Wall clock time and date at job start Mon Mar 30 2020 04:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47448 * 2 1 4 4 C 1.46902 * 110.99738 * 301.64278 * 3 2 1 5 5 C 1.52998 * 109.47180 * 292.33728 * 4 3 2 6 6 H 1.08994 * 109.50651 * 54.65005 * 5 4 3 7 7 C 1.53119 * 109.50345 * 174.77376 * 5 4 3 8 8 C 1.53114 * 109.16369 * 177.59578 * 7 5 4 9 9 C 1.53044 * 109.27540 * 302.34161 * 8 7 5 10 10 N 1.46845 * 109.52088 * 59.18304 * 9 8 7 11 11 C 1.46853 * 111.19534 * 298.25314 * 10 9 8 12 12 C 1.46896 * 110.99902 * 65.59375 * 3 2 1 13 13 H 1.08991 * 109.47125 * 296.04882 * 12 3 2 14 14 C 1.53000 * 109.47108 * 176.04376 * 12 3 2 15 15 C 1.50707 * 109.46775 * 56.04990 * 12 3 2 16 16 H 1.07992 * 120.00027 * 26.42990 * 15 12 3 17 17 C 1.37879 * 119.99663 * 206.43597 * 15 12 3 18 18 N 1.31510 * 120.00030 * 358.83203 * 17 15 12 19 19 Si 1.86797 * 119.99647 * 178.83676 * 17 15 12 20 20 H 1.48499 * 109.47186 * 269.99401 * 19 17 15 21 21 H 1.48499 * 109.47441 * 29.99795 * 19 17 15 22 22 H 1.48505 * 109.47023 * 149.99763 * 19 17 15 23 23 H 1.08994 * 109.47455 * 186.55894 * 1 2 3 24 24 H 1.09012 * 109.46534 * 306.55462 * 1 2 3 25 25 H 1.08999 * 109.47532 * 66.54655 * 1 2 3 26 26 H 1.09010 * 109.46765 * 240.00431 * 2 1 3 27 27 H 1.08996 * 109.47430 * 120.00369 * 2 1 3 28 28 H 1.09000 * 109.47345 * 52.33540 * 4 3 2 29 29 H 1.09000 * 109.46952 * 172.33984 * 4 3 2 30 30 H 1.09004 * 109.52135 * 297.49974 * 7 5 4 31 31 H 1.09002 * 109.52403 * 57.68758 * 7 5 4 32 32 H 1.08998 * 109.50711 * 182.40394 * 8 7 5 33 33 H 1.09001 * 109.53907 * 62.29908 * 8 7 5 34 34 H 1.08990 * 109.46388 * 299.16109 * 9 8 7 35 35 H 1.09000 * 109.46198 * 179.19136 * 9 8 7 36 36 H 1.00899 * 111.00479 * 62.35083 * 10 9 8 37 37 H 1.08996 * 109.46281 * 301.73128 * 11 10 9 38 38 H 1.09002 * 109.44873 * 181.75796 * 11 10 9 39 39 H 1.08996 * 109.46851 * 67.55296 * 14 12 3 40 40 H 1.09002 * 109.46774 * 187.55143 * 14 12 3 41 41 H 1.08997 * 109.47183 * 307.55479 * 14 12 3 42 42 H 0.96999 * 120.00238 * 356.01601 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5169 2.1211 -1.1676 5 6 2.1454 1.5498 -2.4401 6 1 1.9628 0.4763 -2.4859 7 6 1.5253 2.2274 -3.6652 8 6 2.2017 1.6938 -4.9310 9 6 3.7079 1.9513 -4.8458 10 7 4.2538 1.2820 -3.6582 11 6 3.6532 1.8116 -2.4272 12 6 1.6610 2.0702 1.2488 13 1 0.5762 2.1450 1.3235 14 6 2.2707 3.4735 1.2539 15 6 2.1925 1.2874 2.4219 16 1 3.0596 0.6551 2.3007 17 6 1.5716 1.3784 3.6496 18 7 0.5296 2.1660 3.8027 19 14 2.2107 0.3831 5.0954 20 1 1.5304 -0.9365 5.1272 21 1 3.6748 0.1819 4.9493 22 1 1.9350 1.1128 6.3591 23 1 -0.3634 -1.0209 0.1174 24 1 -0.3633 0.6122 0.8256 25 1 -0.3634 0.4090 -0.9427 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.4328 2.0208 -1.2212 29 1 1.7801 3.1747 -1.0738 30 1 0.4583 2.0075 -3.7021 31 1 1.6739 3.3053 -3.5996 32 1 1.7942 2.2036 -5.8040 33 1 2.0200 0.6225 -5.0174 34 1 3.8895 3.0236 -4.7741 35 1 4.1944 1.5597 -5.7391 36 1 4.1323 0.2822 -3.7187 37 1 3.8350 2.8846 -2.3668 38 1 4.1001 1.3183 -1.5640 39 1 1.7884 4.0819 0.4889 40 1 2.1195 3.9317 2.2313 41 1 3.3384 3.4065 1.0453 42 1 0.2331 2.7263 3.0686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300063281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:09 Heat of formation + Delta-G solvation = -15.129378 kcal Electronic energy + Delta-G solvation = -18663.954356 eV Core-core repulsion = 16063.910134 eV Total energy + Delta-G solvation = -2600.044223 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.17480 -37.21155 -33.36534 -31.89166 -31.10523 -30.33146 -27.47538 -25.58722 -24.09173 -23.45127 -22.31965 -21.38104 -20.04581 -18.79717 -16.45994 -15.79792 -15.65655 -14.72295 -14.57495 -14.43507 -13.93301 -13.69892 -13.48206 -12.74732 -12.63688 -12.16275 -12.05218 -11.82176 -11.50517 -11.29485 -11.21752 -11.15485 -11.06966 -10.85723 -10.68270 -10.53955 -10.22308 -10.20394 -10.15001 -10.05849 -9.53652 -8.48824 -8.35604 -8.20623 -7.16013 -6.32732 -4.03872 3.43890 3.47662 3.63327 4.42928 4.51828 4.71349 4.87216 4.97385 5.14917 5.23023 5.41277 5.48169 5.56842 5.64985 5.74538 5.83754 5.88706 5.95604 5.98340 6.04868 6.09351 6.15019 6.18816 6.31100 6.43907 6.47447 6.56149 6.63178 6.70913 6.73918 6.92039 7.04677 7.16345 7.18533 7.48048 7.48933 7.95549 8.09160 8.43972 8.63745 8.90688 9.67860 11.04053 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.005945 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.667430 B = 4708.849170 C = 4771.561452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.064 3.936 3 N -0.524 5.524 4 C 0.053 3.947 5 C -0.116 4.116 6 H 0.066 0.934 7 C -0.115 4.115 8 C -0.155 4.155 9 C 0.056 3.944 10 N -0.689 5.689 11 C 0.071 3.929 12 C 0.192 3.808 13 H 0.006 0.994 14 C -0.130 4.130 15 C -0.577 4.577 16 H 0.056 0.944 17 C 0.019 3.981 18 N -0.916 5.916 19 Si 1.069 2.931 20 H -0.289 1.289 21 H -0.288 1.288 22 H -0.286 1.286 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.086 0.914 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.337 0.663 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.015 0.985 40 H 0.048 0.952 41 H 0.045 0.955 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.256 -1.493 -14.296 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.064 4.064 3 N -0.248 5.248 4 C -0.076 4.076 5 C -0.136 4.136 6 H 0.085 0.915 7 C -0.153 4.153 8 C -0.195 4.195 9 C -0.074 4.074 10 N -0.317 5.317 11 C -0.058 4.058 12 C 0.086 3.914 13 H 0.024 0.976 14 C -0.189 4.189 15 C -0.616 4.616 16 H 0.074 0.926 17 C -0.185 4.185 18 N -0.553 5.553 19 Si 0.898 3.102 20 H -0.216 1.216 21 H -0.214 1.214 22 H -0.212 1.212 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.084 0.916 38 H 0.109 0.891 39 H 0.034 0.966 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.077 -1.442 -12.676 13.124 hybrid contribution -1.749 0.066 -1.638 2.397 sum 1.328 -1.375 -14.315 14.442 Atomic orbital electron populations 1.22331 0.99740 1.01166 1.00979 1.21925 0.91775 0.91489 1.01219 1.62316 1.58463 1.01626 1.02401 1.22124 0.96285 0.98514 0.90707 1.21841 0.97589 1.00071 0.94148 0.91522 1.21598 0.99285 1.00219 0.94223 1.22246 0.98000 1.01057 0.98153 1.22001 0.91975 0.99931 0.93453 1.60734 1.59534 1.09087 1.02307 1.21992 0.91294 1.00593 0.91897 1.19440 0.94033 0.91058 0.86883 0.97634 1.21930 1.00180 0.97848 0.98911 1.21855 1.15915 1.29285 0.94565 0.92615 1.25763 0.94572 0.97884 1.00318 1.70768 1.24180 1.24582 1.35734 0.83543 0.75405 0.75669 0.75626 1.21614 1.21385 1.21212 0.93550 0.91753 0.94191 0.93405 0.89536 0.95722 0.91368 0.92474 0.92075 0.91969 0.92304 0.91219 0.91355 0.84636 0.91636 0.89068 0.96626 0.93264 0.93562 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 9.16 37.16 0.34 -3.14 16 2 C 0.06 1.26 5.58 -3.82 -0.02 1.24 16 3 N -0.52 -10.75 4.05 -228.04 -0.92 -11.68 16 4 C 0.05 0.93 3.93 -3.82 -0.02 0.91 16 5 C -0.12 -1.67 2.29 -90.54 -0.21 -1.88 16 6 H 0.07 1.00 6.42 -51.93 -0.33 0.67 16 7 C -0.12 -1.43 5.29 -26.61 -0.14 -1.57 16 8 C -0.16 -1.63 6.08 -26.65 -0.16 -1.80 16 9 C 0.06 0.61 6.55 -3.83 -0.03 0.59 16 10 N -0.69 -8.74 6.87 -113.81 -0.78 -9.52 16 11 C 0.07 1.04 5.72 -3.83 -0.02 1.02 16 12 C 0.19 4.65 1.36 -68.86 -0.09 4.55 16 13 H 0.01 0.16 5.18 -51.93 -0.27 -0.11 16 14 C -0.13 -2.98 8.68 37.16 0.32 -2.66 16 15 C -0.58 -15.54 6.95 -34.44 -0.24 -15.78 16 16 H 0.06 1.54 7.57 -52.49 -0.40 1.14 16 17 C 0.02 0.51 5.46 -17.82 -0.10 0.42 16 18 N -0.92 -27.01 13.60 55.43 0.75 -26.25 16 19 Si 1.07 24.95 29.90 -169.99 -5.08 19.87 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.06 1.44 6.34 -51.92 -0.33 1.11 16 25 H 0.04 0.69 6.59 -51.93 -0.34 0.35 16 26 H 0.05 0.83 6.50 -51.92 -0.34 0.49 16 27 H 0.09 1.90 6.62 -51.93 -0.34 1.56 16 28 H 0.02 0.45 6.02 -51.93 -0.31 0.14 16 29 H 0.07 1.23 5.93 -51.93 -0.31 0.93 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.34 3.97 8.86 -39.29 -0.35 3.62 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.53 7.79 -51.93 -0.40 1.12 16 39 H 0.01 0.31 6.58 -51.93 -0.34 -0.03 16 40 H 0.05 1.20 8.09 -51.93 -0.42 0.78 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.27 7.91 6.65 -40.82 -0.27 7.64 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -27.91 311.18 -9.06 -36.98 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -7.36 Total: 4.01 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.36 Total: -18.09 kcal Atomic # 7 Polarization: -46.50 SS G_CDS: -0.95 Total: -47.45 kcal Atomic # 14 Polarization: 24.95 SS G_CDS: -5.08 Total: 19.87 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.91 -9.06 -36.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300063281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.846 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds