Wall clock time and date at job start Mon Mar 30 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47211 * 2 1 4 4 C 1.52992 * 109.47079 * 120.00209 * 2 1 3 5 5 H 1.09004 * 109.49027 * 59.98288 * 4 2 1 6 6 C 1.53044 * 109.49071 * 299.91377 * 4 2 1 7 7 N 1.46958 * 109.36539 * 181.63351 * 6 4 2 8 8 C 1.46901 * 110.99728 * 183.19036 * 7 6 4 9 9 H 1.08999 * 109.47911 * 62.24624 * 8 7 6 10 10 C 1.53001 * 109.46846 * 182.24686 * 8 7 6 11 11 C 1.50700 * 109.47440 * 302.24198 * 8 7 6 12 12 H 1.08004 * 119.99655 * 0.02562 * 11 8 7 13 13 C 1.37873 * 120.00477 * 180.02562 * 11 8 7 14 14 N 1.31515 * 119.99972 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 119.99986 * 180.02562 * 13 11 8 16 16 H 1.48500 * 109.46754 * 90.00268 * 15 13 11 17 17 H 1.48505 * 109.46827 * 209.99672 * 15 13 11 18 18 H 1.48496 * 109.47002 * 329.99859 * 15 13 11 19 19 C 1.46952 * 110.88149 * 59.32331 * 7 6 4 20 20 C 1.53055 * 109.36084 * 300.67539 * 19 7 6 21 21 N 1.46955 * 109.48920 * 180.02562 * 4 2 1 22 22 C 1.46901 * 111.00408 * 303.15636 * 21 4 2 23 23 H 1.08996 * 109.47402 * 186.61701 * 1 2 3 24 24 H 1.08995 * 109.47225 * 306.62013 * 1 2 3 25 25 H 1.08998 * 109.47524 * 66.61756 * 1 2 3 26 26 H 1.09005 * 109.46578 * 240.00218 * 2 1 3 27 27 H 1.08991 * 109.46910 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.46931 * 300.00577 * 3 2 1 29 29 H 1.08995 * 109.46977 * 60.00059 * 3 2 1 30 30 H 1.09002 * 109.48991 * 301.60244 * 6 4 2 31 31 H 1.09001 * 109.49032 * 61.64492 * 6 4 2 32 32 H 1.08996 * 109.47165 * 59.99790 * 10 8 7 33 33 H 1.09002 * 109.47302 * 179.97438 * 10 8 7 34 34 H 1.08996 * 109.47194 * 299.99313 * 10 8 7 35 35 H 0.96999 * 120.00162 * 179.97438 * 14 13 11 36 36 H 1.09001 * 109.48757 * 180.71606 * 19 7 6 37 37 H 1.08997 * 109.49257 * 60.64501 * 19 7 6 38 38 H 1.09005 * 109.48799 * 178.36784 * 20 19 7 39 39 H 1.09002 * 109.49322 * 298.43413 * 20 19 7 40 40 H 1.08999 * 109.47176 * 303.09594 * 22 21 4 41 41 H 1.09001 * 109.46929 * 63.09190 * 22 21 4 42 42 H 1.08999 * 109.47423 * 183.08824 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 1.6765 -1.7489 1.2496 6 6 1.5318 0.0011 2.4991 7 7 2.0552 -0.6707 3.6967 8 6 1.5280 -0.0517 4.9202 9 1 0.4438 -0.1607 4.9446 10 6 2.1373 -0.7401 6.1433 11 6 1.8863 1.4120 4.9373 12 1 2.4490 1.8397 4.1206 13 6 1.4958 2.2051 5.9953 14 7 0.8111 1.6841 6.9900 15 14 1.9393 4.0196 6.0160 16 1 0.8620 4.7999 5.3559 17 1 2.0914 4.4759 7.4209 18 1 3.2170 4.2251 5.2876 19 6 3.5247 -0.6704 3.6974 20 6 4.0329 -1.3929 2.4475 21 7 3.5095 -0.7210 1.2499 22 6 4.0368 -1.3399 0.0264 23 1 -0.3634 -1.0208 0.1184 24 1 -0.3633 0.6130 0.8248 25 1 -0.3634 0.4078 -0.9432 26 1 1.8932 -0.5138 -0.8901 27 1 3.1299 1.4424 -0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.8726 1.0363 2.4846 31 1 0.4422 -0.0229 2.5152 32 1 3.2215 -0.6311 6.1190 33 1 1.7465 -0.2805 7.0512 34 1 1.8782 -1.7987 6.1311 35 1 0.5367 2.2420 7.7345 36 1 3.8881 -1.1843 4.5874 37 1 3.8882 0.3572 3.6966 38 1 5.1226 -1.3686 2.4311 39 1 3.6921 -2.4281 2.4619 40 1 3.6434 -2.3521 -0.0673 41 1 3.7331 -0.7505 -0.8388 42 1 5.1250 -1.3762 0.0774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261024166.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:42 Heat of formation + Delta-G solvation = -12.169588 kcal Electronic energy + Delta-G solvation = -19047.065480 eV Core-core repulsion = 16447.149604 eV Total energy + Delta-G solvation = -2599.915877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77041 -37.70223 -35.65426 -34.44632 -31.36975 -30.60125 -28.09402 -27.78162 -27.25176 -24.98993 -24.39302 -22.53662 -20.97066 -19.70532 -18.25081 -17.28495 -16.56969 -16.27330 -16.04883 -15.54688 -15.27155 -14.99568 -14.67082 -14.42568 -13.89779 -13.53280 -13.42344 -13.31303 -13.12890 -12.88783 -12.74300 -12.58125 -12.46277 -12.20144 -12.17493 -12.04991 -11.81440 -11.80442 -11.47491 -11.38426 -11.15523 -10.83089 -10.48600 -9.19285 -8.91561 -8.04268 -6.26106 1.35818 1.37633 1.47020 2.39572 3.03632 3.14750 3.40360 3.87736 4.03625 4.15282 4.32837 4.40873 4.44429 4.51853 4.57441 4.68749 4.75224 4.82520 4.83440 4.88202 4.90736 5.02946 5.07262 5.09230 5.13276 5.15112 5.17235 5.24251 5.28598 5.33947 5.50216 5.53422 5.60254 5.69382 5.96706 6.16558 6.19511 6.26784 6.41717 6.65098 6.93748 7.44542 8.91747 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023907 B = 0.008253 C = 0.007331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.931672 B = 3391.728624 C = 3818.585560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.082 4.082 3 C -0.135 4.135 4 C 0.100 3.900 5 H 0.035 0.965 6 C 0.076 3.924 7 N -0.543 5.543 8 C 0.211 3.789 9 H 0.002 0.998 10 C -0.121 4.121 11 C -0.542 4.542 12 H 0.047 0.953 13 C 0.021 3.979 14 N -0.914 5.914 15 Si 0.946 3.054 16 H -0.277 1.277 17 H -0.281 1.281 18 H -0.274 1.274 19 C 0.064 3.936 20 C 0.067 3.933 21 N -0.548 5.548 22 C 0.025 3.975 23 H 0.056 0.944 24 H 0.041 0.959 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.029 0.971 31 H 0.053 0.947 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.028 0.972 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.017 0.983 38 H 0.090 0.910 39 H 0.035 0.965 40 H 0.026 0.974 41 H 0.079 0.921 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 -4.832 -13.850 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C -0.192 4.192 4 C -0.009 4.009 5 H 0.053 0.947 6 C -0.052 4.052 7 N -0.267 5.267 8 C 0.104 3.896 9 H 0.020 0.980 10 C -0.179 4.179 11 C -0.581 4.581 12 H 0.065 0.935 13 C -0.179 4.179 14 N -0.553 5.553 15 Si 0.772 3.228 16 H -0.203 1.203 17 H -0.206 1.206 18 H -0.199 1.199 19 C -0.065 4.065 20 C -0.061 4.061 21 N -0.273 5.273 22 C -0.122 4.122 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.035 0.965 38 H 0.109 0.891 39 H 0.054 0.946 40 H 0.045 0.955 41 H 0.098 0.902 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.108 -4.799 -13.665 15.055 hybrid contribution -0.081 1.104 0.723 1.323 sum 4.027 -3.695 -12.942 14.048 Atomic orbital electron populations 1.21850 0.94666 1.01785 1.02038 1.21137 0.95844 0.96664 0.96432 1.21720 1.01419 0.95443 1.00665 1.21677 0.87243 0.97209 0.94732 0.94712 1.21974 0.97954 0.96120 0.89194 1.62622 1.07366 1.53674 1.03023 1.19035 0.93260 0.90881 0.86456 0.97963 1.21668 0.98700 0.96914 1.00660 1.21852 1.35125 0.95919 1.05252 0.93450 1.25604 0.94948 1.02047 0.95284 1.69997 1.38775 1.36760 1.09778 0.85748 0.78543 0.81248 0.77273 1.20300 1.20634 1.19867 1.21993 0.88703 0.98312 0.97469 1.22138 0.99652 0.95280 0.89038 1.62102 1.07460 1.54831 1.02913 1.22438 1.00640 0.97044 0.92081 0.92522 0.93986 0.90846 0.89367 0.92344 0.91857 0.94895 0.95314 0.92818 0.94756 0.92150 0.95324 0.92888 0.91112 0.96505 0.89126 0.94643 0.95543 0.90209 0.90595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 8.64 71.98 0.62 -2.94 16 2 C -0.08 -2.10 2.28 -10.80 -0.02 -2.12 16 3 C -0.14 -3.69 8.68 71.98 0.62 -3.06 16 4 C 0.10 3.17 1.78 44.92 0.08 3.25 16 5 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 6 C 0.08 3.10 3.79 86.31 0.33 3.43 16 7 N -0.54 -24.07 4.75 -874.88 -4.16 -28.23 16 8 C 0.21 10.97 2.47 44.17 0.11 11.08 16 9 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 10 C -0.12 -6.03 8.54 71.98 0.61 -5.41 16 11 C -0.54 -30.08 7.13 25.60 0.18 -29.90 16 12 H 0.05 2.69 5.80 -2.91 -0.02 2.67 16 13 C 0.02 1.16 5.30 84.65 0.45 1.61 16 14 N -0.91 -52.95 11.32 21.45 0.24 -52.71 16 15 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 16 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 17 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 18 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 19 C 0.06 2.55 4.89 86.31 0.42 2.98 16 20 C 0.07 2.10 5.62 86.31 0.48 2.58 16 21 N -0.55 -16.35 4.02 -896.55 -3.60 -19.95 16 22 C 0.03 0.56 9.05 127.69 1.16 1.71 16 23 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 24 H 0.04 1.20 6.84 -2.39 -0.02 1.18 16 25 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.09 1.89 6.43 -2.38 -0.02 1.87 16 27 H 0.06 1.64 7.60 -2.39 -0.02 1.62 16 28 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.03 1.07 6.39 -2.39 -0.02 1.06 16 30 H 0.03 1.32 4.66 -2.39 -0.01 1.30 16 31 H 0.05 2.27 6.68 -2.39 -0.02 2.25 16 32 H 0.03 1.62 6.26 -2.39 -0.01 1.60 16 33 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 34 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 36 H 0.07 2.81 6.03 -2.39 -0.01 2.80 16 37 H 0.02 0.76 6.95 -2.39 -0.02 0.74 16 38 H 0.09 2.42 8.10 -2.38 -0.02 2.40 16 39 H 0.04 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.08 1.55 6.43 -2.39 -0.02 1.54 16 42 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 Total: -1.00 -60.28 304.88 0.53 -59.75 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.97 Total: 11.46 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: 5.05 Total: -16.80 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -7.52 Total: -100.89 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -60.28 0.53 -59.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261024166.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.584 kcal (2) G-P(sol) polarization free energy of solvation -60.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds