Wall clock time and date at job start Mon Mar 30 2020 03:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46902 * 109.46990 * 2 1 4 4 C 1.46952 * 111.00369 * 52.45893 * 3 2 1 5 5 C 1.53046 * 109.36552 * 183.19160 * 4 3 2 6 6 N 1.46953 * 109.36531 * 301.59334 * 5 4 3 7 7 C 1.46902 * 111.00213 * 183.19237 * 6 5 4 8 8 C 1.50694 * 109.46805 * 300.88032 * 7 6 5 9 9 H 1.08007 * 120.00499 * 355.50916 * 8 7 6 10 10 C 1.37877 * 119.99913 * 175.50470 * 8 7 6 11 11 N 1.31514 * 120.00056 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00331 * 180.02562 * 10 8 7 13 13 H 1.48503 * 109.46847 * 60.00309 * 12 10 8 14 14 H 1.48502 * 109.47543 * 180.02562 * 12 10 8 15 15 H 1.48499 * 109.47047 * 300.00280 * 12 10 8 16 16 C 1.46958 * 110.87804 * 59.32204 * 6 5 4 17 17 C 1.46960 * 111.00218 * 176.26075 * 3 2 1 18 18 H 1.09003 * 109.48259 * 296.77643 * 17 3 2 19 19 C 1.53001 * 109.50787 * 56.82768 * 17 3 2 20 20 C 1.53000 * 109.46959 * 60.18140 * 19 17 3 21 21 C 1.53003 * 109.46981 * 180.18028 * 19 17 3 22 22 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47440 * 300.00264 * 1 2 3 24 24 H 1.09008 * 109.46881 * 60.00135 * 1 2 3 25 25 H 1.09000 * 109.47231 * 240.00094 * 2 1 3 26 26 H 1.08998 * 109.47623 * 119.99676 * 2 1 3 27 27 H 1.09000 * 109.49106 * 63.21959 * 4 3 2 28 28 H 1.09009 * 109.50154 * 303.16387 * 4 3 2 29 29 H 1.09006 * 109.48660 * 181.62820 * 5 4 3 30 30 H 1.08996 * 109.51251 * 61.57816 * 5 4 3 31 31 H 1.08995 * 109.47324 * 60.88235 * 7 6 5 32 32 H 1.08997 * 109.46990 * 180.88662 * 7 6 5 33 33 H 0.97005 * 120.00284 * 179.97438 * 11 10 8 34 34 H 1.09000 * 109.48690 * 180.71306 * 16 6 5 35 35 H 1.09003 * 109.50617 * 60.66346 * 16 6 5 36 36 H 1.09002 * 109.47301 * 300.17975 * 19 17 3 37 37 H 1.09001 * 109.47088 * 180.02562 * 20 19 17 38 38 H 1.08998 * 109.47027 * 299.99478 * 20 19 17 39 39 H 1.09002 * 109.47249 * 59.99804 * 20 19 17 40 40 H 1.09001 * 109.46824 * 54.04452 * 21 19 17 41 41 H 1.08997 * 109.47175 * 174.04568 * 21 19 17 42 42 H 1.09000 * 109.46888 * 294.04895 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4070 2.1602 1.0878 5 6 1.8808 3.6132 1.0048 6 7 3.3471 3.6534 1.0943 7 6 3.8367 5.0384 1.0943 8 6 3.3932 5.7280 -0.1701 9 1 2.8690 5.1717 -0.9332 10 6 3.6564 7.0690 -0.3527 11 7 4.2951 7.7462 0.5763 12 14 3.1060 7.9240 -1.9197 13 1 1.6292 7.8283 -2.0432 14 1 3.5075 9.3529 -1.8713 15 1 3.7441 7.2704 -3.0905 16 6 3.9598 2.8782 0.0065 17 6 3.4859 1.4253 0.0895 18 1 3.8043 0.9925 1.0379 19 6 4.0905 0.6244 -1.0656 20 6 3.6480 1.2357 -2.3965 21 6 5.6170 0.6632 -0.9690 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.7018 1.7359 2.0475 28 1 0.3217 2.1257 0.9928 29 1 1.4504 4.1836 1.8279 30 1 1.5624 4.0463 0.0566 31 1 3.4321 5.5669 1.9575 32 1 4.9255 5.0389 1.1456 33 1 4.4806 8.6896 0.4476 34 1 5.0450 2.9128 0.1019 35 1 3.6654 3.3025 -0.9534 36 1 3.7490 -0.4092 -1.0090 37 1 4.0783 0.6649 -3.2194 38 1 2.5605 1.2080 -2.4653 39 1 3.9895 2.2693 -2.4531 40 1 5.9271 0.3262 0.0202 41 1 6.0457 0.0078 -1.7271 42 1 5.9655 1.6832 -1.1312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261026513.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:07 Heat of formation + Delta-G solvation = -19.628162 kcal Electronic energy + Delta-G solvation = -18834.802836 eV Core-core repulsion = 16234.563531 eV Total energy + Delta-G solvation = -2600.239305 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.82768 -37.32071 -36.05305 -34.56802 -31.67036 -30.53626 -28.96002 -27.97439 -26.57690 -25.06079 -23.97036 -22.23170 -21.41327 -19.80537 -18.47682 -17.24725 -16.62558 -16.34006 -16.08633 -15.56541 -15.45603 -14.98304 -14.72395 -14.35981 -14.22368 -13.90718 -13.42684 -13.31162 -12.96657 -12.91641 -12.66981 -12.62182 -12.48958 -12.27934 -12.21062 -12.00533 -11.91301 -11.80376 -11.79930 -11.44853 -11.23213 -10.88582 -10.61050 -9.19510 -8.98394 -8.15891 -6.35675 1.35440 1.37007 1.45351 2.36419 2.97211 3.08191 3.36735 3.84066 4.01054 4.10954 4.24988 4.31482 4.37970 4.44652 4.50458 4.55900 4.66178 4.69911 4.78811 4.83231 4.88068 4.93680 5.08723 5.10714 5.11342 5.16527 5.19303 5.22803 5.27788 5.30368 5.31779 5.40384 5.50707 5.59967 5.72655 6.03553 6.18149 6.19279 6.36643 6.54190 6.84827 7.35524 8.86246 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023815 B = 0.007385 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.444461 B = 3790.564166 C = 4099.351633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.540 5.540 4 C 0.066 3.934 5 C 0.067 3.933 6 N -0.548 5.548 7 C 0.202 3.798 8 C -0.553 4.553 9 H 0.054 0.946 10 C 0.013 3.987 11 N -0.927 5.927 12 Si 0.956 3.044 13 H -0.270 1.270 14 H -0.280 1.280 15 H -0.271 1.271 16 C 0.075 3.925 17 C 0.101 3.899 18 H 0.035 0.965 19 C -0.081 4.081 20 C -0.135 4.135 21 C -0.146 4.146 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.023 0.977 31 H 0.005 0.995 32 H 0.000 1.000 33 H 0.265 0.735 34 H 0.057 0.943 35 H 0.028 0.972 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.032 0.968 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -16.903 -3.217 17.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.062 4.062 5 C -0.062 4.062 6 N -0.271 5.271 7 C 0.075 3.925 8 C -0.592 4.592 9 H 0.072 0.928 10 C -0.187 4.187 11 N -0.566 5.566 12 Si 0.781 3.219 13 H -0.195 1.195 14 H -0.205 1.205 15 H -0.196 1.196 16 C -0.053 4.053 17 C -0.008 4.008 18 H 0.053 0.947 19 C -0.100 4.100 20 C -0.192 4.192 21 C -0.204 4.204 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.104 0.896 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.114 0.886 29 H 0.077 0.923 30 H 0.041 0.959 31 H 0.024 0.976 32 H 0.019 0.981 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.365 -16.731 -3.150 17.575 hybrid contribution 0.055 1.268 -0.421 1.337 sum -4.310 -15.463 -3.571 16.445 Atomic orbital electron populations 1.21852 0.94074 1.02543 1.02108 1.22186 0.96515 0.88078 1.01009 1.62168 1.05789 1.13193 1.45434 1.22169 0.99692 0.92111 0.92188 1.21927 0.88510 0.96227 0.99517 1.62611 1.06479 1.13605 1.44447 1.19363 0.93900 0.84309 0.94932 1.21902 1.37419 0.95336 1.04576 0.92758 1.25804 0.94953 0.98216 0.99707 1.70059 1.41737 1.09338 1.35502 0.85644 0.78938 0.77505 0.79843 1.19513 1.20484 1.19571 1.22015 0.97679 0.92690 0.92944 1.21659 0.87397 0.94437 0.97300 0.94677 1.21133 0.95611 0.99200 0.94084 1.21722 1.01608 0.99719 0.96199 1.21857 0.94652 1.01662 1.02198 0.90497 0.92665 0.92543 0.89629 0.95094 0.94871 0.88576 0.92269 0.95862 0.97636 0.98138 0.92573 0.92489 0.95362 0.89396 0.91813 0.92339 0.94844 0.92495 0.90802 0.93926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.43 71.98 0.68 -2.11 16 2 C 0.05 1.09 5.25 86.30 0.45 1.54 16 3 N -0.54 -16.00 3.88 -870.49 -3.37 -19.37 16 4 C 0.07 2.10 5.13 86.31 0.44 2.55 16 5 C 0.07 2.76 5.24 86.31 0.45 3.21 16 6 N -0.55 -24.99 4.92 -900.32 -4.43 -29.42 16 7 C 0.20 11.10 5.14 85.55 0.44 11.54 16 8 C -0.55 -31.71 7.66 25.60 0.20 -31.52 16 9 H 0.05 3.11 5.82 -2.91 -0.02 3.09 16 10 C 0.01 0.72 5.46 84.65 0.46 1.19 16 11 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 12 Si 0.96 44.97 29.54 68.60 2.03 46.99 16 13 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 C 0.08 3.06 3.89 86.31 0.34 3.39 16 17 C 0.10 3.18 1.77 44.92 0.08 3.26 16 18 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 19 C -0.08 -2.05 2.28 -10.79 -0.02 -2.08 16 20 C -0.14 -3.62 8.68 71.98 0.62 -3.00 16 21 C -0.15 -3.49 8.67 71.98 0.62 -2.86 16 22 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 23 H 0.05 1.06 6.25 -2.39 -0.01 1.05 16 24 H 0.06 1.14 8.14 -2.38 -0.02 1.13 16 25 H 0.09 1.72 6.47 -2.39 -0.02 1.70 16 26 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.10 2.63 6.01 -2.38 -0.01 2.61 16 29 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.02 1.07 6.61 -2.39 -0.02 1.05 16 31 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.00 0.03 8.12 -2.39 -0.02 0.01 16 33 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 34 H 0.06 2.38 6.65 -2.39 -0.02 2.36 16 35 H 0.03 1.28 4.98 -2.39 -0.01 1.27 16 36 H 0.09 1.86 6.43 -2.39 -0.02 1.84 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.06 1.62 7.61 -2.39 -0.02 1.60 16 39 H 0.03 1.07 6.39 -2.39 -0.02 1.06 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.04 1.18 6.81 -2.39 -0.02 1.17 16 Total: -1.00 -63.22 309.41 0.24 -62.98 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: 0.97 Total: 9.72 kcal Atomic # 6 Polarization: -19.66 SS G_CDS: 4.76 Total: -14.89 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -7.52 Total: -104.80 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -63.22 0.24 -62.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261026513.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.351 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds