Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46806 * 2 1 4 4 C 1.52995 * 109.47223 * 119.99759 * 2 1 3 5 5 C 1.52998 * 109.47426 * 174.48724 * 4 2 1 6 6 H 1.08992 * 109.49157 * 185.89663 * 5 4 2 7 7 C 1.53056 * 109.48778 * 305.96196 * 5 4 2 8 8 N 1.46957 * 109.36482 * 178.36540 * 7 5 4 9 9 C 1.46957 * 110.87850 * 300.67966 * 8 7 5 10 10 C 1.53055 * 109.36592 * 59.32462 * 9 8 7 11 11 N 1.46955 * 109.48675 * 65.84747 * 5 4 2 12 12 C 1.46905 * 110.99829 * 56.85139 * 11 5 4 13 13 H 1.09001 * 109.46506 * 307.18908 * 12 11 5 14 14 C 1.52999 * 109.47326 * 67.18502 * 12 11 5 15 15 C 1.50700 * 109.47243 * 187.18929 * 12 11 5 16 16 H 1.08001 * 119.99559 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00025 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00125 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99860 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47094 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46947 * 120.00379 * 19 17 15 22 22 H 1.48502 * 109.46654 * 240.00098 * 19 17 15 23 23 H 1.08997 * 109.47364 * 300.00191 * 1 2 3 24 24 H 1.09001 * 109.46807 * 60.00223 * 1 2 3 25 25 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 240.00540 * 2 1 3 27 27 H 1.08994 * 109.47434 * 307.67978 * 3 2 1 28 28 H 1.09003 * 109.47117 * 67.67754 * 3 2 1 29 29 H 1.09003 * 109.46732 * 187.67368 * 3 2 1 30 30 H 1.09004 * 109.46645 * 54.48606 * 4 2 1 31 31 H 1.08999 * 109.47210 * 294.49274 * 4 2 1 32 32 H 1.09004 * 109.48705 * 58.39688 * 7 5 4 33 33 H 1.08998 * 109.48616 * 298.33506 * 7 5 4 34 34 H 1.00900 * 110.99821 * 176.80946 * 8 7 5 35 35 H 1.09007 * 109.48393 * 179.28674 * 9 8 7 36 36 H 1.08987 * 109.48965 * 299.35121 * 9 8 7 37 37 H 1.09002 * 109.49048 * 61.55595 * 10 9 8 38 38 H 1.08998 * 109.48728 * 181.63313 * 10 9 8 39 39 H 1.08994 * 109.47402 * 186.26883 * 14 12 11 40 40 H 1.08999 * 109.47230 * 306.27282 * 14 12 11 41 41 H 1.09004 * 109.46907 * 66.27199 * 14 12 11 42 42 H 0.96993 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5638 -0.8423 1.1819 6 1 3.9178 -1.4462 2.0173 7 6 3.9653 -1.5083 -0.1364 8 7 5.4306 -1.5878 -0.2156 9 6 6.0324 -0.2491 -0.1428 10 6 5.6310 0.4168 1.1755 11 7 4.1656 0.4963 1.2546 12 6 3.7417 1.1986 2.4733 13 1 2.6536 1.1906 2.5373 14 6 4.3298 0.4951 3.6981 15 6 4.2319 2.6230 2.4286 16 1 4.8010 2.9717 1.5795 17 6 3.9529 3.4811 3.4710 18 7 3.2595 3.0565 4.5047 19 14 4.5599 5.2469 3.4152 20 1 5.3100 5.4728 2.1536 21 1 3.3993 6.1713 3.4728 22 1 5.4526 5.5003 4.5746 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.5689 1.9945 -0.8133 28 1 1.7931 1.9152 0.9507 29 1 3.1213 1.4456 -0.1372 30 1 1.5983 -1.7164 1.2999 31 1 1.7595 -0.1535 2.1365 32 1 3.5873 -0.9186 -0.9716 33 1 3.5437 -2.5125 -0.1796 34 1 5.7217 -2.0702 -1.0527 35 1 7.1180 -0.3355 -0.1908 36 1 5.6781 0.3548 -0.9780 37 1 6.0088 -0.1730 2.0107 38 1 6.0525 1.4210 1.2187 39 1 3.9271 0.9466 4.6047 40 1 4.0666 -0.5623 3.6710 41 1 5.4148 0.5998 3.6912 42 1 3.0629 3.6603 5.2379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261057810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = 7.209322 kcal Electronic energy + Delta-G solvation = -19387.569702 eV Core-core repulsion = 16788.494158 eV Total energy + Delta-G solvation = -2599.075544 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.31397 -35.41549 -34.73315 -32.19195 -30.67726 -28.67062 -26.51974 -26.11011 -25.08374 -24.35127 -21.85742 -20.54352 -19.80825 -17.64046 -16.26011 -16.17667 -14.87634 -14.72154 -14.49092 -14.00822 -13.57404 -13.42073 -13.17270 -12.86191 -12.41129 -11.94633 -11.87620 -11.57721 -11.25048 -11.19919 -10.97583 -10.88818 -10.73590 -10.58687 -10.45233 -10.25146 -10.08161 -10.00531 -9.88357 -9.59189 -9.32844 -8.70756 -8.30713 -8.08476 -6.91145 -5.97750 -3.99846 3.31117 3.39538 3.43275 4.43671 4.58015 4.97108 5.27149 5.35977 5.50424 5.56481 5.58230 5.71631 5.81151 5.90508 5.98923 6.02837 6.15073 6.20611 6.29753 6.34228 6.47815 6.56333 6.68232 6.72506 6.77346 6.80584 6.88195 6.91569 6.93520 7.13485 7.30301 7.31384 7.59616 7.65174 7.69253 7.76920 7.89393 8.22460 8.43796 8.66297 9.06202 9.64695 11.09702 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.009596 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.759571 B = 2917.160038 C = 3516.297026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.151 4.151 4 C -0.110 4.110 5 C 0.084 3.916 6 H 0.040 0.960 7 C 0.063 3.937 8 N -0.694 5.694 9 C 0.058 3.942 10 C 0.060 3.940 11 N -0.515 5.515 12 C 0.207 3.793 13 H 0.052 0.948 14 C -0.169 4.169 15 C -0.494 4.494 16 H 0.061 0.939 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.891 3.109 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.287 1.287 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.042 0.958 26 H 0.057 0.943 27 H 0.019 0.981 28 H 0.062 0.938 29 H 0.101 0.899 30 H 0.050 0.950 31 H 0.077 0.923 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.331 0.669 35 H 0.066 0.934 36 H 0.032 0.968 37 H 0.032 0.968 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.007 0.993 41 H 0.029 0.971 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.252 -7.251 -8.287 11.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.208 4.208 4 C -0.148 4.148 5 C -0.026 4.026 6 H 0.058 0.942 7 C -0.066 4.066 8 N -0.324 5.324 9 C -0.071 4.071 10 C -0.069 4.069 11 N -0.240 5.240 12 C 0.101 3.899 13 H 0.070 0.930 14 C -0.229 4.229 15 C -0.532 4.532 16 H 0.079 0.921 17 C -0.142 4.142 18 N -0.533 5.533 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.213 1.213 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.120 0.880 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.082 0.918 34 H 0.148 0.852 35 H 0.084 0.916 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.026 0.974 41 H 0.048 0.952 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.411 -7.026 -7.843 10.538 hybrid contribution 0.344 0.815 -0.018 0.885 sum -0.067 -6.212 -7.861 10.019 Atomic orbital electron populations 1.21889 0.96912 1.00340 1.01288 1.21037 0.93778 0.98310 0.97222 1.22219 1.04781 0.93212 1.00613 1.21742 0.94327 0.99320 0.99444 1.21538 0.94155 0.91471 0.95405 0.94233 1.22126 0.87322 0.99074 0.98069 1.60512 1.08813 1.19314 1.43746 1.22085 0.97917 0.88580 0.98540 1.22036 0.90377 1.00081 0.94357 1.62722 1.06010 1.14133 1.41091 1.19439 0.96553 0.91872 0.82037 0.93033 1.22381 0.99694 0.96139 1.04647 1.21116 1.33794 0.94513 1.03811 0.92115 1.24897 0.95414 0.98352 0.95544 1.69906 1.39837 1.35199 1.08393 0.86546 0.78464 0.85207 0.77804 1.19827 1.21217 1.21342 0.92852 0.93523 0.93840 0.92465 0.96228 0.91943 0.88042 0.93169 0.90500 0.94078 0.91802 0.85228 0.91605 0.94954 0.94955 0.89784 0.89999 0.97418 0.95169 0.93210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.19 37.16 0.34 -1.77 16 2 C -0.09 -1.37 2.58 -90.62 -0.23 -1.60 16 3 C -0.15 -2.83 7.71 37.16 0.29 -2.55 16 4 C -0.11 -1.89 4.47 -26.73 -0.12 -2.00 16 5 C 0.08 1.51 1.93 -67.65 -0.13 1.38 16 6 H 0.04 0.79 6.53 -51.93 -0.34 0.45 16 7 C 0.06 0.97 5.55 -3.76 -0.02 0.95 16 8 N -0.69 -10.34 6.90 -113.63 -0.78 -11.13 16 9 C 0.06 0.92 6.72 -3.76 -0.03 0.90 16 10 C 0.06 1.16 4.83 -3.76 -0.02 1.14 16 11 N -0.51 -10.35 1.49 -219.94 -0.33 -10.67 16 12 C 0.21 4.90 1.03 -68.86 -0.07 4.83 16 13 H 0.05 1.33 4.41 -51.93 -0.23 1.10 16 14 C -0.17 -4.08 8.07 37.16 0.30 -3.78 16 15 C -0.49 -12.88 7.90 -34.44 -0.27 -13.15 16 16 H 0.06 1.60 6.93 -52.49 -0.36 1.24 16 17 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 18 N -0.89 -24.99 11.39 55.43 0.63 -24.36 16 19 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 23 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.87 5.98 -51.93 -0.31 0.56 16 27 H 0.02 0.33 8.13 -51.93 -0.42 -0.09 16 28 H 0.06 1.35 6.51 -51.93 -0.34 1.01 16 29 H 0.10 2.06 5.68 -51.93 -0.30 1.77 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.08 1.52 5.88 -51.93 -0.31 1.21 16 32 H 0.04 0.64 6.12 -51.93 -0.32 0.32 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.33 4.06 8.90 -39.29 -0.35 3.71 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.03 0.52 8.14 -51.94 -0.42 0.09 16 37 H 0.03 0.67 6.58 -51.93 -0.34 0.33 16 38 H 0.08 1.74 6.60 -51.93 -0.34 1.40 16 39 H 0.08 2.17 6.27 -51.93 -0.33 1.85 16 40 H 0.01 0.16 6.40 -51.93 -0.33 -0.17 16 41 H 0.03 0.72 6.79 -51.93 -0.35 0.37 16 42 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 298.95 15.07 4.51 4.51 Total: -1.00 -26.67 298.95 -8.12 -34.79 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.06 Total: 4.93 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -0.06 Total: -14.18 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.48 Total: -46.16 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.67 -8.12 -34.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.995 kcal (2) G-P(sol) polarization free energy of solvation -26.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds