Wall clock time and date at job start Mon Mar 30 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46990 * 2 1 4 4 C 1.46952 * 111.00369 * 52.45893 * 3 2 1 5 5 C 1.53046 * 109.36552 * 183.19160 * 4 3 2 6 6 N 1.46953 * 109.36531 * 301.59334 * 5 4 3 7 7 C 1.46902 * 111.00213 * 183.19237 * 6 5 4 8 8 C 1.50694 * 109.46805 * 300.88032 * 7 6 5 9 9 H 1.08007 * 120.00499 * 355.50916 * 8 7 6 10 10 C 1.37877 * 119.99913 * 175.50470 * 8 7 6 11 11 N 1.31514 * 120.00056 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46847 * 60.00309 * 12 10 8 14 14 H 1.48502 * 109.47543 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47047 * 300.00280 * 12 10 8 16 16 C 1.46958 * 110.87804 * 59.32204 * 6 5 4 17 17 C 1.46960 * 111.00218 * 176.26075 * 3 2 1 18 18 H 1.09003 * 109.48259 * 296.77643 * 17 3 2 19 19 C 1.53001 * 109.50787 * 56.82768 * 17 3 2 20 20 C 1.53000 * 109.46959 * 60.18140 * 19 17 3 21 21 C 1.53003 * 109.46981 * 180.18028 * 19 17 3 22 22 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47440 * 300.00264 * 1 2 3 24 24 H 1.09008 * 109.46881 * 60.00135 * 1 2 3 25 25 H 1.09000 * 109.47231 * 240.00094 * 2 1 3 26 26 H 1.08998 * 109.47623 * 119.99676 * 2 1 3 27 27 H 1.09000 * 109.49106 * 63.21959 * 4 3 2 28 28 H 1.09009 * 109.50154 * 303.16387 * 4 3 2 29 29 H 1.09006 * 109.48660 * 181.62820 * 5 4 3 30 30 H 1.08996 * 109.51251 * 61.57816 * 5 4 3 31 31 H 1.08995 * 109.47324 * 60.88235 * 7 6 5 32 32 H 1.08997 * 109.46990 * 180.88662 * 7 6 5 33 33 H 0.97005 * 120.00284 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.48690 * 180.71306 * 16 6 5 35 35 H 1.09003 * 109.50617 * 60.66346 * 16 6 5 36 36 H 1.09002 * 109.47301 * 300.17975 * 19 17 3 37 37 H 1.09001 * 109.47088 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.47027 * 299.99478 * 20 19 17 39 39 H 1.09002 * 109.47249 * 59.99804 * 20 19 17 40 40 H 1.09001 * 109.46824 * 54.04452 * 21 19 17 41 41 H 1.08997 * 109.47175 * 174.04568 * 21 19 17 42 42 H 1.09000 * 109.46888 * 294.04895 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4070 2.1602 1.0878 5 6 1.8808 3.6132 1.0048 6 7 3.3471 3.6534 1.0943 7 6 3.8367 5.0384 1.0943 8 6 3.3932 5.7280 -0.1701 9 1 2.8690 5.1717 -0.9332 10 6 3.6564 7.0690 -0.3527 11 7 4.2951 7.7462 0.5763 12 14 3.1060 7.9240 -1.9197 13 1 1.6292 7.8283 -2.0432 14 1 3.5075 9.3529 -1.8713 15 1 3.7441 7.2704 -3.0905 16 6 3.9598 2.8782 0.0065 17 6 3.4859 1.4253 0.0895 18 1 3.8043 0.9925 1.0379 19 6 4.0905 0.6244 -1.0656 20 6 3.6480 1.2357 -2.3965 21 6 5.6170 0.6632 -0.9690 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7018 1.7359 2.0475 28 1 0.3217 2.1257 0.9928 29 1 1.4504 4.1836 1.8279 30 1 1.5624 4.0463 0.0566 31 1 3.4321 5.5669 1.9575 32 1 4.9255 5.0389 1.1456 33 1 4.4806 8.6896 0.4476 34 1 5.0450 2.9128 0.1019 35 1 3.6654 3.3025 -0.9534 36 1 3.7490 -0.4092 -1.0090 37 1 4.0783 0.6649 -3.2194 38 1 2.5605 1.2080 -2.4653 39 1 3.9895 2.2693 -2.4531 40 1 5.9271 0.3262 0.0202 41 1 6.0457 0.0078 -1.7271 42 1 5.9655 1.6832 -1.1312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261026513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:07 Heat of formation + Delta-G solvation = -0.697659 kcal Electronic energy + Delta-G solvation = -18833.981948 eV Core-core repulsion = 16234.563531 eV Total energy + Delta-G solvation = -2599.418416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.43303 -35.64909 -34.88615 -32.48740 -30.34295 -29.12779 -27.23418 -26.78960 -24.84153 -23.64994 -22.30642 -20.95700 -19.85308 -18.42627 -16.42601 -15.78997 -15.09344 -14.79802 -14.63771 -14.31129 -13.88683 -13.45380 -13.27766 -12.89700 -12.87078 -12.34201 -12.04272 -11.90911 -11.68225 -11.46529 -11.31645 -11.06204 -10.93559 -10.82653 -10.70910 -10.61266 -10.38585 -10.24168 -10.00938 -9.80554 -9.73846 -9.36655 -8.39526 -7.92597 -7.09466 -5.98864 -4.07767 3.31301 3.35877 3.38926 4.18924 4.43824 4.97894 5.03667 5.17416 5.30550 5.32291 5.33249 5.39069 5.58404 5.64029 5.76321 5.81608 5.87660 5.91093 5.97303 6.01718 6.10663 6.12999 6.17793 6.25123 6.27980 6.36388 6.43752 6.53789 6.68279 6.73981 6.88919 6.97567 7.28158 7.46320 7.52902 7.56186 7.94072 8.11601 8.34516 8.35344 9.03002 9.58858 11.05986 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.007385 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.444461 B = 3790.564166 C = 4099.351633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 N -0.530 5.530 4 C 0.055 3.945 5 C 0.065 3.935 6 N -0.546 5.546 7 C 0.188 3.812 8 C -0.547 4.547 9 H 0.058 0.942 10 C 0.065 3.935 11 N -0.893 5.893 12 Si 0.888 3.112 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.069 3.931 17 C 0.092 3.908 18 H 0.039 0.961 19 C -0.088 4.088 20 C -0.141 4.141 21 C -0.148 4.148 22 H 0.053 0.947 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.030 0.970 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.262 0.738 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.040 0.960 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.050 0.950 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.450 -14.788 -2.010 15.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.079 4.079 3 N -0.255 5.255 4 C -0.073 4.073 5 C -0.064 4.064 6 N -0.270 5.270 7 C 0.062 3.938 8 C -0.586 4.586 9 H 0.076 0.924 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.059 4.059 17 C -0.016 4.016 18 H 0.057 0.943 19 C -0.107 4.107 20 C -0.198 4.198 21 C -0.205 4.205 22 H 0.072 0.928 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.379 -14.589 -1.941 15.100 hybrid contribution -0.259 0.638 -0.829 1.077 sum -3.638 -13.951 -2.769 14.681 Atomic orbital electron populations 1.21879 0.95456 1.01099 1.02548 1.22083 0.95388 0.90251 1.00190 1.62178 1.06398 1.11026 1.45907 1.22303 0.98471 0.94889 0.91640 1.21913 0.89958 0.93264 1.01226 1.62666 1.05087 1.15994 1.43258 1.19711 0.95666 0.81995 0.96398 1.21735 1.37604 0.94928 1.04309 0.92368 1.24957 0.94978 0.97469 0.96365 1.69937 1.40733 1.08927 1.33538 0.86721 0.79169 0.78530 0.83992 1.20259 1.21269 1.20271 1.22043 0.98250 0.90518 0.95117 1.21770 0.86566 0.97121 0.96152 0.94320 1.21135 0.95225 0.98616 0.95706 1.21788 1.01943 1.01022 0.95041 1.21872 0.95227 1.02354 1.01085 0.92819 0.92456 0.91919 0.90852 0.95692 0.95144 0.90853 0.91575 0.93326 0.94897 0.95587 0.92824 0.91539 0.93030 0.91899 0.94070 0.91809 0.92021 0.92974 0.93085 0.91857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.43 37.16 0.35 -1.34 16 2 C 0.05 0.62 5.25 -3.82 -0.02 0.60 16 3 N -0.53 -8.30 3.88 -226.49 -0.88 -9.18 16 4 C 0.05 0.90 5.13 -3.77 -0.02 0.88 16 5 C 0.07 1.32 5.24 -3.77 -0.02 1.30 16 6 N -0.55 -12.04 4.92 -235.92 -1.16 -13.20 16 7 C 0.19 4.92 5.14 -4.98 -0.03 4.89 16 8 C -0.55 -15.15 7.66 -34.44 -0.26 -15.42 16 9 H 0.06 1.62 5.82 -52.48 -0.31 1.31 16 10 C 0.06 1.83 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 12 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 16 C 0.07 1.38 3.89 -3.77 -0.01 1.36 16 17 C 0.09 1.50 1.77 -67.66 -0.12 1.38 16 18 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 19 C -0.09 -1.20 2.28 -90.62 -0.21 -1.41 16 20 C -0.14 -2.00 8.68 37.16 0.32 -1.67 16 21 C -0.15 -1.89 8.67 37.16 0.32 -1.57 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.06 0.64 6.25 -51.93 -0.32 0.32 16 24 H 0.06 0.73 8.14 -51.92 -0.42 0.30 16 25 H 0.07 0.88 6.47 -51.93 -0.34 0.55 16 26 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.08 6.01 -51.92 -0.31 0.77 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.09 6.61 -51.93 -0.34 0.75 16 31 H 0.03 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.03 0.72 8.12 -51.93 -0.42 0.30 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.33 6.65 -51.93 -0.35 0.98 16 35 H 0.05 1.13 4.98 -51.93 -0.26 0.87 16 36 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 37 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.94 7.61 -51.93 -0.40 0.55 16 39 H 0.06 1.00 6.39 -51.93 -0.33 0.66 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.89 6.81 -51.93 -0.35 0.53 16 LS Contribution 309.41 15.07 4.66 4.66 Total: -1.00 -28.72 309.41 -8.88 -37.59 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -7.42 Total: -1.57 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 0.21 Total: -9.25 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -1.30 Total: -48.10 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.72 -8.88 -37.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.897 kcal (2) G-P(sol) polarization free energy of solvation -28.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds