Wall clock time and date at job start Mon Mar 30 2020 03:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53012 * 109.46638 * 2 1 4 4 C 1.52994 * 109.47081 * 119.99619 * 2 1 3 5 5 C 1.52998 * 109.47172 * 175.24743 * 4 2 1 6 6 H 1.08995 * 109.51032 * 186.59864 * 5 4 2 7 7 C 1.53049 * 109.48963 * 306.65911 * 5 4 2 8 8 N 1.46963 * 109.36683 * 178.36811 * 7 5 4 9 9 C 1.46963 * 110.87527 * 300.67710 * 8 7 5 10 10 C 1.53049 * 109.36399 * 59.32121 * 9 8 7 11 11 N 1.46955 * 109.36330 * 301.59646 * 10 9 8 12 12 C 1.46903 * 110.99993 * 183.19141 * 11 10 9 13 13 H 1.09002 * 109.47293 * 182.92872 * 12 11 10 14 14 C 1.52998 * 109.47085 * 62.92574 * 12 11 10 15 15 C 1.50705 * 109.47138 * 302.92801 * 12 11 10 16 16 H 1.08006 * 119.99704 * 5.35838 * 15 12 11 17 17 C 1.37868 * 120.00096 * 185.36371 * 15 12 11 18 18 N 1.31515 * 119.99812 * 196.00996 * 17 15 12 19 19 Si 1.86802 * 120.00119 * 16.01153 * 17 15 12 20 20 H 1.48495 * 109.47082 * 86.39847 * 19 17 15 21 21 H 1.48497 * 109.46929 * 326.39955 * 19 17 15 22 22 H 1.48503 * 109.47265 * 206.39721 * 19 17 15 23 23 H 1.08991 * 109.47360 * 299.99693 * 1 2 3 24 24 H 1.09003 * 109.47204 * 60.00297 * 1 2 3 25 25 H 1.09005 * 109.46766 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47212 * 240.00761 * 2 1 3 27 27 H 1.09000 * 109.46875 * 67.41799 * 3 2 1 28 28 H 1.08994 * 109.46517 * 187.41935 * 3 2 1 29 29 H 1.08994 * 109.47143 * 307.42059 * 3 2 1 30 30 H 1.09004 * 109.46566 * 55.25488 * 4 2 1 31 31 H 1.08995 * 109.47895 * 295.25233 * 4 2 1 32 32 H 1.09000 * 109.49329 * 58.40172 * 7 5 4 33 33 H 1.08996 * 109.49231 * 298.33059 * 7 5 4 34 34 H 1.00900 * 111.00183 * 64.54047 * 8 7 5 35 35 H 1.08995 * 109.48714 * 299.35190 * 9 8 7 36 36 H 1.09005 * 109.48595 * 179.28532 * 9 8 7 37 37 H 1.09001 * 109.48546 * 181.63026 * 10 9 8 38 38 H 1.09003 * 109.49011 * 61.56416 * 10 9 8 39 39 H 1.08996 * 109.47364 * 305.41836 * 14 12 11 40 40 H 1.09000 * 109.47479 * 65.42062 * 14 12 11 41 41 H 1.09003 * 109.47012 * 185.41572 * 14 12 11 42 42 H 0.97008 * 119.99885 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4427 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5653 -0.8255 1.1909 6 1 3.9201 -1.4395 2.0187 7 6 3.9830 -1.4653 -0.1351 8 7 5.4497 -1.5285 -0.2051 9 6 6.0370 -0.1851 -0.1059 10 6 5.6193 0.4548 1.2202 11 7 4.1528 0.5179 1.2901 12 6 3.7129 1.1956 2.5170 13 1 2.6242 1.1826 2.5689 14 6 4.2057 2.6440 2.5043 15 6 4.2815 0.4820 3.7165 16 1 4.9759 -0.3339 3.5803 17 6 3.9152 0.8707 4.9875 18 7 4.6252 0.4822 6.0241 19 14 2.4105 1.9492 5.2372 20 1 1.2000 1.0948 5.3355 21 1 2.2697 2.8766 4.0860 22 1 2.5657 2.7335 6.4886 23 1 -0.3633 0.5137 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.7889 1.9167 0.9489 28 1 3.1218 1.4455 -0.1327 29 1 1.5723 1.9933 -0.8161 30 1 1.6088 -1.7213 1.2927 31 1 1.7479 -0.1606 2.1372 32 1 3.6050 -0.8658 -0.9633 33 1 3.5724 -2.4730 -0.1981 34 1 5.8198 -2.1386 0.5083 35 1 5.6823 0.4289 -0.9337 36 1 7.1238 -0.2594 -0.1474 37 1 6.0301 1.4625 1.2830 38 1 5.9974 -0.1447 2.0483 39 1 5.2853 2.6592 2.3557 40 1 3.7196 3.1861 1.6931 41 1 3.9630 3.1186 3.4550 42 1 4.3673 0.7554 6.9185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:24 Heat of formation + Delta-G solvation = -9.581431 kcal Electronic energy + Delta-G solvation = -19511.958278 eV Core-core repulsion = 16912.154632 eV Total energy + Delta-G solvation = -2599.803646 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.95617 -36.79935 -36.46700 -34.10958 -32.22076 -31.05987 -27.92758 -27.51465 -27.09767 -25.70417 -23.15829 -22.14819 -21.43665 -20.04770 -18.47961 -17.43404 -16.48745 -16.12781 -15.98441 -15.81162 -15.32081 -15.02632 -14.71936 -14.31929 -14.08868 -13.71785 -13.41051 -13.22030 -12.89628 -12.84677 -12.74789 -12.67497 -12.47957 -12.19783 -12.00938 -11.91212 -11.85702 -11.50950 -11.38036 -11.28414 -11.13520 -10.97308 -10.52851 -9.26992 -8.70106 -8.34852 -6.31799 1.28316 1.32855 1.41000 2.30529 3.01629 3.20643 3.47987 3.96278 4.13836 4.25090 4.30577 4.39547 4.46908 4.49492 4.59398 4.66759 4.78140 4.86361 4.89641 4.94428 4.95916 4.97755 5.02045 5.05226 5.13752 5.24500 5.28378 5.32609 5.38018 5.44973 5.46954 5.53980 5.59975 5.74718 5.99664 6.08372 6.18498 6.37930 6.45854 6.55626 6.75194 7.34033 8.81930 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020129 B = 0.011343 C = 0.008792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.677123 B = 2467.950074 C = 3183.882656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.104 4.104 5 C 0.056 3.944 6 H 0.005 0.995 7 C 0.070 3.930 8 N -0.685 5.685 9 C 0.069 3.931 10 C 0.019 3.981 11 N -0.493 5.493 12 C 0.180 3.820 13 H 0.043 0.957 14 C -0.135 4.135 15 C -0.535 4.535 16 H 0.029 0.971 17 C 0.023 3.977 18 N -0.943 5.943 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.227 1.227 22 H -0.291 1.291 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.082 0.918 27 H 0.026 0.974 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.334 0.666 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.004 0.996 39 H 0.044 0.956 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 0.006 -14.145 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.143 4.143 5 C -0.054 4.054 6 H 0.023 0.977 7 C -0.060 4.060 8 N -0.312 5.312 9 C -0.061 4.061 10 C -0.111 4.111 11 N -0.217 5.217 12 C 0.071 3.929 13 H 0.060 0.940 14 C -0.193 4.193 15 C -0.574 4.574 16 H 0.047 0.953 17 C -0.176 4.176 18 N -0.583 5.583 19 Si 0.743 3.257 20 H -0.203 1.203 21 H -0.150 1.150 22 H -0.218 1.218 23 H 0.057 0.943 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.100 0.900 27 H 0.045 0.955 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.150 0.850 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.089 0.911 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.053 0.947 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.879 0.278 -15.090 15.862 hybrid contribution -0.189 -0.001 3.161 3.166 sum -5.068 0.276 -11.930 12.964 Atomic orbital electron populations 1.21860 0.95372 1.01665 1.01349 1.21028 0.95081 0.96777 0.97084 1.22156 1.04192 0.95004 0.99283 1.21642 0.93763 1.00254 0.98621 1.22203 0.95626 0.90337 0.97269 0.97728 1.22245 0.87661 1.00588 0.95464 1.60936 1.06200 1.11082 1.52978 1.22087 0.99389 0.89252 0.95368 1.22771 0.89958 1.00945 0.97381 1.62813 1.06472 1.16717 1.35679 1.19587 0.95730 0.91399 0.86142 0.93954 1.22084 1.00493 0.97235 0.99520 1.21778 1.26628 1.17223 0.91769 0.95279 1.25709 0.98810 0.97222 0.95830 1.70144 1.39597 1.48920 0.99592 0.86318 0.80537 0.80164 0.78707 1.20342 1.14956 1.21764 0.94302 0.91712 0.92304 0.89995 0.95474 0.89221 0.93726 0.91560 0.94094 0.88960 0.89882 0.84986 0.89670 0.89728 0.91078 0.97735 0.93700 0.92566 0.94708 0.92886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.19 71.98 0.66 -2.72 16 2 C -0.08 -2.16 2.55 -10.79 -0.03 -2.19 16 3 C -0.15 -4.32 7.73 71.99 0.56 -3.77 16 4 C -0.10 -3.41 4.49 30.59 0.14 -3.27 16 5 C 0.06 1.98 1.96 44.92 0.09 2.06 16 6 H 0.00 0.20 7.11 -2.39 -0.02 0.19 16 7 C 0.07 1.96 5.52 86.31 0.48 2.43 16 8 N -0.69 -19.29 6.91 -513.41 -3.55 -22.84 16 9 C 0.07 1.96 6.72 86.31 0.58 2.54 16 10 C 0.02 0.71 4.96 86.31 0.43 1.14 16 11 N -0.49 -18.31 1.49 -849.77 -1.26 -19.58 16 12 C 0.18 7.92 0.64 44.17 0.03 7.95 16 13 H 0.04 1.93 3.15 -2.39 -0.01 1.92 16 14 C -0.14 -5.62 8.51 71.98 0.61 -5.00 16 15 C -0.54 -29.33 7.57 25.60 0.19 -29.13 16 16 H 0.03 1.81 6.06 -2.91 -0.02 1.79 16 17 C 0.02 1.29 5.32 84.65 0.45 1.74 16 18 N -0.94 -58.58 13.96 21.44 0.30 -58.28 16 19 Si 0.92 43.47 25.84 68.60 1.77 45.24 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.23 -9.73 5.56 99.48 0.55 -9.17 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 26 H 0.08 1.93 6.01 -2.39 -0.01 1.92 16 27 H 0.03 0.88 6.54 -2.39 -0.02 0.87 16 28 H 0.09 2.80 5.71 -2.39 -0.01 2.78 16 29 H 0.04 1.12 8.13 -2.39 -0.02 1.10 16 30 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 31 H 0.04 1.59 5.87 -2.39 -0.01 1.58 16 32 H 0.09 2.41 6.13 -2.39 -0.01 2.40 16 33 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.33 9.72 8.89 -89.69 -0.80 8.93 16 35 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.07 2.61 6.12 -2.39 -0.01 2.59 16 38 H 0.00 0.20 6.33 -2.39 -0.02 0.18 16 39 H 0.04 1.84 6.15 -2.39 -0.01 1.82 16 40 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.03 1.51 5.03 -2.39 -0.01 1.49 16 42 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 Total: -1.00 -61.69 293.80 1.50 -60.19 By element: Atomic # 1 Polarization: 23.43 SS G_CDS: 0.05 Total: 23.48 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 4.19 Total: -28.21 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -4.51 Total: -100.70 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 1.77 Total: 45.24 kcal Total: -61.69 1.50 -60.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.605 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds