Wall clock time and date at job start Mon Mar 30 2020 04:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.46851 * 2 1 4 4 C 1.46896 * 110.99982 * 194.01845 * 3 2 1 5 5 C 1.53000 * 109.47318 * 66.04805 * 4 3 2 6 6 H 1.09002 * 109.46272 * 295.02274 * 5 4 3 7 7 C 1.53034 * 109.46441 * 175.05407 * 5 4 3 8 8 C 1.53122 * 109.27884 * 180.80409 * 7 5 4 9 9 C 1.53118 * 109.16154 * 57.65527 * 8 7 5 10 10 C 1.53037 * 109.27648 * 302.34529 * 9 8 7 11 11 N 1.46848 * 109.46252 * 55.00048 * 5 4 3 12 12 C 1.46896 * 111.00109 * 70.06706 * 3 2 1 13 13 H 1.08994 * 109.47853 * 165.23636 * 12 3 2 14 14 C 1.53006 * 109.47267 * 45.23095 * 12 3 2 15 15 C 1.50705 * 109.46997 * 285.23565 * 12 3 2 16 16 H 1.07995 * 119.99996 * 2.75303 * 15 12 3 17 17 C 1.37878 * 119.99898 * 182.75917 * 15 12 3 18 18 N 1.31510 * 120.00240 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99924 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46879 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47316 * 119.99525 * 19 17 15 22 22 H 1.48493 * 109.47250 * 239.99937 * 19 17 15 23 23 H 1.08999 * 109.46747 * 288.50565 * 1 2 3 24 24 H 1.08995 * 109.47273 * 48.51016 * 1 2 3 25 25 H 1.09003 * 109.46672 * 168.51323 * 1 2 3 26 26 H 1.09004 * 109.46974 * 240.00448 * 2 1 3 27 27 H 1.08996 * 109.47422 * 120.00166 * 2 1 3 28 28 H 1.09003 * 109.47403 * 186.04508 * 4 3 2 29 29 H 1.09001 * 109.47085 * 306.04493 * 4 3 2 30 30 H 1.09007 * 109.50405 * 300.74330 * 7 5 4 31 31 H 1.08997 * 109.50415 * 60.86140 * 7 5 4 32 32 H 1.09000 * 109.52487 * 297.74880 * 8 7 5 33 33 H 1.09004 * 109.57467 * 177.58706 * 8 7 5 34 34 H 1.08991 * 109.50770 * 182.40710 * 9 8 7 35 35 H 1.09002 * 109.53863 * 62.30184 * 9 8 7 36 36 H 1.08997 * 109.46807 * 299.16378 * 10 9 8 37 37 H 1.08997 * 109.46611 * 179.19309 * 10 9 8 38 38 H 1.00900 * 111.00152 * 57.66188 * 11 5 4 39 39 H 1.09002 * 109.46851 * 60.00499 * 14 12 3 40 40 H 1.08997 * 109.46792 * 180.02562 * 14 12 3 41 41 H 1.08998 * 109.46832 * 300.00562 * 14 12 3 42 42 H 0.96998 * 119.99633 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4495 1.4379 -0.3322 5 6 3.6547 0.9793 -1.7774 6 1 3.3757 -0.0704 -1.8684 7 6 5.1257 1.1510 -2.1629 8 6 5.3224 0.7099 -3.6159 9 6 4.4019 1.5341 -4.5203 10 6 2.9519 1.3512 -4.0665 11 7 2.8156 1.7879 -2.6710 12 6 1.7543 2.0372 1.2892 13 1 2.3443 2.9506 1.3627 14 6 2.1367 1.0899 2.4283 15 6 0.2892 2.3763 1.3885 16 1 -0.3858 2.0921 0.5949 17 6 -0.1893 3.0494 2.4926 18 7 0.6326 3.3952 3.4592 19 14 -2.0051 3.4704 2.6153 20 1 -2.7109 2.9753 1.4061 21 1 -2.5818 2.8276 3.8234 22 1 -2.1663 4.9433 2.7136 23 1 -0.3633 0.3262 0.9745 24 1 -0.3633 0.6808 -0.7698 25 1 -0.3633 -1.0071 -0.2047 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8110 2.4602 -0.2207 29 1 4.0031 0.7815 0.3393 30 1 5.4093 2.1984 -2.0590 31 1 5.7471 0.5387 -1.5094 32 1 5.0760 -0.3475 -3.7121 33 1 6.3599 0.8703 -3.9091 34 1 4.5060 1.1954 -5.5511 35 1 4.6738 2.5876 -4.4542 36 1 2.6760 0.2998 -4.1466 37 1 2.2952 1.9480 -4.6994 38 1 3.0285 2.7696 -2.5769 39 1 3.1964 0.8446 2.3565 40 1 1.9394 1.5737 3.3849 41 1 1.5466 0.1765 2.3548 42 1 0.2958 3.8684 4.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300057035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:20 Heat of formation + Delta-G solvation = 1.986895 kcal Electronic energy + Delta-G solvation = -18627.329297 eV Core-core repulsion = 16028.027291 eV Total energy + Delta-G solvation = -2599.302005 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.99782 -37.05587 -32.91239 -31.64041 -31.35520 -29.70625 -28.17204 -25.24149 -24.64508 -23.04137 -22.14522 -20.97818 -20.11103 -18.50918 -16.33412 -15.38831 -15.16042 -14.97408 -14.51775 -14.17989 -14.08040 -13.67824 -12.99435 -12.74903 -12.55857 -11.95151 -11.88439 -11.61978 -11.49312 -11.28789 -11.08848 -11.03160 -10.86235 -10.67424 -10.56809 -10.35131 -10.31562 -10.22149 -10.12345 -9.71601 -9.17125 -8.63840 -8.22861 -7.83946 -6.87701 -5.89238 -3.87891 3.37203 3.45305 3.50517 4.48596 4.55254 4.76571 4.88177 5.04671 5.13174 5.37968 5.43465 5.47900 5.52485 5.63883 5.79595 5.95605 5.97925 6.00275 6.03915 6.12845 6.18732 6.19256 6.33336 6.43296 6.52796 6.54831 6.75918 6.81423 6.94567 7.07630 7.27306 7.39086 7.50605 7.61988 7.81590 7.84016 8.03119 8.35153 8.55446 8.78252 9.18454 9.74313 11.19077 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.006153 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.407334 B = 4549.299434 C = 4726.764790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.063 3.937 3 N -0.509 5.509 4 C 0.063 3.937 5 C 0.095 3.905 6 H 0.074 0.926 7 C -0.154 4.154 8 C -0.116 4.116 9 C -0.159 4.159 10 C 0.058 3.942 11 N -0.653 5.653 12 C 0.209 3.791 13 H 0.034 0.966 14 C -0.171 4.171 15 C -0.487 4.487 16 H 0.076 0.924 17 C 0.052 3.948 18 N -0.900 5.900 19 Si 0.890 3.110 20 H -0.272 1.272 21 H -0.288 1.288 22 H -0.287 1.287 23 H 0.082 0.918 24 H 0.057 0.943 25 H 0.023 0.977 26 H 0.045 0.955 27 H 0.025 0.975 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.340 0.660 39 H 0.003 0.997 40 H 0.081 0.919 41 H 0.036 0.964 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -5.194 -11.560 14.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 N -0.232 5.232 4 C -0.067 4.067 5 C -0.016 4.016 6 H 0.092 0.908 7 C -0.194 4.194 8 C -0.154 4.154 9 C -0.199 4.199 10 C -0.072 4.072 11 N -0.281 5.281 12 C 0.103 3.897 13 H 0.052 0.948 14 C -0.230 4.230 15 C -0.526 4.526 16 H 0.094 0.906 17 C -0.148 4.148 18 N -0.540 5.540 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.213 1.213 23 H 0.101 0.899 24 H 0.076 0.924 25 H 0.042 0.958 26 H 0.063 0.937 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.158 0.842 39 H 0.022 0.978 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.532 -5.207 -11.630 14.319 hybrid contribution 0.591 0.172 0.618 0.872 sum 7.123 -5.035 -11.011 14.047 Atomic orbital electron populations 1.22030 0.95454 0.98173 1.04374 1.21892 0.96432 0.90323 0.97897 1.62303 1.11667 1.15122 1.34154 1.22028 0.91791 0.99925 0.92936 1.21621 0.88553 0.98141 0.93254 0.90778 1.22309 0.99266 1.01601 0.96257 1.21520 0.98972 0.99716 0.95193 1.22312 0.98155 1.00154 0.99256 1.22020 0.93603 1.01269 0.90357 1.60441 1.56675 1.07389 1.03596 1.19329 0.96938 0.91937 0.81544 0.94837 1.22404 0.95307 1.00232 1.05025 1.21481 0.93134 1.34149 1.03788 0.90595 1.24960 0.97455 0.96228 0.96136 1.69928 1.34135 1.41014 1.08969 0.86553 0.85834 0.77924 0.77790 1.19670 1.21442 1.21327 0.89910 0.92355 0.95801 0.93660 0.95709 0.91864 0.95944 0.92039 0.91853 0.92212 0.92580 0.92163 0.92239 0.91539 0.91161 0.84203 0.97831 0.90052 0.94522 0.93387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.36 37.16 0.31 -2.59 16 2 C 0.06 1.24 5.07 -3.82 -0.02 1.22 16 3 N -0.51 -10.75 4.18 -228.04 -0.95 -11.71 16 4 C 0.06 1.12 4.34 -3.83 -0.02 1.10 16 5 C 0.10 1.40 2.24 -67.72 -0.15 1.25 16 6 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 7 C -0.15 -1.89 5.36 -26.65 -0.14 -2.03 16 8 C -0.12 -1.24 6.00 -26.61 -0.16 -1.40 16 9 C -0.16 -1.66 6.08 -26.65 -0.16 -1.82 16 10 C 0.06 0.70 6.55 -3.83 -0.03 0.67 16 11 N -0.65 -9.71 6.23 -106.76 -0.66 -10.37 16 12 C 0.21 5.20 2.22 -68.86 -0.15 5.05 16 13 H 0.03 0.93 7.75 -51.93 -0.40 0.53 16 14 C -0.17 -4.13 8.07 37.16 0.30 -3.83 16 15 C -0.49 -13.11 6.54 -34.44 -0.23 -13.34 16 16 H 0.08 2.05 5.25 -52.49 -0.28 1.78 16 17 C 0.05 1.43 5.31 -17.82 -0.09 1.34 16 18 N -0.90 -25.86 11.52 55.43 0.64 -25.22 16 19 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H 0.08 1.88 5.68 -51.93 -0.30 1.59 16 24 H 0.06 1.23 7.56 -51.93 -0.39 0.84 16 25 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.82 6.07 -51.93 -0.32 0.51 16 27 H 0.02 0.51 5.55 -51.93 -0.29 0.22 16 28 H 0.06 1.17 7.84 -51.93 -0.41 0.76 16 29 H 0.02 0.41 7.38 -51.93 -0.38 0.02 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.34 5.07 8.79 -39.29 -0.35 4.72 16 39 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 40 H 0.08 2.19 6.29 -51.93 -0.33 1.86 16 41 H 0.04 0.86 5.95 -51.93 -0.31 0.55 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -27.72 308.43 -9.29 -37.01 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.40 Total: 3.48 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -0.54 Total: -14.37 kcal Atomic # 7 Polarization: -46.32 SS G_CDS: -0.98 Total: -47.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.72 -9.29 -37.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.992 kcal (2) G-P(sol) polarization free energy of solvation -27.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds