Wall clock time and date at job start Mon Mar 30 2020 03:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47078 * 2 1 4 4 C 1.52997 * 109.46987 * 239.99592 * 2 1 3 5 5 H 1.09005 * 109.48106 * 180.52163 * 4 2 1 6 6 C 1.53043 * 109.48957 * 60.46128 * 4 2 1 7 7 N 1.46957 * 109.36725 * 181.62636 * 6 4 2 8 8 C 1.46898 * 110.99940 * 183.18368 * 7 6 4 9 9 C 1.46961 * 110.87734 * 59.32044 * 7 6 4 10 10 C 1.53052 * 109.36323 * 300.68111 * 9 7 6 11 11 N 1.46951 * 109.48980 * 300.56467 * 4 2 1 12 12 C 1.46902 * 111.00561 * 303.15417 * 11 4 2 13 13 H 1.09002 * 109.46348 * 51.95218 * 12 11 4 14 14 C 1.53000 * 109.47378 * 171.94876 * 12 11 4 15 15 C 1.50695 * 109.47035 * 291.95452 * 12 11 4 16 16 H 1.07994 * 120.00155 * 359.97438 * 15 12 11 17 17 C 1.37879 * 119.99784 * 179.97438 * 15 12 11 18 18 N 1.31516 * 119.99934 * 359.97438 * 17 15 12 19 19 Si 1.86804 * 120.00173 * 179.97438 * 17 15 12 20 20 H 1.48503 * 109.46693 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46924 * 119.99829 * 19 17 15 22 22 H 1.48498 * 109.47132 * 239.99920 * 19 17 15 23 23 H 1.09003 * 109.47242 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47334 * 299.99869 * 1 2 3 25 25 H 1.08997 * 109.46791 * 60.00218 * 1 2 3 26 26 H 1.09006 * 109.46887 * 119.99593 * 2 1 3 27 27 H 1.09006 * 109.47413 * 60.59185 * 3 2 1 28 28 H 1.09002 * 109.46903 * 180.58829 * 3 2 1 29 29 H 1.08994 * 109.47237 * 300.58646 * 3 2 1 30 30 H 1.09004 * 109.48714 * 301.59380 * 6 4 2 31 31 H 1.09003 * 109.49365 * 61.65555 * 6 4 2 32 32 H 1.09002 * 109.47461 * 292.24451 * 8 7 6 33 33 H 1.08995 * 109.47008 * 52.25238 * 8 7 6 34 34 H 1.09000 * 109.46954 * 172.24702 * 8 7 6 35 35 H 1.08993 * 109.48652 * 180.71395 * 9 7 6 36 36 H 1.08998 * 109.50553 * 60.65722 * 9 7 6 37 37 H 1.09004 * 109.48781 * 298.43521 * 10 9 7 38 38 H 1.09004 * 109.48694 * 178.37405 * 10 9 7 39 39 H 1.08998 * 109.46745 * 307.17310 * 14 12 11 40 40 H 1.08992 * 109.47201 * 67.17261 * 14 12 11 41 41 H 1.08997 * 109.46951 * 187.17556 * 14 12 11 42 42 H 0.97001 * 120.00146 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 1 3.1300 -0.7295 -1.2447 6 6 1.5395 0.0064 -2.4991 7 7 1.9983 -0.7107 -3.6970 8 6 1.6012 -0.0005 -4.9200 9 6 1.4975 -2.0923 -3.7042 10 6 1.9979 -2.8200 -2.4542 11 7 1.5392 -2.1029 -1.2563 12 6 1.9362 -2.8132 -0.0333 13 1 1.6507 -2.2237 0.8380 14 6 1.2346 -4.1719 0.0180 15 6 3.4292 -3.0184 -0.0337 16 1 4.0236 -2.6576 -0.8601 17 6 4.0362 -3.6667 1.0209 18 7 3.3124 -4.1056 2.0274 19 14 5.8868 -3.9217 1.0201 20 1 6.4661 -3.3389 -0.2168 21 1 6.4791 -3.2530 2.2064 22 1 6.1861 -5.3753 1.0703 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8933 -0.5138 0.8901 27 1 1.6854 1.9533 0.8953 28 1 3.1300 1.4425 -0.0106 29 1 1.6681 1.9593 -0.8846 30 1 0.4500 0.0385 -2.4894 31 1 1.9335 1.0227 -2.5105 32 1 0.5171 -0.0385 -5.0266 33 1 1.9240 1.0387 -4.8577 34 1 2.0680 -0.4747 -5.7833 35 1 1.8608 -2.6061 -4.5941 36 1 0.4075 -2.0843 -3.7084 37 1 3.0875 -2.8522 -2.4639 38 1 1.6039 -3.8363 -2.4429 39 1 0.1613 -4.0315 -0.1098 40 1 1.6156 -4.8079 -0.7810 41 1 1.4272 -4.6441 0.9813 42 1 3.7394 -4.5620 2.7692 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:21 Heat of formation + Delta-G solvation = -11.615705 kcal Electronic energy + Delta-G solvation = -19235.980703 eV Core-core repulsion = 16636.088844 eV Total energy + Delta-G solvation = -2599.891858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.76367 -37.21179 -36.24042 -34.24005 -31.27029 -30.44709 -28.17672 -27.81234 -27.15278 -24.99232 -24.49907 -21.84981 -21.48292 -19.80554 -17.94007 -17.28974 -16.67304 -16.16180 -15.96782 -15.53418 -15.25195 -14.97120 -14.64962 -14.20330 -14.16035 -13.61047 -13.36770 -13.22173 -13.02903 -12.89667 -12.66422 -12.61780 -12.50049 -12.25053 -12.09312 -12.00470 -11.90342 -11.75001 -11.47317 -11.22753 -11.11325 -10.77582 -10.38331 -9.20143 -8.86424 -8.02762 -6.22141 1.33542 1.37049 1.46879 2.40351 3.09379 3.17218 3.39987 3.97763 4.09795 4.20650 4.34172 4.42898 4.44664 4.55510 4.59256 4.73189 4.74560 4.77232 4.91441 4.92696 4.95544 5.03959 5.06247 5.08516 5.11023 5.17212 5.23917 5.27334 5.35982 5.39868 5.56520 5.61292 5.66150 5.76221 6.01885 6.15566 6.20878 6.27899 6.45178 6.72655 6.99470 7.47835 8.93769 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021971 B = 0.008991 C = 0.008185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.095269 B = 3113.421414 C = 3420.012938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.090 4.090 3 C -0.137 4.137 4 C 0.103 3.897 5 H 0.011 0.989 6 C 0.071 3.929 7 N -0.565 5.565 8 C 0.029 3.971 9 C 0.068 3.932 10 C 0.064 3.936 11 N -0.526 5.526 12 C 0.210 3.790 13 H 0.022 0.978 14 C -0.115 4.115 15 C -0.540 4.540 16 H 0.043 0.957 17 C 0.022 3.978 18 N -0.912 5.912 19 Si 0.941 3.059 20 H -0.276 1.276 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.043 0.957 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.043 0.957 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.086 0.914 32 H 0.030 0.970 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.016 0.984 38 H 0.066 0.934 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.054 0.946 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 8.806 -9.391 13.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.110 4.110 3 C -0.194 4.194 4 C -0.006 4.006 5 H 0.029 0.971 6 C -0.057 4.057 7 N -0.290 5.290 8 C -0.118 4.118 9 C -0.060 4.060 10 C -0.065 4.065 11 N -0.250 5.250 12 C 0.103 3.897 13 H 0.040 0.960 14 C -0.173 4.173 15 C -0.579 4.579 16 H 0.061 0.939 17 C -0.177 4.177 18 N -0.552 5.552 19 Si 0.768 3.232 20 H -0.201 1.201 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.062 0.938 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.034 0.966 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -5.114 8.711 -9.239 13.689 hybrid contribution 1.344 -0.695 0.507 1.596 sum -3.770 8.016 -8.732 12.438 Atomic orbital electron populations 1.21633 0.93990 1.01347 1.01199 1.21086 0.97057 0.96160 0.96656 1.21799 1.00335 0.94732 1.02551 1.21397 0.95574 0.89125 0.94525 0.97084 1.22250 0.98050 0.96998 0.88376 1.62099 1.60673 1.02820 1.03367 1.22369 0.98649 0.99310 0.91516 1.22120 0.97403 0.89011 0.97469 1.21949 0.97280 0.97185 0.90065 1.62646 1.57832 1.01809 1.02688 1.19095 0.91568 0.91137 0.87876 0.96001 1.21581 0.96557 0.98506 1.00657 1.21908 0.94756 1.36574 1.04669 0.93910 1.25541 1.01287 0.95521 0.95373 1.70013 1.36161 1.39704 1.09327 0.85774 0.82041 0.77735 0.77681 1.20109 1.20695 1.20578 0.93789 0.92811 0.91788 0.93851 0.91774 0.93871 0.90973 0.93727 0.89556 0.95170 0.90595 0.90732 0.89657 0.94310 0.96556 0.91600 0.95189 0.95738 0.92752 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.69 71.98 0.63 -3.28 16 2 C -0.09 -3.23 2.29 -10.80 -0.02 -3.25 16 3 C -0.14 -3.87 8.81 71.98 0.63 -3.24 16 4 C 0.10 3.99 1.53 44.92 0.07 4.06 16 5 H 0.01 0.52 7.09 -2.38 -0.02 0.50 16 6 C 0.07 2.19 4.18 86.31 0.36 2.56 16 7 N -0.56 -17.22 4.97 -921.95 -4.58 -21.80 16 8 C 0.03 0.64 9.63 127.69 1.23 1.87 16 9 C 0.07 2.15 5.62 86.31 0.48 2.64 16 10 C 0.06 2.57 4.96 86.31 0.43 3.00 16 11 N -0.53 -22.29 3.70 -849.78 -3.15 -25.44 16 12 C 0.21 10.56 2.06 44.17 0.09 10.66 16 13 H 0.02 1.22 5.83 -2.39 -0.01 1.21 16 14 C -0.11 -5.65 8.55 71.98 0.62 -5.04 16 15 C -0.54 -29.74 7.14 25.60 0.18 -29.55 16 16 H 0.04 2.45 5.80 -2.91 -0.02 2.43 16 17 C 0.02 1.24 5.30 84.65 0.45 1.69 16 18 N -0.91 -52.59 11.41 21.45 0.24 -52.34 16 19 Si 0.94 44.74 29.54 68.60 2.03 46.76 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 23 H 0.04 1.58 7.59 -2.39 -0.02 1.56 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.06 1.73 6.41 -2.39 -0.02 1.72 16 26 H 0.04 1.91 6.22 -2.38 -0.01 1.90 16 27 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.71 6.49 -2.39 -0.02 1.69 16 30 H 0.04 1.33 6.36 -2.38 -0.02 1.32 16 31 H 0.09 2.35 6.48 -2.39 -0.02 2.34 16 32 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 1.47 8.07 -2.39 -0.02 1.45 16 34 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.02 0.75 6.34 -2.38 -0.02 0.74 16 38 H 0.07 2.67 6.43 -2.39 -0.02 2.65 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.02 1.16 6.79 -2.39 -0.02 1.15 16 41 H 0.05 2.93 6.30 -2.39 -0.02 2.92 16 42 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -60.13 305.34 0.66 -59.47 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.97 Total: 11.23 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 5.15 Total: -17.88 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -7.48 Total: -99.58 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -60.13 0.66 -59.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.856 kcal (2) G-P(sol) polarization free energy of solvation -60.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds