Wall clock time and date at job start Mon Mar 30 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 C 1.52992 * 109.47079 * 120.00209 * 2 1 3 5 5 H 1.09004 * 109.49027 * 59.98288 * 4 2 1 6 6 C 1.53044 * 109.49071 * 299.91377 * 4 2 1 7 7 N 1.46958 * 109.36539 * 181.63351 * 6 4 2 8 8 C 1.46901 * 110.99728 * 183.19036 * 7 6 4 9 9 H 1.08999 * 109.47911 * 62.24624 * 8 7 6 10 10 C 1.53001 * 109.46846 * 182.24686 * 8 7 6 11 11 C 1.50700 * 109.47440 * 302.24198 * 8 7 6 12 12 H 1.08004 * 119.99655 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00477 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99972 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99986 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46754 * 90.00268 * 15 13 11 17 17 H 1.48505 * 109.46827 * 209.99672 * 15 13 11 18 18 H 1.48496 * 109.47002 * 329.99859 * 15 13 11 19 19 C 1.46952 * 110.88149 * 59.32331 * 7 6 4 20 20 C 1.53055 * 109.36084 * 300.67539 * 19 7 6 21 21 N 1.46955 * 109.48920 * 180.02562 * 4 2 1 22 22 C 1.46901 * 111.00408 * 303.15636 * 21 4 2 23 23 H 1.08996 * 109.47402 * 186.61701 * 1 2 3 24 24 H 1.08995 * 109.47225 * 306.62013 * 1 2 3 25 25 H 1.08998 * 109.47524 * 66.61756 * 1 2 3 26 26 H 1.09005 * 109.46578 * 240.00218 * 2 1 3 27 27 H 1.08991 * 109.46910 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46931 * 300.00577 * 3 2 1 29 29 H 1.08995 * 109.46977 * 60.00059 * 3 2 1 30 30 H 1.09002 * 109.48991 * 301.60244 * 6 4 2 31 31 H 1.09001 * 109.49032 * 61.64492 * 6 4 2 32 32 H 1.08996 * 109.47165 * 59.99790 * 10 8 7 33 33 H 1.09002 * 109.47302 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47194 * 299.99313 * 10 8 7 35 35 H 0.96999 * 120.00162 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.48757 * 180.71606 * 19 7 6 37 37 H 1.08997 * 109.49257 * 60.64501 * 19 7 6 38 38 H 1.09005 * 109.48799 * 178.36784 * 20 19 7 39 39 H 1.09002 * 109.49322 * 298.43413 * 20 19 7 40 40 H 1.08999 * 109.47176 * 303.09594 * 22 21 4 41 41 H 1.09001 * 109.46929 * 63.09190 * 22 21 4 42 42 H 1.08999 * 109.47423 * 183.08824 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6765 -1.7489 1.2496 6 6 1.5318 0.0011 2.4991 7 7 2.0552 -0.6707 3.6967 8 6 1.5280 -0.0517 4.9202 9 1 0.4438 -0.1607 4.9446 10 6 2.1373 -0.7401 6.1433 11 6 1.8863 1.4120 4.9373 12 1 2.4490 1.8397 4.1206 13 6 1.4958 2.2051 5.9953 14 7 0.8111 1.6841 6.9900 15 14 1.9393 4.0196 6.0160 16 1 0.8620 4.7999 5.3559 17 1 2.0914 4.4759 7.4209 18 1 3.2170 4.2251 5.2876 19 6 3.5247 -0.6704 3.6974 20 6 4.0329 -1.3929 2.4475 21 7 3.5095 -0.7210 1.2499 22 6 4.0368 -1.3399 0.0264 23 1 -0.3634 -1.0208 0.1184 24 1 -0.3633 0.6130 0.8248 25 1 -0.3634 0.4078 -0.9432 26 1 1.8932 -0.5138 -0.8901 27 1 3.1299 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.8726 1.0363 2.4846 31 1 0.4422 -0.0229 2.5152 32 1 3.2215 -0.6311 6.1190 33 1 1.7465 -0.2805 7.0512 34 1 1.8782 -1.7987 6.1311 35 1 0.5367 2.2420 7.7345 36 1 3.8881 -1.1843 4.5874 37 1 3.8882 0.3572 3.6966 38 1 5.1226 -1.3686 2.4311 39 1 3.6921 -2.4281 2.4619 40 1 3.6434 -2.3521 -0.0673 41 1 3.7331 -0.7505 -0.8388 42 1 5.1250 -1.3762 0.0774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261024166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:42 Heat of formation + Delta-G solvation = 5.654307 kcal Electronic energy + Delta-G solvation = -19046.292578 eV Core-core repulsion = 16447.149604 eV Total energy + Delta-G solvation = -2599.142974 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.33781 -36.04091 -34.37917 -32.49150 -29.55467 -29.16609 -26.88761 -26.45014 -25.16807 -23.55886 -22.93216 -21.01093 -19.16594 -18.36507 -16.29159 -15.62890 -15.09933 -14.73864 -14.55338 -14.26569 -13.57238 -13.31274 -13.21228 -12.95188 -12.47820 -12.29978 -12.02572 -11.77420 -11.60281 -11.39494 -11.10784 -10.95568 -10.81084 -10.67912 -10.56705 -10.42956 -10.28187 -10.16040 -9.91429 -9.70364 -9.37215 -9.13727 -8.35654 -7.93877 -7.05759 -5.94977 -4.07616 3.29229 3.36380 3.40298 4.26518 4.43252 4.99684 5.09525 5.30146 5.30462 5.36640 5.47634 5.60953 5.72588 5.77130 5.82067 5.92447 5.98543 6.04005 6.06655 6.13478 6.20642 6.28683 6.36726 6.42567 6.54063 6.68477 6.72199 6.87334 6.94089 7.01676 7.05865 7.19778 7.44811 7.48876 7.63837 7.75608 8.02418 8.19923 8.40014 8.48062 9.02659 9.59916 11.04761 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.008253 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.931672 B = 3391.728624 C = 3818.585560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.091 3.909 5 H 0.039 0.961 6 C 0.070 3.930 7 N -0.541 5.541 8 C 0.207 3.793 9 H 0.038 0.962 10 C -0.134 4.134 11 C -0.538 4.538 12 H 0.058 0.942 13 C 0.067 3.933 14 N -0.888 5.888 15 Si 0.886 3.114 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.061 3.939 20 C 0.059 3.941 21 N -0.535 5.535 22 C 0.024 3.976 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.013 0.987 35 H 0.260 0.740 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.067 0.933 39 H 0.031 0.969 40 H 0.018 0.982 41 H 0.066 0.934 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.153 -4.515 -11.788 13.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.107 4.107 3 C -0.198 4.198 4 C -0.017 4.017 5 H 0.057 0.943 6 C -0.058 4.058 7 N -0.266 5.266 8 C 0.101 3.899 9 H 0.056 0.944 10 C -0.192 4.192 11 C -0.577 4.577 12 H 0.076 0.924 13 C -0.135 4.135 14 N -0.527 5.527 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.068 4.068 20 C -0.069 4.069 21 N -0.260 5.260 22 C -0.125 4.125 23 H 0.070 0.930 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.085 0.915 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.067 -4.474 -11.584 12.791 hybrid contribution 0.249 1.027 0.099 1.062 sum 3.317 -3.446 -11.485 12.441 Atomic orbital electron populations 1.21868 0.95230 1.01737 1.01694 1.21133 0.95396 0.97169 0.96974 1.21787 1.01835 0.95141 1.01039 1.21796 0.86549 0.97788 0.95577 0.94347 1.22024 0.98664 0.97025 0.88107 1.62668 1.06084 1.54178 1.03652 1.19241 0.95128 0.91133 0.84373 0.94447 1.21852 0.98674 0.96448 1.02204 1.21728 1.35469 0.94839 1.05640 0.92411 1.24906 0.94892 0.98192 0.95507 1.69881 1.38041 1.35457 1.09343 0.86690 0.78875 0.85873 0.77154 1.20738 1.21266 1.19991 1.21993 0.90161 0.99432 0.95224 1.22237 0.98424 0.95869 0.90416 1.62123 1.08028 1.53998 1.01811 1.22370 0.99785 0.96726 0.93581 0.92977 0.91813 0.93118 0.91910 0.91852 0.94078 0.91985 0.92821 0.91522 0.95318 0.89758 0.96769 0.92987 0.90901 0.93728 0.91495 0.95048 0.96307 0.91496 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.64 37.16 0.32 -1.60 16 2 C -0.09 -1.22 2.28 -90.62 -0.21 -1.42 16 3 C -0.14 -2.02 8.68 37.16 0.32 -1.70 16 4 C 0.09 1.51 1.78 -67.66 -0.12 1.39 16 5 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 6 C 0.07 1.40 3.79 -3.77 -0.01 1.39 16 7 N -0.54 -11.78 4.75 -227.88 -1.08 -12.87 16 8 C 0.21 5.22 2.47 -68.86 -0.17 5.05 16 9 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 10 C -0.13 -3.26 8.54 37.16 0.32 -2.94 16 11 C -0.54 -14.47 7.13 -34.44 -0.25 -14.72 16 12 H 0.06 1.59 5.80 -52.48 -0.30 1.28 16 13 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 14 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 15 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.06 1.22 4.89 -3.77 -0.02 1.20 16 20 C 0.06 0.97 5.62 -3.76 -0.02 0.95 16 21 N -0.53 -8.55 4.02 -234.73 -0.94 -9.49 16 22 C 0.02 0.30 9.05 60.07 0.54 0.85 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.91 6.84 -51.93 -0.36 0.55 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.80 6.43 -51.93 -0.33 0.46 16 27 H 0.06 0.95 7.60 -51.93 -0.39 0.55 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.01 6.39 -51.93 -0.33 0.68 16 30 H 0.05 1.18 4.66 -51.93 -0.24 0.94 16 31 H 0.07 1.35 6.68 -51.93 -0.35 1.00 16 32 H 0.03 0.66 6.26 -51.93 -0.32 0.34 16 33 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 34 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 36 H 0.07 1.46 6.03 -51.93 -0.31 1.14 16 37 H 0.04 1.00 6.95 -51.93 -0.36 0.64 16 38 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.07 0.79 6.43 -51.93 -0.33 0.46 16 42 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 LS Contribution 304.88 15.07 4.59 4.59 Total: -1.00 -27.64 304.88 -8.53 -36.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.31 Total: -0.35 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: 0.61 Total: -9.82 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -1.40 Total: -46.92 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.64 -8.53 -36.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.817 kcal (2) G-P(sol) polarization free energy of solvation -27.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds