Wall clock time and date at job start Mon Mar 30 2020 04:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46898 * 109.46851 * 2 1 4 4 C 1.46896 * 110.99982 * 194.01845 * 3 2 1 5 5 C 1.53000 * 109.47318 * 66.04805 * 4 3 2 6 6 H 1.09002 * 109.46272 * 295.02274 * 5 4 3 7 7 C 1.53034 * 109.46441 * 175.05407 * 5 4 3 8 8 C 1.53122 * 109.27884 * 180.80409 * 7 5 4 9 9 C 1.53118 * 109.16154 * 57.65527 * 8 7 5 10 10 C 1.53037 * 109.27648 * 302.34529 * 9 8 7 11 11 N 1.46848 * 109.46252 * 55.00048 * 5 4 3 12 12 C 1.46896 * 111.00109 * 70.06706 * 3 2 1 13 13 H 1.08994 * 109.47853 * 165.23636 * 12 3 2 14 14 C 1.53006 * 109.47267 * 45.23095 * 12 3 2 15 15 C 1.50705 * 109.46997 * 285.23565 * 12 3 2 16 16 H 1.07995 * 119.99996 * 2.75303 * 15 12 3 17 17 C 1.37878 * 119.99898 * 182.75917 * 15 12 3 18 18 N 1.31510 * 120.00240 * 359.97438 * 17 15 12 19 19 Si 1.86807 * 119.99924 * 179.97438 * 17 15 12 20 20 H 1.48506 * 109.46879 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47316 * 119.99525 * 19 17 15 22 22 H 1.48493 * 109.47250 * 239.99937 * 19 17 15 23 23 H 1.08999 * 109.46747 * 288.50565 * 1 2 3 24 24 H 1.08995 * 109.47273 * 48.51016 * 1 2 3 25 25 H 1.09003 * 109.46672 * 168.51323 * 1 2 3 26 26 H 1.09004 * 109.46974 * 240.00448 * 2 1 3 27 27 H 1.08996 * 109.47422 * 120.00166 * 2 1 3 28 28 H 1.09003 * 109.47403 * 186.04508 * 4 3 2 29 29 H 1.09001 * 109.47085 * 306.04493 * 4 3 2 30 30 H 1.09007 * 109.50405 * 300.74330 * 7 5 4 31 31 H 1.08997 * 109.50415 * 60.86140 * 7 5 4 32 32 H 1.09000 * 109.52487 * 297.74880 * 8 7 5 33 33 H 1.09004 * 109.57467 * 177.58706 * 8 7 5 34 34 H 1.08991 * 109.50770 * 182.40710 * 9 8 7 35 35 H 1.09002 * 109.53863 * 62.30184 * 9 8 7 36 36 H 1.08997 * 109.46807 * 299.16378 * 10 9 8 37 37 H 1.08997 * 109.46611 * 179.19309 * 10 9 8 38 38 H 1.00900 * 111.00152 * 57.66188 * 11 5 4 39 39 H 1.09002 * 109.46851 * 60.00499 * 14 12 3 40 40 H 1.08997 * 109.46792 * 180.02562 * 14 12 3 41 41 H 1.08998 * 109.46832 * 300.00562 * 14 12 3 42 42 H 0.96998 * 119.99633 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4495 1.4379 -0.3322 5 6 3.6547 0.9793 -1.7774 6 1 3.3757 -0.0704 -1.8684 7 6 5.1257 1.1510 -2.1629 8 6 5.3224 0.7099 -3.6159 9 6 4.4019 1.5341 -4.5203 10 6 2.9519 1.3512 -4.0665 11 7 2.8156 1.7879 -2.6710 12 6 1.7543 2.0372 1.2892 13 1 2.3443 2.9506 1.3627 14 6 2.1367 1.0899 2.4283 15 6 0.2892 2.3763 1.3885 16 1 -0.3858 2.0921 0.5949 17 6 -0.1893 3.0494 2.4926 18 7 0.6326 3.3952 3.4592 19 14 -2.0051 3.4704 2.6153 20 1 -2.7109 2.9753 1.4061 21 1 -2.5818 2.8276 3.8234 22 1 -2.1663 4.9433 2.7136 23 1 -0.3633 0.3262 0.9745 24 1 -0.3633 0.6808 -0.7698 25 1 -0.3633 -1.0071 -0.2047 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 3.8110 2.4602 -0.2207 29 1 4.0031 0.7815 0.3393 30 1 5.4093 2.1984 -2.0590 31 1 5.7471 0.5387 -1.5094 32 1 5.0760 -0.3475 -3.7121 33 1 6.3599 0.8703 -3.9091 34 1 4.5060 1.1954 -5.5511 35 1 4.6738 2.5876 -4.4542 36 1 2.6760 0.2998 -4.1466 37 1 2.2952 1.9480 -4.6994 38 1 3.0285 2.7696 -2.5769 39 1 3.1964 0.8446 2.3565 40 1 1.9394 1.5737 3.3849 41 1 1.5466 0.1765 2.3548 42 1 0.2958 3.8684 4.2361 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300057035.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:19 Heat of formation + Delta-G solvation = -15.818188 kcal Electronic energy + Delta-G solvation = -18628.101383 eV Core-core repulsion = 16028.027291 eV Total energy + Delta-G solvation = -2600.074092 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.22928 -38.60694 -34.77987 -32.98758 -32.40094 -31.46148 -29.78485 -27.30996 -26.01668 -24.05594 -23.85993 -22.28467 -21.15592 -20.26296 -18.33730 -17.02334 -16.41901 -16.17383 -16.14184 -15.47133 -15.38933 -14.91553 -14.62957 -14.38791 -13.74693 -13.50348 -13.41908 -13.12012 -12.97516 -12.82936 -12.76892 -12.53924 -12.34016 -12.16790 -12.12636 -12.01908 -11.77247 -11.66216 -11.51479 -11.24332 -10.89606 -10.66739 -10.33773 -8.92212 -8.59567 -8.00324 -6.04843 1.44030 1.46861 1.58217 2.50145 3.28959 3.33206 3.57977 3.90626 4.01414 4.11563 4.24181 4.34361 4.49730 4.56675 4.56727 4.66631 4.76777 4.82709 4.86984 4.90220 4.95263 4.98615 5.01300 5.11715 5.13928 5.17174 5.20993 5.24885 5.27136 5.45384 5.47411 5.55553 5.75215 5.87394 5.93603 6.34895 6.43041 6.67573 6.72221 6.94576 7.08245 7.61233 9.07012 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.034500 B = 0.006153 C = 0.005922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.407334 B = 4549.299434 C = 4726.764790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.065 3.935 3 N -0.515 5.515 4 C 0.063 3.937 5 C 0.106 3.894 6 H 0.072 0.928 7 C -0.149 4.149 8 C -0.113 4.113 9 C -0.152 4.152 10 C 0.059 3.941 11 N -0.674 5.674 12 C 0.214 3.786 13 H -0.002 1.002 14 C -0.156 4.156 15 C -0.491 4.491 16 H 0.073 0.927 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.950 3.050 20 H -0.266 1.266 21 H -0.285 1.285 22 H -0.287 1.287 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.020 0.980 28 H 0.051 0.949 29 H 0.022 0.978 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.336 0.664 39 H 0.018 0.982 40 H 0.052 0.948 41 H 0.040 0.960 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -6.233 -13.301 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 N -0.238 5.238 4 C -0.066 4.066 5 C -0.004 4.004 6 H 0.090 0.910 7 C -0.189 4.189 8 C -0.150 4.150 9 C -0.192 4.192 10 C -0.070 4.070 11 N -0.302 5.302 12 C 0.107 3.893 13 H 0.016 0.984 14 C -0.215 4.215 15 C -0.529 4.529 16 H 0.091 0.909 17 C -0.193 4.193 18 N -0.571 5.571 19 Si 0.777 3.223 20 H -0.190 1.190 21 H -0.211 1.211 22 H -0.213 1.213 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.154 0.846 39 H 0.037 0.963 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 6.741 -6.260 -13.395 16.249 hybrid contribution 0.555 0.477 1.123 1.341 sum 7.296 -5.783 -12.271 15.403 Atomic orbital electron populations 1.21894 0.95695 0.99515 1.02172 1.21919 0.96183 0.89481 0.98690 1.62220 1.13950 1.15949 1.31680 1.22094 0.89718 0.99433 0.95337 1.21430 0.90372 0.97578 0.91034 0.91021 1.22230 0.97251 1.01672 0.97722 1.21510 0.99912 0.99867 0.93756 1.22233 0.96643 1.00196 1.00106 1.22038 0.95061 1.01131 0.88819 1.60421 1.57268 1.07259 1.05283 1.19082 0.95428 0.91101 0.83687 0.98415 1.22200 0.96261 0.99828 1.03213 1.21736 0.94137 1.33595 1.03475 0.90880 1.25671 1.01197 0.96452 0.96023 1.70058 1.35751 1.41873 1.09448 0.85616 0.81399 0.77444 0.77847 1.19024 1.21148 1.21315 0.92758 0.93591 0.92834 0.91391 0.96159 0.93047 0.96015 0.92314 0.91384 0.91829 0.91117 0.90399 0.92309 0.91635 0.90690 0.84577 0.96348 0.92930 0.94093 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.32 8.36 71.98 0.60 -4.71 16 2 C 0.07 2.50 5.07 86.30 0.44 2.93 16 3 N -0.51 -21.66 4.18 -875.38 -3.66 -25.32 16 4 C 0.06 2.24 4.34 86.30 0.37 2.61 16 5 C 0.11 2.98 2.24 44.94 0.10 3.08 16 6 H 0.07 2.06 6.52 -2.39 -0.02 2.04 16 7 C -0.15 -3.34 5.36 30.65 0.16 -3.18 16 8 C -0.11 -2.07 6.00 30.67 0.18 -1.89 16 9 C -0.15 -2.74 6.08 30.65 0.19 -2.56 16 10 C 0.06 1.31 6.55 86.32 0.57 1.87 16 11 N -0.67 -19.18 6.23 -491.68 -3.06 -22.24 16 12 C 0.21 10.88 2.22 44.17 0.10 10.98 16 13 H 0.00 -0.12 7.75 -2.39 -0.02 -0.14 16 14 C -0.16 -7.63 8.07 71.98 0.58 -7.05 16 15 C -0.49 -26.78 6.54 25.60 0.17 -26.61 16 16 H 0.07 3.97 5.25 -2.91 -0.02 3.96 16 17 C 0.00 0.18 5.31 84.66 0.45 0.63 16 18 N -0.93 -54.57 11.52 21.45 0.25 -54.32 16 19 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 22 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 23 H 0.05 2.44 5.68 -2.39 -0.01 2.43 16 24 H 0.04 1.89 7.56 -2.39 -0.02 1.88 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 2.31 6.07 -2.39 -0.01 2.30 16 27 H 0.02 0.81 5.55 -2.39 -0.01 0.79 16 28 H 0.05 1.92 7.84 -2.39 -0.02 1.90 16 29 H 0.02 0.77 7.38 -2.39 -0.02 0.76 16 30 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.34 9.82 8.79 -89.69 -0.79 9.03 16 39 H 0.02 0.80 7.30 -2.39 -0.02 0.78 16 40 H 0.05 2.88 6.29 -2.39 -0.02 2.87 16 41 H 0.04 1.93 5.95 -2.39 -0.01 1.91 16 42 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 Total: -1.00 -59.28 308.43 -0.34 -59.62 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.19 Total: 19.49 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.91 Total: -23.89 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -6.47 Total: -101.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -59.28 -0.34 -59.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300057035.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.799 kcal (2) G-P(sol) polarization free energy of solvation -59.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds