5112 -2.4289 3.3267 34 1 0.1204 -4.4410 4.5983 35 1 1.4099 -4.8672 5.7484 36 1 1.4581 -3.3051 4.8961 37 1 2.4518 -7.4454 6.5001 38 1 3.4435 -4.8872 1.4195 39 1 2.0765 -6.0135 1.2417 40 1 0.8866 -4.3679 -0.1659 41 1 2.4886 -4.7296 -0.8534 42 1 2.1091 -2.3726 -0.8081 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261018621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:33 Heat of formation + Delta-G solvation = -29.099044 kcal Electronic energy + Delta-G solvation = -18320.206283 eV Core-core repulsion = 15719.556290 eV Total energy + Delta-G solvation = -2600.649993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.36675 -37.75485 -35.87422 -34.10315 -32.34982 -30.79244 -28.01654 -27.95845 -27.02856 -25.81895 -23.14882 -22.01788 -20.69893 -20.33951 -18.37110 -17.76164 -16.62114 -16.43590 -15.69268 -15.57682 -15.41310 -15.00954 -14.82414 -14.59173 -13.99733 -13.69809 -13.64031 -13.06942 -12.95122 -12.91753 -12.65061 -12.54458 -12.39203 -12.27813 -12.23720 -12.10522 -11.89167 -11.66642 -11.45617 -11.42083 -11.02411 -10.81483 -10.52562 -9.37289 -8.95707 -8.12762 -6.25099 1.40697 1.42056 1.54209 2.41255 3.14514 3.26548 3.30920 3.85963 4.00780 4.07186 4.24317 4.28411 4.42673 4.46830 4.50034 4.67921 4.68305 4.80609 4.83620 4.84523 4.93430 4.94865 4.99794 5.04857 5.08272 5.15464 5.16490 5.22913 5.27151 5.38741 5.47953 5.52547 5.55668 5.70153 5.75862 6.07128 6.23812 6.35519 6.59983 6.73121 6.89641 7.44254 8.93816 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.043641 B = 0.005386 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.440976 B = 5196.971678 C = 5516.387431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.101 4.101 5 C 0.100 3.900 6 H 0.044 0.956 7 C 0.059 3.941 8 N -0.540 5.540 9 C 0.216 3.784 10 H -0.045 1.045 11 C -0.119 4.119 12 C -0.519 4.519 13 H 0.060 0.940 14 C 0.010 3.990 15 N -0.922 5.922 16 Si 0.963 3.037 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.279 1.279 20 C 0.066 3.934 21 C 0.070 3.930 22 N -0.686 5.686 23 H 0.064 0.936 24 H 0.044 0.956 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.032 0.968 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.262 0.738 38 H 0.007 0.993 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.094 0.906 42 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.166 12.615 -12.108 17.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.139 4.139 5 C -0.010 4.010 6 H 0.061 0.939 7 C -0.070 4.070 8 N -0.264 5.264 9 C 0.109 3.891 10 H -0.027 1.027 11 C -0.177 4.177 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.188 4.188 15 N -0.561 5.561 16 Si 0.788 3.212 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.205 1.205 20 C -0.063 4.063 21 C -0.059 4.059 22 N -0.321 5.321 23 H 0.083 0.917 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.092 0.908 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.028 0.972 33 H 0.089 0.911 34 H 0.051 0.949 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.025 0.975 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.112 0.888 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.046 12.407 -11.664 17.151 hybrid contribution 0.013 -1.081 0.413 1.157 sum -2.033 11.326 -11.251 16.093 Atomic orbital electron populations 1.21901 0.95195 1.01333 1.02155 1.21077 0.95766 0.96655 0.97506 1.21794 1.00978 0.95118 1.02111 1.21628 1.01210 0.92190 0.98918 1.21490 0.95907 0.93797 0.89848 0.93858 1.22222 0.97083 0.89557 0.98101 1.62258 1.57680 1.01791 1.04712 1.19041 0.91184 0.93014 0.85884 1.02716 1.21637 0.98562 0.96763 1.00755 1.21432 1.41326 0.93669 0.99257 0.92216 1.25753 0.95090 1.03103 0.94897 1.70035 1.45570 1.36543 1.03994 0.85431 0.77806 0.79616 0.78332 1.19029 1.20688 1.20505 1.22003 0.94676 0.98709 0.90905 1.21929 0.98630 0.88762 0.96595 1.60531 1.61812 1.02568 1.07153 0.91656 0.93659 0.92727 0.90826 0.92704 0.91772 0.92706 0.91399 0.91843 0.97224 0.91129 0.94922 0.92096 0.95299 0.92915 0.97452 0.91246 0.94777 0.88782 0.82908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.96 71.98 0.64 -1.99 16 2 C -0.09 -1.66 2.80 -10.79 -0.03 -1.69 16 3 C -0.14 -2.20 9.19 71.98 0.66 -1.54 16 4 C -0.10 -2.38 4.36 30.60 0.13 -2.24 16 5 C 0.10 2.95 2.52 44.92 0.11 3.07 16 6 H 0.04 1.34 6.35 -2.38 -0.02 1.32 16 7 C 0.06 2.28 4.60 86.31 0.40 2.68 16 8 N -0.54 -24.41 4.57 -874.87 -4.00 -28.41 16 9 C 0.22 11.55 2.06 44.17 0.09 11.64 16 10 H -0.04 -2.71 8.14 -2.39 -0.02 -2.73 16 11 C -0.12 -6.08 8.74 71.98 0.63 -5.45 16 12 C -0.52 -29.30 7.89 25.60 0.20 -29.10 16 13 H 0.06 3.34 6.41 -2.91 -0.02 3.32 16 14 C 0.01 0.57 5.30 84.66 0.45 1.01 16 15 N -0.92 -54.21 11.32 21.45 0.24 -53.97 16 16 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.07 2.73 5.33 86.31 0.46 3.19 16 21 C 0.07 2.19 6.72 86.31 0.58 2.77 16 22 N -0.69 -19.34 6.54 -491.11 -3.21 -22.55 16 23 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 24 H 0.04 0.91 6.46 -2.39 -0.02 0.90 16 25 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 1.29 6.49 -2.39 -0.02 1.27 16 27 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.07 2.72 6.14 -2.39 -0.01 2.70 16 34 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 36 H 0.03 1.30 6.34 -2.39 -0.02 1.28 16 37 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 38 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 39 H 0.07 3.08 6.14 -2.39 -0.01 3.07 16 40 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.35 7.83 7.00 -89.69 -0.63 7.20 16 Total: -1.00 -62.19 313.30 -0.27 -62.46 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.35 Total: 13.82 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 4.33 Total: -17.65 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -6.97 Total: -104.93 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -62.19 -0.27 -62.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261018621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.358 kcal (2) G-P(sol) polarization free energy of solvation -62.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds