Wall clock time and date at job start Mon Mar 30 2020 03:30:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46849 * 2 1 4 4 C 1.53005 * 109.46762 * 119.99593 * 2 1 3 5 5 H 1.09006 * 109.48336 * 180.67423 * 4 2 1 6 6 C 1.53048 * 109.49089 * 300.71964 * 4 2 1 7 7 N 1.46954 * 109.36463 * 178.37022 * 6 4 2 8 8 C 1.46900 * 111.00245 * 176.80757 * 7 6 4 9 9 H 1.08998 * 109.47498 * 300.00341 * 8 7 6 10 10 C 1.53008 * 109.46346 * 60.00267 * 8 7 6 11 11 C 1.50699 * 109.47334 * 179.97438 * 8 7 6 12 12 H 1.08005 * 119.99649 * 0.02562 * 11 8 7 13 13 C 1.37872 * 119.99919 * 180.02562 * 11 8 7 14 14 N 1.31512 * 119.99985 * 0.02562 * 13 11 8 15 15 Si 1.86809 * 119.99915 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46700 * 59.99983 * 15 13 11 17 17 H 1.48495 * 109.46908 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.46940 * 300.00492 * 15 13 11 19 19 C 1.46954 * 110.87983 * 300.68294 * 7 6 4 20 20 C 1.53048 * 109.36751 * 59.31876 * 19 7 6 21 21 N 1.46954 * 109.48897 * 60.61553 * 4 2 1 22 22 C 1.46901 * 111.00122 * 56.83732 * 21 4 2 23 23 H 1.09001 * 109.47201 * 67.62687 * 1 2 3 24 24 H 1.09002 * 109.47371 * 187.62384 * 1 2 3 25 25 H 1.09003 * 109.47690 * 307.62713 * 1 2 3 26 26 H 1.09000 * 109.47146 * 239.99430 * 2 1 3 27 27 H 1.09005 * 109.46868 * 179.97438 * 3 2 1 28 28 H 1.09002 * 109.47407 * 299.99772 * 3 2 1 29 29 H 1.09000 * 109.47712 * 59.99777 * 3 2 1 30 30 H 1.08999 * 109.48987 * 58.40002 * 6 4 2 31 31 H 1.09001 * 109.50748 * 298.34930 * 6 4 2 32 32 H 1.09004 * 109.46471 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46973 * 299.99619 * 10 8 7 34 34 H 1.08998 * 109.47262 * 59.99929 * 10 8 7 35 35 H 0.97006 * 119.99600 * 179.97438 * 14 13 11 36 36 H 1.09005 * 109.48908 * 179.29067 * 19 7 6 37 37 H 1.09001 * 109.48551 * 299.34883 * 19 7 6 38 38 H 1.08999 * 109.49019 * 181.63482 * 20 19 7 39 39 H 1.09000 * 109.50583 * 61.57520 * 20 19 7 40 40 H 1.09003 * 109.46898 * 53.19028 * 22 21 4 41 41 H 1.09001 * 109.46763 * 173.18383 * 22 21 4 42 42 H 1.08996 * 109.47339 * 293.18523 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 3.1299 -0.7109 1.2557 6 6 1.5152 -0.0105 2.4991 7 7 1.9743 -0.7280 3.6966 8 6 1.5537 -0.0329 4.9205 9 1 1.9766 0.9716 4.9314 10 6 0.0267 0.0561 4.9572 11 6 2.0410 -0.7967 6.1247 12 1 2.6069 -1.7073 5.9939 13 6 1.7644 -0.3331 7.3934 14 7 1.0748 0.7754 7.5525 15 14 2.3690 -1.2796 8.8862 16 1 3.8510 -1.3654 8.8508 17 1 1.9426 -0.5775 10.1233 18 1 1.7934 -2.6483 8.8709 19 6 1.4968 -2.1178 3.6897 20 6 2.0215 -2.8285 2.4399 21 7 1.5624 -2.1110 1.2424 22 6 1.9830 -2.8061 0.0185 23 1 -0.3634 0.3912 -0.9503 24 1 -0.3634 -1.0186 0.1363 25 1 -0.3634 0.6274 0.8139 26 1 1.8933 -0.5139 -0.8899 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 0.4255 0.0035 2.4790 31 1 1.8916 1.0122 2.5214 32 1 -0.2854 0.5715 5.8656 33 1 -0.3260 0.6083 4.0862 34 1 -0.3962 -0.9485 4.9463 35 1 0.8799 1.1014 8.4452 36 1 1.8601 -2.6316 4.5797 37 1 0.4069 -2.1278 3.6831 38 1 1.6447 -3.8511 2.4178 39 1 3.1112 -2.8428 2.4598 40 1 3.0615 -2.7058 -0.1038 41 1 1.7224 -3.8619 0.0925 42 1 1.4774 -2.3663 -0.8411 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:40 Heat of formation + Delta-G solvation = -11.211325 kcal Electronic energy + Delta-G solvation = -18906.863917 eV Core-core repulsion = 16306.989594 eV Total energy + Delta-G solvation = -2599.874323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83533 -37.74033 -35.66867 -34.53857 -31.25733 -30.54097 -28.05865 -27.83597 -27.32960 -25.01733 -24.58956 -22.62635 -20.97529 -19.61655 -18.16283 -17.23145 -16.60370 -16.21759 -16.08858 -15.53329 -15.52267 -14.89407 -14.60960 -14.38949 -14.00778 -13.77702 -13.47839 -13.24104 -12.98476 -12.93590 -12.75372 -12.63534 -12.48025 -12.39555 -12.30976 -12.00569 -11.83720 -11.78163 -11.51956 -11.42638 -11.01263 -10.75732 -10.49541 -9.22870 -8.82190 -8.11064 -6.22565 1.42428 1.44089 1.51634 2.42568 3.00541 3.17958 3.36941 3.84700 4.01291 4.13055 4.31778 4.37276 4.41934 4.47557 4.53549 4.67309 4.68265 4.75581 4.80949 4.83806 4.87242 4.90450 5.01535 5.04944 5.06826 5.12892 5.14690 5.18569 5.26375 5.29100 5.49172 5.54906 5.57830 5.70752 5.78695 6.11529 6.19766 6.22586 6.50205 6.76931 6.91432 7.46831 8.95207 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034161 B = 0.006760 C = 0.006088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.450855 B = 4140.744186 C = 4598.233342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.082 4.082 3 C -0.147 4.147 4 C 0.100 3.900 5 H 0.031 0.969 6 C 0.063 3.937 7 N -0.545 5.545 8 C 0.218 3.782 9 H 0.002 0.998 10 C -0.152 4.152 11 C -0.519 4.519 12 H 0.059 0.941 13 C 0.012 3.988 14 N -0.921 5.921 15 Si 0.960 3.040 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.069 3.931 20 C 0.066 3.934 21 N -0.544 5.544 22 C 0.025 3.975 23 H 0.064 0.936 24 H 0.058 0.942 25 H 0.036 0.964 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.023 0.977 34 H 0.026 0.974 35 H 0.261 0.739 36 H 0.067 0.933 37 H 0.020 0.980 38 H 0.092 0.908 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.075 0.925 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -4.315 -15.482 16.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.009 4.009 5 H 0.049 0.951 6 C -0.066 4.066 7 N -0.269 5.269 8 C 0.110 3.890 9 H 0.020 0.980 10 C -0.211 4.211 11 C -0.557 4.557 12 H 0.077 0.923 13 C -0.187 4.187 14 N -0.561 5.561 15 Si 0.785 3.215 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.060 4.060 20 C -0.062 4.062 21 N -0.269 5.269 22 C -0.122 4.122 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.085 0.915 37 H 0.038 0.962 38 H 0.110 0.890 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.094 0.906 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.317 -4.207 -15.335 15.905 hybrid contribution 0.210 -0.066 1.342 1.360 sum 0.527 -4.273 -13.994 14.641 Atomic orbital electron populations 1.21730 0.94560 1.02009 1.00983 1.21137 0.96748 0.96004 0.96199 1.21876 1.00976 0.95539 1.02100 1.21651 0.96114 0.88390 0.94695 0.95100 1.22195 0.97672 0.96910 0.89786 1.62392 1.59544 1.02547 1.02453 1.18997 0.90256 0.92843 0.86872 0.97963 1.22143 1.00236 0.98772 0.99998 1.21385 1.33924 1.09476 0.90955 0.92326 1.25710 0.95335 0.95958 1.01690 1.70015 1.40419 1.22644 1.22992 0.85588 0.78741 0.78765 0.78395 1.19814 1.20975 1.19535 1.21959 0.96720 0.89858 0.97444 1.22147 0.97455 0.97507 0.89111 1.62141 1.59998 1.01991 1.02777 1.22443 0.98298 0.99407 0.92091 0.91677 0.92251 0.94450 0.89553 0.92692 0.90798 0.93679 0.94985 0.92150 0.92047 0.95820 0.95471 0.92953 0.91467 0.96191 0.88990 0.95168 0.95737 0.90582 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.54 71.98 0.62 -2.60 16 2 C -0.08 -1.93 2.30 -10.79 -0.02 -1.95 16 3 C -0.15 -3.29 8.85 71.98 0.64 -2.66 16 4 C 0.10 3.05 1.76 44.92 0.08 3.13 16 5 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 6 C 0.06 2.38 3.70 86.31 0.32 2.70 16 7 N -0.55 -24.39 4.73 -874.87 -4.14 -28.53 16 8 C 0.22 11.44 2.43 44.17 0.11 11.55 16 9 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 10 C -0.15 -7.72 8.27 71.98 0.60 -7.12 16 11 C -0.52 -29.09 7.89 25.60 0.20 -28.88 16 12 H 0.06 3.25 6.41 -2.91 -0.02 3.23 16 13 C 0.01 0.65 5.30 84.65 0.45 1.10 16 14 N -0.92 -53.84 11.32 21.45 0.24 -53.59 16 15 Si 0.96 44.15 29.54 68.60 2.03 46.18 16 16 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 19 C 0.07 2.79 4.93 86.31 0.43 3.21 16 20 C 0.07 2.10 5.61 86.31 0.48 2.59 16 21 N -0.54 -15.67 3.92 -896.55 -3.51 -19.18 16 22 C 0.03 0.53 8.97 127.69 1.15 1.68 16 23 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.06 1.51 7.40 -2.39 -0.02 1.49 16 25 H 0.04 1.01 6.81 -2.39 -0.02 0.99 16 26 H 0.09 1.73 6.48 -2.39 -0.02 1.71 16 27 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.16 6.48 -2.39 -0.02 1.14 16 30 H 0.03 1.28 4.85 -2.39 -0.01 1.26 16 31 H 0.06 2.35 6.54 -2.39 -0.02 2.33 16 32 H 0.06 3.43 6.07 -2.38 -0.01 3.41 16 33 H 0.02 1.08 6.48 -2.39 -0.02 1.07 16 34 H 0.03 1.33 6.56 -2.39 -0.02 1.32 16 35 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 36 H 0.07 2.95 6.14 -2.38 -0.01 2.94 16 37 H 0.02 0.85 6.57 -2.39 -0.02 0.84 16 38 H 0.09 2.50 8.06 -2.39 -0.02 2.48 16 39 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.02 0.51 8.11 -2.39 -0.02 0.49 16 41 H 0.08 1.42 8.01 -2.39 -0.02 1.40 16 42 H 0.08 1.51 6.64 -2.39 -0.02 1.49 16 Total: -1.00 -60.81 304.15 0.63 -60.19 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.97 Total: 12.20 kcal Atomic # 6 Polarization: -22.30 SS G_CDS: 5.03 Total: -17.26 kcal Atomic # 7 Polarization: -93.90 SS G_CDS: -7.41 Total: -101.31 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -60.81 0.63 -60.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.978 kcal (2) G-P(sol) polarization free energy of solvation -60.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds