Wall clock time and date at job start Mon Mar 30 2020 04:11:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46904 * 109.47448 * 2 1 4 4 C 1.46902 * 110.99738 * 301.64278 * 3 2 1 5 5 C 1.52998 * 109.47180 * 292.33728 * 4 3 2 6 6 H 1.08994 * 109.50651 * 54.65005 * 5 4 3 7 7 C 1.53119 * 109.50345 * 174.77376 * 5 4 3 8 8 C 1.53114 * 109.16369 * 177.59578 * 7 5 4 9 9 C 1.53044 * 109.27540 * 302.34161 * 8 7 5 10 10 N 1.46845 * 109.52088 * 59.18304 * 9 8 7 11 11 C 1.46853 * 111.19534 * 298.25314 * 10 9 8 12 12 C 1.46896 * 110.99902 * 65.59375 * 3 2 1 13 13 H 1.08991 * 109.47125 * 296.04882 * 12 3 2 14 14 C 1.53000 * 109.47108 * 176.04376 * 12 3 2 15 15 C 1.50707 * 109.46775 * 56.04990 * 12 3 2 16 16 H 1.07992 * 120.00027 * 26.42990 * 15 12 3 17 17 C 1.37879 * 119.99663 * 206.43597 * 15 12 3 18 18 N 1.31510 * 120.00030 * 358.83203 * 17 15 12 19 19 Si 1.86797 * 119.99647 * 178.83676 * 17 15 12 20 20 H 1.48499 * 109.47186 * 269.99401 * 19 17 15 21 21 H 1.48499 * 109.47441 * 29.99795 * 19 17 15 22 22 H 1.48505 * 109.47023 * 149.99763 * 19 17 15 23 23 H 1.08994 * 109.47455 * 186.55894 * 1 2 3 24 24 H 1.09012 * 109.46534 * 306.55462 * 1 2 3 25 25 H 1.08999 * 109.47532 * 66.54655 * 1 2 3 26 26 H 1.09010 * 109.46765 * 240.00431 * 2 1 3 27 27 H 1.08996 * 109.47430 * 120.00369 * 2 1 3 28 28 H 1.09000 * 109.47345 * 52.33540 * 4 3 2 29 29 H 1.09000 * 109.46952 * 172.33984 * 4 3 2 30 30 H 1.09004 * 109.52135 * 297.49974 * 7 5 4 31 31 H 1.09002 * 109.52403 * 57.68758 * 7 5 4 32 32 H 1.08998 * 109.50711 * 182.40394 * 8 7 5 33 33 H 1.09001 * 109.53907 * 62.29908 * 8 7 5 34 34 H 1.08990 * 109.46388 * 299.16109 * 9 8 7 35 35 H 1.09000 * 109.46198 * 179.19136 * 9 8 7 36 36 H 1.00899 * 111.00479 * 62.35083 * 10 9 8 37 37 H 1.08996 * 109.46281 * 301.73128 * 11 10 9 38 38 H 1.09002 * 109.44873 * 181.75796 * 11 10 9 39 39 H 1.08996 * 109.46851 * 67.55296 * 14 12 3 40 40 H 1.09002 * 109.46774 * 187.55143 * 14 12 3 41 41 H 1.08997 * 109.47183 * 307.55479 * 14 12 3 42 42 H 0.96999 * 120.00238 * 356.01601 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5169 2.1211 -1.1676 5 6 2.1454 1.5498 -2.4401 6 1 1.9628 0.4763 -2.4859 7 6 1.5253 2.2274 -3.6652 8 6 2.2017 1.6938 -4.9310 9 6 3.7079 1.9513 -4.8458 10 7 4.2538 1.2820 -3.6582 11 6 3.6532 1.8116 -2.4272 12 6 1.6610 2.0702 1.2488 13 1 0.5762 2.1450 1.3235 14 6 2.2707 3.4735 1.2539 15 6 2.1925 1.2874 2.4219 16 1 3.0596 0.6551 2.3007 17 6 1.5716 1.3784 3.6496 18 7 0.5296 2.1660 3.8027 19 14 2.2107 0.3831 5.0954 20 1 1.5304 -0.9365 5.1272 21 1 3.6748 0.1819 4.9493 22 1 1.9350 1.1128 6.3591 23 1 -0.3634 -1.0209 0.1174 24 1 -0.3633 0.6122 0.8256 25 1 -0.3634 0.4090 -0.9427 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 0.4328 2.0208 -1.2212 29 1 1.7801 3.1747 -1.0738 30 1 0.4583 2.0075 -3.7021 31 1 1.6739 3.3053 -3.5996 32 1 1.7942 2.2036 -5.8040 33 1 2.0200 0.6225 -5.0174 34 1 3.8895 3.0236 -4.7741 35 1 4.1944 1.5597 -5.7391 36 1 4.1323 0.2822 -3.7187 37 1 3.8350 2.8846 -2.3668 38 1 4.1001 1.3183 -1.5640 39 1 1.7884 4.0819 0.4889 40 1 2.1195 3.9317 2.2313 41 1 3.3384 3.4065 1.0453 42 1 0.2331 2.7263 3.0686 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300063281.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:08 Heat of formation + Delta-G solvation = -33.473841 kcal Electronic energy + Delta-G solvation = -18664.749832 eV Core-core repulsion = 16063.910134 eV Total energy + Delta-G solvation = -2600.839698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.44187 -38.68595 -35.26068 -33.12378 -32.26759 -32.08564 -29.07756 -27.34757 -25.81998 -24.51296 -23.87832 -22.75129 -21.26668 -20.38988 -18.46341 -17.24591 -16.81069 -16.20820 -15.97707 -15.68878 -15.51273 -15.32213 -14.87299 -14.08350 -13.98066 -13.72863 -13.29002 -13.18454 -13.11807 -13.02372 -12.90193 -12.66459 -12.51119 -12.18029 -12.16890 -12.10672 -11.93354 -11.86130 -11.62193 -11.28235 -11.08007 -10.53891 -10.41499 -9.25580 -8.87008 -8.52369 -6.25029 1.53897 1.61758 1.79270 2.58320 3.16963 3.34613 3.45440 3.77262 3.98925 4.04266 4.13266 4.26190 4.35210 4.40769 4.52100 4.54971 4.59590 4.64408 4.68606 4.74260 4.79976 4.81047 4.88534 4.95865 5.02983 5.05991 5.08533 5.15694 5.20815 5.33077 5.34809 5.37024 5.47709 5.58172 6.02821 6.09763 6.15318 6.53701 6.54847 6.58429 6.83106 7.54304 8.82844 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.005945 C = 0.005867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.667430 B = 4708.849170 C = 4771.561452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.065 3.935 3 N -0.526 5.526 4 C 0.056 3.944 5 C -0.104 4.104 6 H 0.066 0.934 7 C -0.113 4.113 8 C -0.147 4.147 9 C 0.056 3.944 10 N -0.693 5.693 11 C 0.081 3.919 12 C 0.195 3.805 13 H -0.023 1.023 14 C -0.119 4.119 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.029 4.029 18 N -0.942 5.942 19 Si 1.111 2.889 20 H -0.277 1.277 21 H -0.272 1.272 22 H -0.288 1.288 23 H 0.064 0.936 24 H 0.023 0.977 25 H 0.057 0.943 26 H 0.077 0.923 27 H 0.059 0.941 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.343 0.657 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.025 0.975 41 H 0.048 0.952 42 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.830 -2.335 -16.306 16.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.063 4.063 3 N -0.249 5.249 4 C -0.073 4.073 5 C -0.124 4.124 6 H 0.085 0.915 7 C -0.151 4.151 8 C -0.187 4.187 9 C -0.074 4.074 10 N -0.321 5.321 11 C -0.049 4.049 12 C 0.088 3.912 13 H -0.006 1.006 14 C -0.177 4.177 15 C -0.616 4.616 16 H 0.064 0.936 17 C -0.227 4.227 18 N -0.581 5.581 19 Si 0.935 3.065 20 H -0.203 1.203 21 H -0.198 1.198 22 H -0.214 1.214 23 H 0.083 0.917 24 H 0.042 0.958 25 H 0.076 0.924 26 H 0.096 0.904 27 H 0.077 0.923 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.161 0.839 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.659 -2.292 -14.723 15.343 hybrid contribution -1.910 0.334 -1.107 2.233 sum 1.749 -1.957 -15.830 16.046 Atomic orbital electron populations 1.22208 0.99170 1.01563 1.00180 1.21915 0.92183 0.90894 1.01277 1.62251 1.58688 1.02094 1.01878 1.22170 0.96129 0.98067 0.90897 1.21733 0.97418 0.99955 0.93343 0.91525 1.21581 0.99471 1.00007 0.94057 1.22187 0.97387 1.01480 0.97598 1.22080 0.92413 0.99702 0.93183 1.60698 1.59595 1.09688 1.02168 1.21760 0.91167 0.99782 0.92184 1.19265 0.92149 0.91750 0.88068 1.00554 1.21755 1.00366 0.97319 0.98281 1.22079 1.15203 1.28738 0.95603 0.93585 1.27033 0.94278 0.98276 1.03139 1.70883 1.25756 1.26009 1.35409 0.82987 0.75862 0.74900 0.72779 1.20270 1.19751 1.21370 0.91739 0.95783 0.92410 0.90449 0.92252 0.96260 0.91989 0.92223 0.92204 0.90126 0.91783 0.91562 0.89391 0.83892 0.92503 0.91531 0.94447 0.95616 0.93269 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.47 9.16 71.98 0.66 -5.81 16 2 C 0.07 2.53 5.58 86.30 0.48 3.02 16 3 N -0.53 -21.55 4.05 -875.37 -3.55 -25.09 16 4 C 0.06 1.93 3.93 86.30 0.34 2.27 16 5 C -0.10 -2.80 2.29 -10.74 -0.02 -2.83 16 6 H 0.07 1.82 6.42 -2.39 -0.02 1.80 16 7 C -0.11 -2.50 5.29 30.67 0.16 -2.34 16 8 C -0.15 -2.58 6.08 30.65 0.19 -2.39 16 9 C 0.06 1.03 6.55 86.33 0.57 1.60 16 10 N -0.69 -15.97 6.87 -514.00 -3.53 -19.50 16 11 C 0.08 2.25 5.72 86.32 0.49 2.74 16 12 C 0.19 9.65 1.36 44.17 0.06 9.71 16 13 H -0.02 -1.28 5.18 -2.39 -0.01 -1.29 16 14 C -0.12 -5.53 8.68 71.98 0.62 -4.90 16 15 C -0.58 -31.70 6.95 25.60 0.18 -31.52 16 16 H 0.05 2.57 7.57 -2.91 -0.02 2.55 16 17 C -0.03 -1.66 5.46 84.66 0.46 -1.20 16 18 N -0.94 -57.12 13.60 21.45 0.29 -56.83 16 19 Si 1.11 50.53 29.90 68.60 2.05 52.58 16 20 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 21 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 23 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.02 1.08 6.34 -2.38 -0.02 1.06 16 25 H 0.06 1.93 6.59 -2.39 -0.02 1.91 16 26 H 0.08 2.54 6.50 -2.38 -0.02 2.53 16 27 H 0.06 2.62 6.62 -2.39 -0.02 2.60 16 28 H 0.02 0.69 6.02 -2.39 -0.01 0.67 16 29 H 0.06 2.20 5.93 -2.39 -0.01 2.18 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.34 7.19 8.86 -89.69 -0.79 6.39 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.18 7.79 -2.39 -0.02 2.16 16 39 H 0.04 1.53 6.58 -2.39 -0.02 1.52 16 40 H 0.02 1.27 8.09 -2.39 -0.02 1.25 16 41 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.26 15.73 6.65 -92.71 -0.62 15.11 16 Total: -1.00 -60.95 311.18 -0.20 -61.16 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: 0.34 Total: 19.33 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 4.19 Total: -31.65 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -6.78 Total: -101.42 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Total: -60.95 -0.20 -61.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300063281.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.682 kcal (2) G-P(sol) polarization free energy of solvation -60.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds