Wall clock time and date at job start Mon Mar 30 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47251 * 2 1 4 4 C 1.46903 * 110.99849 * 75.78867 * 3 2 1 5 5 C 1.52992 * 109.47022 * 212.09976 * 4 3 2 6 6 H 1.08998 * 109.53805 * 305.06689 * 5 4 3 7 7 C 1.53102 * 109.49185 * 184.97420 * 5 4 3 8 8 C 1.53119 * 109.15685 * 182.40273 * 7 5 4 9 9 C 1.53030 * 109.28335 * 57.65129 * 8 7 5 10 10 N 1.46850 * 109.52379 * 300.82273 * 9 8 7 11 11 C 1.46856 * 111.19815 * 61.74104 * 10 9 8 12 12 C 1.46899 * 110.99843 * 199.74083 * 3 2 1 13 13 H 1.09003 * 109.46928 * 300.91930 * 12 3 2 14 14 C 1.53002 * 109.46995 * 180.91959 * 12 3 2 15 15 C 1.50697 * 109.47038 * 60.92162 * 12 3 2 16 16 H 1.08000 * 120.00308 * 359.97438 * 15 12 3 17 17 C 1.37879 * 119.99975 * 179.97438 * 15 12 3 18 18 N 1.31518 * 119.99742 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00071 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46886 * 60.00184 * 19 17 15 21 21 H 1.48506 * 109.46921 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47065 * 300.00014 * 19 17 15 23 23 H 1.09001 * 109.47205 * 63.37647 * 1 2 3 24 24 H 1.09002 * 109.47413 * 183.38293 * 1 2 3 25 25 H 1.09000 * 109.47094 * 303.38007 * 1 2 3 26 26 H 1.08996 * 109.46786 * 239.99992 * 2 1 3 27 27 H 1.09006 * 109.46785 * 120.00121 * 2 1 3 28 28 H 1.09001 * 109.47484 * 92.09811 * 4 3 2 29 29 H 1.09005 * 109.47242 * 332.10112 * 4 3 2 30 30 H 1.08995 * 109.52406 * 62.49416 * 7 5 4 31 31 H 1.09000 * 109.57245 * 302.33426 * 7 5 4 32 32 H 1.09001 * 109.50108 * 297.71058 * 8 7 5 33 33 H 1.09000 * 109.50346 * 177.59780 * 8 7 5 34 34 H 1.08996 * 109.46909 * 180.80653 * 9 8 7 35 35 H 1.09004 * 109.46242 * 60.83346 * 9 8 7 36 36 H 1.00900 * 111.00536 * 185.83764 * 10 9 8 37 37 H 1.08996 * 109.46319 * 58.27116 * 11 10 9 38 38 H 1.08992 * 109.46021 * 178.25383 * 11 10 9 39 39 H 1.08996 * 109.47392 * 188.34381 * 14 12 3 40 40 H 1.08999 * 109.47026 * 308.34871 * 14 12 3 41 41 H 1.09003 * 109.46862 * 68.34154 * 14 12 3 42 42 H 0.97003 * 120.00147 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8777 1.9935 1.3295 5 6 1.6096 3.4922 1.1784 6 1 2.3966 3.9443 0.5749 7 6 1.5848 4.1487 2.5612 8 6 1.2566 5.6362 2.4055 9 6 -0.0859 5.7849 1.6862 10 7 -0.0106 5.1412 0.3684 11 6 0.2567 3.7027 0.4945 12 6 3.4122 1.4510 -0.4632 13 1 4.0409 0.8439 0.1881 14 6 3.8932 2.9030 -0.4277 15 6 3.4976 0.9279 -1.8739 16 1 2.6066 0.5808 -2.3761 17 6 4.7132 0.8926 -2.5237 18 7 5.7980 1.3158 -1.9124 19 14 4.8192 0.2435 -4.2721 20 1 3.9620 1.0698 -5.1596 21 1 6.2267 0.3115 -4.7408 22 1 4.3531 -1.1660 -4.3060 23 1 -0.3634 0.4605 -0.9187 24 1 -0.3634 -1.0259 0.0606 25 1 -0.3633 0.5654 0.8581 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7960 1.8442 1.8974 29 1 1.0451 1.5267 1.8558 30 1 2.5606 4.0385 3.0343 31 1 0.8245 3.6707 3.1789 32 1 2.0382 6.1220 1.8213 33 1 1.1955 6.1004 3.3898 34 1 -0.3157 6.8429 1.5609 35 1 -0.8692 5.3107 2.2776 36 1 -0.8515 5.3074 -0.1639 37 1 -0.5281 3.2385 1.0916 38 1 0.2760 3.2488 -0.4962 39 1 4.8692 2.9743 -0.9077 40 1 3.1805 3.5349 -0.9577 41 1 3.9724 3.2342 0.6078 42 1 6.6533 1.2906 -2.3693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300063282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:10 Heat of formation + Delta-G solvation = -3.455569 kcal Electronic energy + Delta-G solvation = -18731.418226 eV Core-core repulsion = 16131.880218 eV Total energy + Delta-G solvation = -2599.538008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.82499 -36.76792 -33.04065 -32.27923 -31.11662 -30.22366 -27.63126 -25.67895 -24.26402 -23.38860 -21.59044 -20.90351 -19.26678 -19.15833 -16.41207 -16.14662 -15.19027 -14.47993 -14.27590 -14.06090 -13.95235 -13.56894 -13.16845 -12.84894 -12.59400 -12.42798 -12.18904 -11.85051 -11.44748 -11.11804 -11.07599 -10.89815 -10.75234 -10.69628 -10.59661 -10.18590 -10.07187 -9.90397 -9.83914 -9.75178 -9.35201 -8.82670 -8.31194 -8.15600 -7.08944 -5.95002 -3.99971 3.35251 3.39647 3.42655 4.44905 4.47794 4.88747 5.13742 5.15618 5.34050 5.39692 5.46983 5.66210 5.76561 5.78840 5.88255 5.95583 6.01561 6.08449 6.09857 6.19365 6.26011 6.29836 6.37620 6.42939 6.50617 6.73740 6.81020 6.83485 6.94808 6.98570 7.15145 7.23813 7.35661 7.58219 7.65105 7.86156 7.88607 8.32699 8.43088 8.67986 9.07113 9.64740 11.10693 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.006954 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.264717 B = 4025.596179 C = 4393.276718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.054 3.946 3 N -0.530 5.530 4 C 0.063 3.937 5 C -0.093 4.093 6 H 0.106 0.894 7 C -0.117 4.117 8 C -0.115 4.115 9 C 0.060 3.940 10 N -0.691 5.691 11 C 0.077 3.923 12 C 0.214 3.786 13 H -0.005 1.005 14 C -0.135 4.135 15 C -0.500 4.500 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.279 1.279 23 H 0.056 0.944 24 H 0.043 0.957 25 H 0.042 0.958 26 H 0.087 0.913 27 H 0.014 0.986 28 H 0.030 0.970 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.022 0.978 36 H 0.336 0.664 37 H 0.014 0.986 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.011 0.989 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 4.629 7.363 13.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 N -0.255 5.255 4 C -0.067 4.067 5 C -0.112 4.112 6 H 0.124 0.876 7 C -0.155 4.155 8 C -0.153 4.153 9 C -0.070 4.070 10 N -0.322 5.322 11 C -0.052 4.052 12 C 0.108 3.892 13 H 0.012 0.988 14 C -0.193 4.193 15 C -0.538 4.538 16 H 0.080 0.920 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.075 0.925 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.105 0.895 27 H 0.032 0.968 28 H 0.048 0.952 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.153 0.847 37 H 0.032 0.968 38 H 0.108 0.892 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.030 0.970 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.478 5.068 6.903 12.773 hybrid contribution -0.253 -1.135 0.044 1.163 sum -9.731 3.934 6.946 12.586 Atomic orbital electron populations 1.21795 0.96933 0.99735 1.01449 1.21972 0.93891 0.90738 1.00818 1.62121 1.25046 1.16224 1.22105 1.22020 0.98753 0.94331 0.91566 1.21603 0.98928 0.95408 0.95267 0.87649 1.21623 1.00883 0.95181 0.97848 1.21549 0.97561 0.96967 0.99240 1.21870 0.96575 0.98417 0.90113 1.60262 1.42010 1.13585 1.16320 1.21864 0.95567 0.86081 1.01664 1.19255 0.81466 0.93556 0.94892 0.98760 1.22004 1.03057 0.97239 0.96970 1.21118 0.93564 1.40780 0.98379 0.92030 1.24926 0.95765 0.95646 0.97946 1.69886 0.98830 1.47330 1.37248 0.86619 0.76821 0.79331 0.84956 1.20253 1.21445 1.20442 0.92474 0.93747 0.93850 0.89497 0.96788 0.95195 0.93211 0.92230 0.93153 0.91151 0.92346 0.91578 0.96023 0.84665 0.96807 0.89183 0.89750 0.94256 0.97034 0.93017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.04 37.16 0.37 -1.88 16 2 C 0.05 1.06 5.42 -3.82 -0.02 1.04 16 3 N -0.53 -11.16 3.70 -228.04 -0.84 -12.01 16 4 C 0.06 1.15 3.79 -3.83 -0.01 1.14 16 5 C -0.09 -1.58 2.00 -90.55 -0.18 -1.76 16 6 H 0.11 2.08 4.15 -51.93 -0.22 1.86 16 7 C -0.12 -1.68 5.28 -26.62 -0.14 -1.82 16 8 C -0.12 -1.48 6.09 -26.65 -0.16 -1.64 16 9 C 0.06 0.74 6.55 -3.84 -0.03 0.71 16 10 N -0.69 -9.83 6.85 -113.81 -0.78 -10.61 16 11 C 0.08 1.22 5.71 -3.83 -0.02 1.20 16 12 C 0.21 5.38 1.87 -68.86 -0.13 5.26 16 13 H -0.01 -0.14 8.14 -51.93 -0.42 -0.57 16 14 C -0.13 -3.30 7.37 37.16 0.27 -3.02 16 15 C -0.50 -13.62 7.65 -34.44 -0.26 -13.88 16 16 H 0.06 1.68 6.95 -52.49 -0.36 1.31 16 17 C 0.06 1.60 5.28 -17.82 -0.09 1.51 16 18 N -0.89 -25.60 11.29 55.43 0.63 -24.98 16 19 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.04 0.65 6.82 -51.93 -0.35 0.30 16 26 H 0.09 1.87 6.17 -51.93 -0.32 1.55 16 27 H 0.01 0.27 8.00 -51.93 -0.42 -0.15 16 28 H 0.03 0.59 7.54 -51.93 -0.39 0.19 16 29 H 0.05 0.84 6.47 -51.93 -0.34 0.50 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.34 4.12 8.90 -39.29 -0.35 3.77 16 37 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.09 1.62 7.78 -51.93 -0.40 1.22 16 39 H 0.08 2.29 5.89 -51.93 -0.31 1.99 16 40 H 0.04 0.95 7.15 -51.93 -0.37 0.58 16 41 H 0.01 0.25 6.13 -51.93 -0.32 -0.07 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -27.91 311.43 -9.24 -37.15 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.51 Total: 2.49 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: -0.41 Total: -13.16 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -1.00 Total: -47.59 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.91 -9.24 -37.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300063282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.694 kcal (2) G-P(sol) polarization free energy of solvation -27.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds