Wall clock time and date at job start Mon Mar 30 2020 03:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46806 * 2 1 4 4 C 1.52995 * 109.47223 * 119.99759 * 2 1 3 5 5 C 1.52998 * 109.47426 * 174.48724 * 4 2 1 6 6 H 1.08992 * 109.49157 * 185.89663 * 5 4 2 7 7 C 1.53056 * 109.48778 * 305.96196 * 5 4 2 8 8 N 1.46957 * 109.36482 * 178.36540 * 7 5 4 9 9 C 1.46957 * 110.87850 * 300.67966 * 8 7 5 10 10 C 1.53055 * 109.36592 * 59.32462 * 9 8 7 11 11 N 1.46955 * 109.48675 * 65.84747 * 5 4 2 12 12 C 1.46905 * 110.99829 * 56.85139 * 11 5 4 13 13 H 1.09001 * 109.46506 * 307.18908 * 12 11 5 14 14 C 1.52999 * 109.47326 * 67.18502 * 12 11 5 15 15 C 1.50700 * 109.47243 * 187.18929 * 12 11 5 16 16 H 1.08001 * 119.99559 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00025 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00125 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99860 * 180.02562 * 17 15 12 20 20 H 1.48499 * 109.47094 * 0.02562 * 19 17 15 21 21 H 1.48494 * 109.46947 * 120.00379 * 19 17 15 22 22 H 1.48502 * 109.46654 * 240.00098 * 19 17 15 23 23 H 1.08997 * 109.47364 * 300.00191 * 1 2 3 24 24 H 1.09001 * 109.46807 * 60.00223 * 1 2 3 25 25 H 1.08997 * 109.46809 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47150 * 240.00540 * 2 1 3 27 27 H 1.08994 * 109.47434 * 307.67978 * 3 2 1 28 28 H 1.09003 * 109.47117 * 67.67754 * 3 2 1 29 29 H 1.09003 * 109.46732 * 187.67368 * 3 2 1 30 30 H 1.09004 * 109.46645 * 54.48606 * 4 2 1 31 31 H 1.08999 * 109.47210 * 294.49274 * 4 2 1 32 32 H 1.09004 * 109.48705 * 58.39688 * 7 5 4 33 33 H 1.08998 * 109.48616 * 298.33506 * 7 5 4 34 34 H 1.00900 * 110.99821 * 176.80946 * 8 7 5 35 35 H 1.09007 * 109.48393 * 179.28674 * 9 8 7 36 36 H 1.08987 * 109.48965 * 299.35121 * 9 8 7 37 37 H 1.09002 * 109.49048 * 61.55595 * 10 9 8 38 38 H 1.08998 * 109.48728 * 181.63313 * 10 9 8 39 39 H 1.08994 * 109.47402 * 186.26883 * 14 12 11 40 40 H 1.08999 * 109.47230 * 306.27282 * 14 12 11 41 41 H 1.09004 * 109.46907 * 66.27199 * 14 12 11 42 42 H 0.96993 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5638 -0.8423 1.1819 6 1 3.9178 -1.4462 2.0173 7 6 3.9653 -1.5083 -0.1364 8 7 5.4306 -1.5878 -0.2156 9 6 6.0324 -0.2491 -0.1428 10 6 5.6310 0.4168 1.1755 11 7 4.1656 0.4963 1.2546 12 6 3.7417 1.1986 2.4733 13 1 2.6536 1.1906 2.5373 14 6 4.3298 0.4951 3.6981 15 6 4.2319 2.6230 2.4286 16 1 4.8010 2.9717 1.5795 17 6 3.9529 3.4811 3.4710 18 7 3.2595 3.0565 4.5047 19 14 4.5599 5.2469 3.4152 20 1 5.3100 5.4728 2.1536 21 1 3.3993 6.1713 3.4728 22 1 5.4526 5.5003 4.5746 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5137 -0.8900 27 1 1.5689 1.9945 -0.8133 28 1 1.7931 1.9152 0.9507 29 1 3.1213 1.4456 -0.1372 30 1 1.5983 -1.7164 1.2999 31 1 1.7595 -0.1535 2.1365 32 1 3.5873 -0.9186 -0.9716 33 1 3.5437 -2.5125 -0.1796 34 1 5.7217 -2.0702 -1.0527 35 1 7.1180 -0.3355 -0.1908 36 1 5.6781 0.3548 -0.9780 37 1 6.0088 -0.1730 2.0107 38 1 6.0525 1.4210 1.2187 39 1 3.9271 0.9466 4.6047 40 1 4.0666 -0.5623 3.6710 41 1 5.4148 0.5998 3.6912 42 1 3.0629 3.6603 5.2379 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261057810.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:28 Heat of formation + Delta-G solvation = -8.919879 kcal Electronic energy + Delta-G solvation = -19388.269117 eV Core-core repulsion = 16788.494158 eV Total energy + Delta-G solvation = -2599.774959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.81711 -36.73867 -36.42125 -34.06497 -32.06795 -30.46308 -28.04303 -27.43761 -27.11241 -25.84276 -23.29648 -22.22663 -21.24710 -19.16855 -18.20072 -17.58731 -16.62286 -16.34025 -15.92544 -15.47171 -15.12597 -14.79123 -14.75683 -14.19111 -14.15137 -13.70544 -13.38946 -13.03486 -12.93766 -12.73829 -12.61953 -12.55634 -12.44879 -12.26537 -12.09484 -11.99931 -11.81478 -11.50425 -11.31547 -11.06635 -10.95720 -10.66839 -10.32187 -9.29792 -8.57597 -8.05814 -6.13253 1.40126 1.43104 1.53322 2.44934 3.24348 3.39735 3.40607 3.93151 4.17484 4.19645 4.31331 4.40955 4.50916 4.56330 4.61311 4.71479 4.78954 4.87555 4.93433 4.96397 4.99188 5.03374 5.08324 5.18401 5.20654 5.26187 5.32527 5.34118 5.42546 5.50422 5.62913 5.75530 5.80196 5.84891 6.07613 6.11021 6.31242 6.53448 6.67777 6.86298 7.01289 7.54768 9.00883 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.021637 B = 0.009596 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.759571 B = 2917.160038 C = 3516.297026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.079 4.079 3 C -0.141 4.141 4 C -0.107 4.107 5 C 0.081 3.919 6 H 0.019 0.981 7 C 0.071 3.929 8 N -0.697 5.697 9 C 0.069 3.931 10 C 0.059 3.941 11 N -0.511 5.511 12 C 0.217 3.783 13 H 0.029 0.971 14 C -0.154 4.154 15 C -0.497 4.497 16 H 0.054 0.946 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.949 3.051 20 H -0.267 1.267 21 H -0.285 1.285 22 H -0.286 1.286 23 H 0.035 0.965 24 H 0.058 0.942 25 H 0.065 0.935 26 H 0.079 0.921 27 H 0.030 0.970 28 H 0.022 0.978 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.353 0.647 35 H 0.087 0.913 36 H 0.035 0.965 37 H 0.015 0.985 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.022 0.978 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -8.392 -10.471 13.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.097 4.097 3 C -0.199 4.199 4 C -0.145 4.145 5 C -0.028 4.028 6 H 0.037 0.963 7 C -0.058 4.058 8 N -0.329 5.329 9 C -0.061 4.061 10 C -0.069 4.069 11 N -0.235 5.235 12 C 0.110 3.890 13 H 0.047 0.953 14 C -0.214 4.214 15 C -0.536 4.536 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.776 3.224 20 H -0.192 1.192 21 H -0.211 1.211 22 H -0.212 1.212 23 H 0.054 0.946 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.097 0.903 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.107 0.893 34 H 0.172 0.828 35 H 0.105 0.895 36 H 0.053 0.947 37 H 0.033 0.967 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.041 0.959 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.246 -8.184 -10.055 12.967 hybrid contribution 0.300 1.132 0.663 1.346 sum 0.054 -7.052 -9.392 11.745 Atomic orbital electron populations 1.21844 0.95369 1.01757 1.01077 1.20993 0.95063 0.96276 0.97346 1.22059 1.03855 0.95199 0.98754 1.21695 0.93912 1.00292 0.98560 1.21657 0.94613 0.89917 0.96627 0.96335 1.22056 0.87773 1.00054 0.95942 1.60428 1.08513 1.18694 1.45284 1.21936 0.99244 0.88887 0.95993 1.22027 0.89603 0.99157 0.96141 1.62672 1.06676 1.15520 1.38680 1.19126 0.95036 0.91421 0.83397 0.95316 1.22197 0.98855 0.96607 1.03714 1.21347 1.33128 0.95834 1.03316 0.92761 1.25597 0.95790 1.01889 0.95423 1.70032 1.41004 1.36275 1.08945 0.85632 0.77887 0.81001 0.77851 1.19166 1.21133 1.21203 0.94565 0.92286 0.91607 0.90319 0.95080 0.95864 0.89643 0.90583 0.93989 0.93616 0.89313 0.82775 0.89463 0.94711 0.96719 0.91802 0.92726 0.96311 0.95904 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.19 71.98 0.66 -3.15 16 2 C -0.08 -2.38 2.58 -10.79 -0.03 -2.41 16 3 C -0.14 -5.27 7.71 71.98 0.56 -4.71 16 4 C -0.11 -3.54 4.47 30.59 0.14 -3.40 16 5 C 0.08 2.84 1.93 44.92 0.09 2.92 16 6 H 0.02 0.74 6.53 -2.39 -0.02 0.72 16 7 C 0.07 1.95 5.55 86.31 0.48 2.43 16 8 N -0.70 -18.53 6.90 -513.42 -3.54 -22.08 16 9 C 0.07 2.03 6.72 86.31 0.58 2.61 16 10 C 0.06 2.29 4.83 86.31 0.42 2.71 16 11 N -0.51 -20.68 1.49 -849.74 -1.27 -21.95 16 12 C 0.22 10.65 1.03 44.17 0.05 10.70 16 13 H 0.03 1.57 4.41 -2.39 -0.01 1.56 16 14 C -0.15 -7.71 8.07 71.98 0.58 -7.13 16 15 C -0.50 -26.72 7.90 25.60 0.20 -26.52 16 16 H 0.05 2.93 6.93 -2.91 -0.02 2.91 16 17 C 0.01 0.60 5.30 84.65 0.45 1.05 16 18 N -0.92 -53.26 11.39 21.45 0.24 -53.01 16 19 Si 0.95 44.13 29.54 68.60 2.03 46.16 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 23 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 25 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 26 H 0.08 2.10 5.98 -2.39 -0.01 2.09 16 27 H 0.03 1.04 8.13 -2.39 -0.02 1.02 16 28 H 0.02 1.02 6.51 -2.39 -0.02 1.00 16 29 H 0.09 3.45 5.68 -2.39 -0.01 3.44 16 30 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.04 1.70 5.88 -2.39 -0.01 1.68 16 32 H 0.05 1.24 6.12 -2.38 -0.01 1.23 16 33 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.35 7.16 8.90 -89.69 -0.80 6.37 16 35 H 0.09 2.21 8.14 -2.38 -0.02 2.20 16 36 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.01 0.61 6.58 -2.39 -0.02 0.59 16 38 H 0.06 2.69 6.60 -2.39 -0.02 2.67 16 39 H 0.05 3.02 6.27 -2.39 -0.01 3.00 16 40 H 0.02 0.85 6.40 -2.39 -0.02 0.83 16 41 H 0.02 1.12 6.79 -2.39 -0.02 1.10 16 42 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 Total: -1.00 -58.89 298.95 1.82 -57.07 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.20 Total: 18.71 kcal Atomic # 6 Polarization: -29.07 SS G_CDS: 4.17 Total: -24.90 kcal Atomic # 7 Polarization: -92.47 SS G_CDS: -4.57 Total: -97.04 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -58.89 1.82 -57.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261057810.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.152 kcal (2) G-P(sol) polarization free energy of solvation -58.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds