Wall clock time and date at job start Mon Mar 30 2020 03:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53012 * 109.46638 * 2 1 4 4 C 1.52994 * 109.47081 * 119.99619 * 2 1 3 5 5 C 1.52998 * 109.47172 * 175.24743 * 4 2 1 6 6 H 1.08995 * 109.51032 * 186.59864 * 5 4 2 7 7 C 1.53049 * 109.48963 * 306.65911 * 5 4 2 8 8 N 1.46963 * 109.36683 * 178.36811 * 7 5 4 9 9 C 1.46963 * 110.87527 * 300.67710 * 8 7 5 10 10 C 1.53049 * 109.36399 * 59.32121 * 9 8 7 11 11 N 1.46955 * 109.36330 * 301.59646 * 10 9 8 12 12 C 1.46903 * 110.99993 * 183.19141 * 11 10 9 13 13 H 1.09002 * 109.47293 * 182.92872 * 12 11 10 14 14 C 1.52998 * 109.47085 * 62.92574 * 12 11 10 15 15 C 1.50705 * 109.47138 * 302.92801 * 12 11 10 16 16 H 1.08006 * 119.99704 * 5.35838 * 15 12 11 17 17 C 1.37868 * 120.00096 * 185.36371 * 15 12 11 18 18 N 1.31515 * 119.99812 * 196.00996 * 17 15 12 19 19 Si 1.86802 * 120.00119 * 16.01153 * 17 15 12 20 20 H 1.48495 * 109.47082 * 86.39847 * 19 17 15 21 21 H 1.48497 * 109.46929 * 326.39955 * 19 17 15 22 22 H 1.48503 * 109.47265 * 206.39721 * 19 17 15 23 23 H 1.08991 * 109.47360 * 299.99693 * 1 2 3 24 24 H 1.09003 * 109.47204 * 60.00297 * 1 2 3 25 25 H 1.09005 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47212 * 240.00761 * 2 1 3 27 27 H 1.09000 * 109.46875 * 67.41799 * 3 2 1 28 28 H 1.08994 * 109.46517 * 187.41935 * 3 2 1 29 29 H 1.08994 * 109.47143 * 307.42059 * 3 2 1 30 30 H 1.09004 * 109.46566 * 55.25488 * 4 2 1 31 31 H 1.08995 * 109.47895 * 295.25233 * 4 2 1 32 32 H 1.09000 * 109.49329 * 58.40172 * 7 5 4 33 33 H 1.08996 * 109.49231 * 298.33059 * 7 5 4 34 34 H 1.00900 * 111.00183 * 64.54047 * 8 7 5 35 35 H 1.08995 * 109.48714 * 299.35190 * 9 8 7 36 36 H 1.09005 * 109.48595 * 179.28532 * 9 8 7 37 37 H 1.09001 * 109.48546 * 181.63026 * 10 9 8 38 38 H 1.09003 * 109.49011 * 61.56416 * 10 9 8 39 39 H 1.08996 * 109.47364 * 305.41836 * 14 12 11 40 40 H 1.09000 * 109.47479 * 65.42062 * 14 12 11 41 41 H 1.09003 * 109.47012 * 185.41572 * 14 12 11 42 42 H 0.97008 * 119.99885 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5653 -0.8255 1.1909 6 1 3.9201 -1.4395 2.0187 7 6 3.9830 -1.4653 -0.1351 8 7 5.4497 -1.5285 -0.2051 9 6 6.0370 -0.1851 -0.1059 10 6 5.6193 0.4548 1.2202 11 7 4.1528 0.5179 1.2901 12 6 3.7129 1.1956 2.5170 13 1 2.6242 1.1826 2.5689 14 6 4.2057 2.6440 2.5043 15 6 4.2815 0.4820 3.7165 16 1 4.9759 -0.3339 3.5803 17 6 3.9152 0.8707 4.9875 18 7 4.6252 0.4822 6.0241 19 14 2.4105 1.9492 5.2372 20 1 1.2000 1.0948 5.3355 21 1 2.2697 2.8766 4.0860 22 1 2.5657 2.7335 6.4886 23 1 -0.3633 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.7889 1.9167 0.9489 28 1 3.1218 1.4455 -0.1327 29 1 1.5723 1.9933 -0.8161 30 1 1.6088 -1.7213 1.2927 31 1 1.7479 -0.1606 2.1372 32 1 3.6050 -0.8658 -0.9633 33 1 3.5724 -2.4730 -0.1981 34 1 5.8198 -2.1386 0.5083 35 1 5.6823 0.4289 -0.9337 36 1 7.1238 -0.2594 -0.1474 37 1 6.0301 1.4625 1.2830 38 1 5.9974 -0.1447 2.0483 39 1 5.2853 2.6592 2.3557 40 1 3.7196 3.1861 1.6931 41 1 3.9630 3.1186 3.4550 42 1 4.3673 0.7554 6.9185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:25 Heat of formation + Delta-G solvation = 8.673970 kcal Electronic energy + Delta-G solvation = -19511.166664 eV Core-core repulsion = 16912.154632 eV Total energy + Delta-G solvation = -2599.012032 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.49012 -35.55133 -34.81431 -32.11464 -30.87073 -29.40265 -26.64444 -26.22126 -25.19066 -24.17751 -21.80811 -20.66769 -19.89807 -18.47811 -16.59145 -15.90637 -14.91286 -14.67624 -14.49947 -14.20253 -13.86875 -13.64157 -13.23027 -12.67380 -12.28380 -12.23565 -12.01912 -11.70085 -11.65028 -11.34892 -11.32854 -10.94376 -10.90703 -10.81619 -10.61843 -10.37231 -10.20356 -10.11982 -9.84637 -9.68207 -9.48998 -9.28295 -8.48335 -7.92316 -7.03884 -6.17817 -4.12555 3.22991 3.32524 3.35398 4.35923 4.65847 4.82522 5.14348 5.25043 5.41884 5.44300 5.64117 5.74651 5.76708 5.79720 5.96275 6.02205 6.10078 6.11612 6.17974 6.24395 6.35870 6.36865 6.47971 6.57661 6.58831 6.63726 6.66346 6.72036 6.80522 6.84059 6.95038 7.17262 7.24104 7.30697 7.36238 7.57141 7.71571 8.07836 8.15267 8.41666 8.87836 9.49874 10.95227 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.011343 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.677123 B = 2467.950074 C = 3183.882656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.106 4.106 5 C 0.056 3.944 6 H 0.048 0.952 7 C 0.061 3.939 8 N -0.690 5.690 9 C 0.058 3.942 10 C 0.017 3.983 11 N -0.509 5.509 12 C 0.174 3.826 13 H 0.043 0.957 14 C -0.139 4.139 15 C -0.547 4.547 16 H 0.071 0.929 17 C 0.080 3.920 18 N -0.891 5.891 19 Si 0.860 3.140 20 H -0.279 1.279 21 H -0.252 1.252 22 H -0.289 1.289 23 H 0.049 0.951 24 H 0.047 0.953 25 H 0.046 0.954 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.100 0.900 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.066 0.934 34 H 0.335 0.665 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.029 0.971 41 H 0.046 0.954 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -0.636 -11.320 11.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.144 4.144 5 C -0.055 4.055 6 H 0.066 0.934 7 C -0.069 4.069 8 N -0.317 5.317 9 C -0.072 4.072 10 C -0.113 4.113 11 N -0.233 5.233 12 C 0.067 3.933 13 H 0.061 0.939 14 C -0.197 4.197 15 C -0.585 4.585 16 H 0.089 0.911 17 C -0.123 4.123 18 N -0.528 5.528 19 Si 0.687 3.313 20 H -0.205 1.205 21 H -0.176 1.176 22 H -0.216 1.216 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.151 0.849 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.048 0.952 41 H 0.065 0.935 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.474 -0.365 -12.230 12.719 hybrid contribution -0.701 0.284 2.302 2.423 sum -4.175 -0.081 -9.928 10.770 Atomic orbital electron populations 1.21892 0.96812 1.00741 1.01070 1.21061 0.93891 0.97685 0.97962 1.22236 1.04798 0.94210 0.99761 1.21656 0.94600 0.99581 0.98600 1.22126 0.94832 0.91579 0.96945 0.93436 1.22256 0.87634 0.99756 0.97264 1.60892 1.06207 1.11311 1.53337 1.22115 0.98250 0.89439 0.97374 1.22734 0.90465 1.01456 0.96610 1.62727 1.06188 1.16210 1.38204 1.19707 0.96049 0.90894 0.86668 0.93897 1.22172 1.00278 0.98012 0.99216 1.21513 1.28347 1.18663 0.89997 0.91090 1.24909 0.96093 0.95291 0.96047 1.70003 1.37441 1.46315 0.99073 0.87266 0.84412 0.81469 0.78148 1.20534 1.17624 1.21556 0.93136 0.93432 0.93468 0.91761 0.93337 0.88115 0.95629 0.92857 0.90913 0.90213 0.91574 0.84894 0.91012 0.91458 0.90865 0.93747 0.93590 0.95170 0.93482 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.19 37.16 0.34 -1.62 16 2 C -0.09 -1.30 2.55 -90.61 -0.23 -1.53 16 3 C -0.15 -2.44 7.73 37.16 0.29 -2.15 16 4 C -0.11 -1.79 4.49 -26.73 -0.12 -1.91 16 5 C 0.06 0.99 1.96 -67.66 -0.13 0.86 16 6 H 0.05 1.00 7.11 -51.93 -0.37 0.63 16 7 C 0.06 0.92 5.52 -3.76 -0.02 0.90 16 8 N -0.69 -10.38 6.91 -113.63 -0.79 -11.16 16 9 C 0.06 0.88 6.72 -3.76 -0.03 0.86 16 10 C 0.02 0.31 4.96 -3.77 -0.02 0.29 16 11 N -0.51 -9.55 1.49 -219.94 -0.33 -9.88 16 12 C 0.17 3.83 0.64 -68.86 -0.04 3.79 16 13 H 0.04 0.99 3.15 -51.93 -0.16 0.82 16 14 C -0.14 -2.95 8.51 37.16 0.32 -2.64 16 15 C -0.55 -14.41 7.57 -34.44 -0.26 -14.67 16 16 H 0.07 2.07 6.06 -52.48 -0.32 1.75 16 17 C 0.08 2.22 5.32 -17.82 -0.09 2.12 16 18 N -0.89 -26.56 13.96 55.43 0.77 -25.78 16 19 Si 0.86 20.80 25.84 -169.99 -4.39 16.40 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.25 -5.74 5.56 56.52 0.31 -5.43 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.90 6.01 -51.93 -0.31 0.59 16 27 H 0.05 0.86 6.54 -51.93 -0.34 0.52 16 28 H 0.10 1.72 5.71 -51.93 -0.30 1.43 16 29 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.43 5.87 -51.93 -0.30 1.12 16 32 H 0.08 1.20 6.13 -51.93 -0.32 0.88 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.33 5.00 8.89 -39.29 -0.35 4.66 16 35 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.35 6.12 -51.93 -0.32 1.04 16 38 H 0.04 0.94 6.33 -51.93 -0.33 0.61 16 39 H 0.05 0.96 6.15 -51.93 -0.32 0.64 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 1.05 5.03 -51.93 -0.26 0.79 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 293.80 15.07 4.43 4.43 Total: -1.00 -27.54 293.80 -7.33 -34.87 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -7.02 Total: 6.84 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 0.00 Total: -15.71 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.34 Total: -46.83 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -4.39 Total: 16.40 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.54 -7.33 -34.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.542 kcal (2) G-P(sol) polarization free energy of solvation -27.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds