Wall clock time and date at job start Mon Mar 30 2020 03:30:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46849 * 2 1 4 4 C 1.53005 * 109.46762 * 119.99593 * 2 1 3 5 5 H 1.09006 * 109.48336 * 180.67423 * 4 2 1 6 6 C 1.53048 * 109.49089 * 300.71964 * 4 2 1 7 7 N 1.46954 * 109.36463 * 178.37022 * 6 4 2 8 8 C 1.46900 * 111.00245 * 176.80757 * 7 6 4 9 9 H 1.08998 * 109.47498 * 300.00341 * 8 7 6 10 10 C 1.53008 * 109.46346 * 60.00267 * 8 7 6 11 11 C 1.50699 * 109.47334 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99649 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99919 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99985 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99915 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46700 * 59.99983 * 15 13 11 17 17 H 1.48495 * 109.46908 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46940 * 300.00492 * 15 13 11 19 19 C 1.46954 * 110.87983 * 300.68294 * 7 6 4 20 20 C 1.53048 * 109.36751 * 59.31876 * 19 7 6 21 21 N 1.46954 * 109.48897 * 60.61553 * 4 2 1 22 22 C 1.46901 * 111.00122 * 56.83732 * 21 4 2 23 23 H 1.09001 * 109.47201 * 67.62687 * 1 2 3 24 24 H 1.09002 * 109.47371 * 187.62384 * 1 2 3 25 25 H 1.09003 * 109.47690 * 307.62713 * 1 2 3 26 26 H 1.09000 * 109.47146 * 239.99430 * 2 1 3 27 27 H 1.09005 * 109.46868 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47407 * 299.99772 * 3 2 1 29 29 H 1.09000 * 109.47712 * 59.99777 * 3 2 1 30 30 H 1.08999 * 109.48987 * 58.40002 * 6 4 2 31 31 H 1.09001 * 109.50748 * 298.34930 * 6 4 2 32 32 H 1.09004 * 109.46471 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46973 * 299.99619 * 10 8 7 34 34 H 1.08998 * 109.47262 * 59.99929 * 10 8 7 35 35 H 0.97006 * 119.99600 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.48908 * 179.29067 * 19 7 6 37 37 H 1.09001 * 109.48551 * 299.34883 * 19 7 6 38 38 H 1.08999 * 109.49019 * 181.63482 * 20 19 7 39 39 H 1.09000 * 109.50583 * 61.57520 * 20 19 7 40 40 H 1.09003 * 109.46898 * 53.19028 * 22 21 4 41 41 H 1.09001 * 109.46763 * 173.18383 * 22 21 4 42 42 H 1.08996 * 109.47339 * 293.18523 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1299 -0.7109 1.2557 6 6 1.5152 -0.0105 2.4991 7 7 1.9743 -0.7280 3.6966 8 6 1.5537 -0.0329 4.9205 9 1 1.9766 0.9716 4.9314 10 6 0.0267 0.0561 4.9572 11 6 2.0410 -0.7967 6.1247 12 1 2.6069 -1.7073 5.9939 13 6 1.7644 -0.3331 7.3934 14 7 1.0748 0.7754 7.5525 15 14 2.3690 -1.2796 8.8862 16 1 3.8510 -1.3654 8.8508 17 1 1.9426 -0.5775 10.1233 18 1 1.7934 -2.6483 8.8709 19 6 1.4968 -2.1178 3.6897 20 6 2.0215 -2.8285 2.4399 21 7 1.5624 -2.1110 1.2424 22 6 1.9830 -2.8061 0.0185 23 1 -0.3634 0.3912 -0.9503 24 1 -0.3634 -1.0186 0.1363 25 1 -0.3634 0.6274 0.8139 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.4255 0.0035 2.4790 31 1 1.8916 1.0122 2.5214 32 1 -0.2854 0.5715 5.8656 33 1 -0.3260 0.6083 4.0862 34 1 -0.3962 -0.9485 4.9463 35 1 0.8799 1.1014 8.4452 36 1 1.8601 -2.6316 4.5797 37 1 0.4069 -2.1278 3.6831 38 1 1.6447 -3.8511 2.4178 39 1 3.1112 -2.8428 2.4598 40 1 3.0615 -2.7058 -0.1038 41 1 1.7224 -3.8619 0.0925 42 1 1.4774 -2.3663 -0.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:41 Heat of formation + Delta-G solvation = 6.846222 kcal Electronic energy + Delta-G solvation = -18906.080883 eV Core-core repulsion = 16306.989594 eV Total energy + Delta-G solvation = -2599.091289 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43204 -36.10901 -34.45336 -32.56900 -29.53704 -29.08075 -26.97033 -26.43747 -25.28831 -23.62763 -23.12735 -21.09077 -19.33265 -18.27908 -16.11791 -15.68230 -15.15059 -14.79807 -14.55017 -14.27458 -13.86634 -13.38182 -13.10837 -12.89460 -12.61910 -12.37381 -12.17610 -11.76548 -11.65814 -11.58443 -11.14544 -10.96423 -10.82464 -10.76706 -10.70080 -10.59953 -10.26287 -10.17637 -10.07935 -9.84652 -9.44564 -8.79201 -8.36356 -7.99635 -7.04419 -5.98653 -4.02732 3.33577 3.37872 3.40632 4.21222 4.42869 4.92882 5.01071 5.22968 5.29732 5.33943 5.41810 5.56386 5.67025 5.71421 5.73093 5.83189 5.94855 5.99092 6.00727 6.06887 6.10456 6.15348 6.25878 6.37233 6.44650 6.56041 6.64965 6.72552 6.75575 6.89662 6.94040 7.19329 7.38108 7.40258 7.61151 7.78246 7.86132 8.16213 8.44355 8.65796 9.03004 9.62329 11.08342 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.006760 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.450855 B = 4140.744186 C = 4598.233342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.088 4.088 3 C -0.148 4.148 4 C 0.093 3.907 5 H 0.042 0.958 6 C 0.059 3.941 7 N -0.535 5.535 8 C 0.213 3.787 9 H 0.038 0.962 10 C -0.170 4.170 11 C -0.503 4.503 12 H 0.062 0.938 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.895 3.105 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.278 1.278 19 C 0.065 3.935 20 C 0.057 3.943 21 N -0.537 5.537 22 C 0.024 3.976 23 H 0.041 0.959 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.009 0.991 34 H 0.028 0.972 35 H 0.260 0.740 36 H 0.086 0.914 37 H 0.033 0.967 38 H 0.068 0.932 39 H 0.035 0.965 40 H 0.020 0.980 41 H 0.061 0.939 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.114 -3.101 -13.781 14.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.108 4.108 3 C -0.206 4.206 4 C -0.015 4.015 5 H 0.060 0.940 6 C -0.070 4.070 7 N -0.260 5.260 8 C 0.106 3.894 9 H 0.056 0.944 10 C -0.229 4.229 11 C -0.541 4.541 12 H 0.080 0.920 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.723 3.277 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.064 4.064 20 C -0.071 4.071 21 N -0.262 5.262 22 C -0.124 4.124 23 H 0.060 0.940 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.028 0.972 34 H 0.047 0.953 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.051 0.949 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.054 -2.982 -13.608 13.931 hybrid contribution 0.299 -0.468 0.858 1.022 sum 0.352 -3.450 -12.750 13.213 Atomic orbital electron populations 1.21783 0.94734 1.02798 1.00449 1.21147 0.96751 0.95731 0.97144 1.21887 1.00811 0.96046 1.01873 1.21728 0.96922 0.87822 0.95045 0.93977 1.22178 0.98258 0.96980 0.89538 1.62480 1.59146 1.01629 1.02702 1.19250 0.90260 0.94444 0.85401 0.94405 1.22373 1.00609 0.99195 1.00726 1.21114 1.33774 1.09380 0.89874 0.92025 1.24920 0.95246 0.95115 0.98899 1.69882 1.39614 1.21394 1.22402 0.86605 0.79211 0.79881 0.81965 1.20277 1.21391 1.20368 1.22013 0.97601 0.90782 0.96008 1.22272 0.97892 0.96806 0.90157 1.62147 1.59828 1.02177 1.02011 1.22363 0.97875 0.98774 0.93421 0.93971 0.91439 0.92625 0.91697 0.92914 0.92964 0.91960 0.94091 0.91378 0.89521 0.97220 0.95288 0.92980 0.89548 0.94888 0.91376 0.94711 0.96127 0.92036 0.91575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.54 37.16 0.32 -1.50 16 2 C -0.09 -1.15 2.30 -90.62 -0.21 -1.36 16 3 C -0.15 -1.80 8.85 37.16 0.33 -1.47 16 4 C 0.09 1.48 1.76 -67.66 -0.12 1.36 16 5 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 6 C 0.06 1.11 3.70 -3.77 -0.01 1.10 16 7 N -0.54 -11.73 4.73 -227.88 -1.08 -12.80 16 8 C 0.21 5.40 2.43 -68.86 -0.17 5.23 16 9 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 10 C -0.17 -4.18 8.27 37.16 0.31 -3.87 16 11 C -0.50 -13.76 7.89 -34.44 -0.27 -14.03 16 12 H 0.06 1.68 6.41 -52.48 -0.34 1.34 16 13 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 14 N -0.89 -25.55 11.32 55.43 0.63 -24.92 16 15 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 16 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.06 1.30 4.93 -3.77 -0.02 1.29 16 20 C 0.06 0.95 5.61 -3.77 -0.02 0.92 16 21 N -0.54 -8.29 3.92 -234.73 -0.92 -9.21 16 22 C 0.02 0.30 8.97 60.07 0.54 0.84 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.94 7.40 -51.93 -0.38 0.55 16 25 H 0.05 0.78 6.81 -51.93 -0.35 0.43 16 26 H 0.06 0.78 6.48 -51.93 -0.34 0.44 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.82 6.48 -51.93 -0.34 0.48 16 30 H 0.04 0.81 4.85 -51.93 -0.25 0.56 16 31 H 0.07 1.29 6.54 -51.93 -0.34 0.95 16 32 H 0.09 2.34 6.07 -51.93 -0.31 2.03 16 33 H 0.01 0.20 6.48 -51.93 -0.34 -0.13 16 34 H 0.03 0.70 6.56 -51.93 -0.34 0.36 16 35 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.09 1.87 6.14 -51.93 -0.32 1.55 16 37 H 0.03 0.70 6.57 -51.93 -0.34 0.36 16 38 H 0.07 1.01 8.06 -51.93 -0.42 0.59 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.02 0.25 8.11 -51.93 -0.42 -0.17 16 41 H 0.06 0.69 8.01 -51.93 -0.42 0.28 16 42 H 0.07 0.74 6.64 -51.93 -0.35 0.40 16 LS Contribution 304.15 15.07 4.58 4.58 Total: -1.00 -27.96 304.15 -8.49 -36.45 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.26 Total: -0.49 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 0.58 Total: -9.96 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -1.37 Total: -46.94 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.96 -8.49 -36.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.297 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds