Wall clock time and date at job start Mon Mar 30 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47251 * 2 1 4 4 C 1.46903 * 110.99849 * 75.78867 * 3 2 1 5 5 C 1.52992 * 109.47022 * 212.09976 * 4 3 2 6 6 H 1.08998 * 109.53805 * 305.06689 * 5 4 3 7 7 C 1.53102 * 109.49185 * 184.97420 * 5 4 3 8 8 C 1.53119 * 109.15685 * 182.40273 * 7 5 4 9 9 C 1.53030 * 109.28335 * 57.65129 * 8 7 5 10 10 N 1.46850 * 109.52379 * 300.82273 * 9 8 7 11 11 C 1.46856 * 111.19815 * 61.74104 * 10 9 8 12 12 C 1.46899 * 110.99843 * 199.74083 * 3 2 1 13 13 H 1.09003 * 109.46928 * 300.91930 * 12 3 2 14 14 C 1.53002 * 109.46995 * 180.91959 * 12 3 2 15 15 C 1.50697 * 109.47038 * 60.92162 * 12 3 2 16 16 H 1.08000 * 120.00308 * 359.97438 * 15 12 3 17 17 C 1.37879 * 119.99975 * 179.97438 * 15 12 3 18 18 N 1.31518 * 119.99742 * 359.97438 * 17 15 12 19 19 Si 1.86802 * 120.00071 * 179.97438 * 17 15 12 20 20 H 1.48498 * 109.46886 * 60.00184 * 19 17 15 21 21 H 1.48506 * 109.46921 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47065 * 300.00014 * 19 17 15 23 23 H 1.09001 * 109.47205 * 63.37647 * 1 2 3 24 24 H 1.09002 * 109.47413 * 183.38293 * 1 2 3 25 25 H 1.09000 * 109.47094 * 303.38007 * 1 2 3 26 26 H 1.08996 * 109.46786 * 239.99992 * 2 1 3 27 27 H 1.09006 * 109.46785 * 120.00121 * 2 1 3 28 28 H 1.09001 * 109.47484 * 92.09811 * 4 3 2 29 29 H 1.09005 * 109.47242 * 332.10112 * 4 3 2 30 30 H 1.08995 * 109.52406 * 62.49416 * 7 5 4 31 31 H 1.09000 * 109.57245 * 302.33426 * 7 5 4 32 32 H 1.09001 * 109.50108 * 297.71058 * 8 7 5 33 33 H 1.09000 * 109.50346 * 177.59780 * 8 7 5 34 34 H 1.08996 * 109.46909 * 180.80653 * 9 8 7 35 35 H 1.09004 * 109.46242 * 60.83346 * 9 8 7 36 36 H 1.00900 * 111.00536 * 185.83764 * 10 9 8 37 37 H 1.08996 * 109.46319 * 58.27116 * 11 10 9 38 38 H 1.08992 * 109.46021 * 178.25383 * 11 10 9 39 39 H 1.08996 * 109.47392 * 188.34381 * 14 12 3 40 40 H 1.08999 * 109.47026 * 308.34871 * 14 12 3 41 41 H 1.09003 * 109.46862 * 68.34154 * 14 12 3 42 42 H 0.97003 * 120.00147 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8777 1.9935 1.3295 5 6 1.6096 3.4922 1.1784 6 1 2.3966 3.9443 0.5749 7 6 1.5848 4.1487 2.5612 8 6 1.2566 5.6362 2.4055 9 6 -0.0859 5.7849 1.6862 10 7 -0.0106 5.1412 0.3684 11 6 0.2567 3.7027 0.4945 12 6 3.4122 1.4510 -0.4632 13 1 4.0409 0.8439 0.1881 14 6 3.8932 2.9030 -0.4277 15 6 3.4976 0.9279 -1.8739 16 1 2.6066 0.5808 -2.3761 17 6 4.7132 0.8926 -2.5237 18 7 5.7980 1.3158 -1.9124 19 14 4.8192 0.2435 -4.2721 20 1 3.9620 1.0698 -5.1596 21 1 6.2267 0.3115 -4.7408 22 1 4.3531 -1.1660 -4.3060 23 1 -0.3634 0.4605 -0.9187 24 1 -0.3634 -1.0259 0.0606 25 1 -0.3633 0.5654 0.8581 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 2.7960 1.8442 1.8974 29 1 1.0451 1.5267 1.8558 30 1 2.5606 4.0385 3.0343 31 1 0.8245 3.6707 3.1789 32 1 2.0382 6.1220 1.8213 33 1 1.1955 6.1004 3.3898 34 1 -0.3157 6.8429 1.5609 35 1 -0.8692 5.3107 2.2776 36 1 -0.8515 5.3074 -0.1639 37 1 -0.5281 3.2385 1.0916 38 1 0.2760 3.2488 -0.4962 39 1 4.8692 2.9743 -0.9077 40 1 3.1805 3.5349 -0.9577 41 1 3.9724 3.2342 0.6078 42 1 6.6533 1.2906 -2.3693 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300063282.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:10 Heat of formation + Delta-G solvation = -21.590422 kcal Electronic energy + Delta-G solvation = -18732.204612 eV Core-core repulsion = 16131.880218 eV Total energy + Delta-G solvation = -2600.324395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.20013 -38.26857 -35.03013 -33.56542 -32.40073 -31.89987 -29.28138 -27.52897 -25.91638 -24.55148 -22.94113 -22.53631 -20.98527 -20.42401 -18.37973 -17.44731 -16.94700 -16.09397 -15.71785 -15.57292 -15.30167 -14.84256 -14.63265 -14.49875 -13.93712 -13.87433 -13.66262 -13.27861 -12.96513 -12.80535 -12.68077 -12.56842 -12.49992 -12.35374 -12.00122 -11.86133 -11.77197 -11.51357 -11.26699 -11.08458 -11.05383 -10.77345 -10.37813 -9.24502 -8.85068 -8.07499 -6.19836 1.42695 1.44891 1.52099 2.43934 3.18839 3.34935 3.41854 4.01018 4.07398 4.11311 4.25734 4.32830 4.51686 4.57503 4.64958 4.69893 4.76229 4.78024 4.81857 4.84859 4.95289 5.01012 5.03714 5.07134 5.13908 5.16331 5.16964 5.31909 5.35549 5.40809 5.53110 5.57822 5.62275 5.75660 5.92132 6.24094 6.34093 6.50269 6.64343 6.81638 6.96537 7.49108 8.97180 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026884 B = 0.006954 C = 0.006372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.264717 B = 4025.596179 C = 4393.276718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.050 3.950 3 N -0.531 5.531 4 C 0.065 3.935 5 C -0.090 4.090 6 H 0.074 0.926 7 C -0.114 4.114 8 C -0.114 4.114 9 C 0.060 3.940 10 N -0.705 5.705 11 C 0.088 3.912 12 C 0.221 3.779 13 H -0.045 1.045 14 C -0.114 4.114 15 C -0.514 4.514 16 H 0.058 0.942 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.958 3.042 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.271 1.271 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.014 0.986 28 H 0.013 0.987 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.348 0.652 37 H 0.026 0.974 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.035 0.965 41 H 0.025 0.975 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.060 5.027 7.907 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.064 4.064 5 C -0.110 4.110 6 H 0.092 0.908 7 C -0.152 4.152 8 C -0.152 4.152 9 C -0.069 4.069 10 N -0.337 5.337 11 C -0.042 4.042 12 C 0.114 3.886 13 H -0.028 1.028 14 C -0.172 4.172 15 C -0.552 4.552 16 H 0.076 0.924 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.783 3.217 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.033 0.967 28 H 0.032 0.968 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.052 0.948 36 H 0.166 0.834 37 H 0.044 0.956 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.504 5.470 7.452 14.758 hybrid contribution 0.361 -1.259 -0.071 1.311 sum -11.143 4.212 7.381 14.014 Atomic orbital electron populations 1.21670 0.93554 1.01527 1.01775 1.22035 0.96568 0.89615 0.99552 1.62117 1.22065 1.17381 1.23937 1.22089 0.98756 0.95529 0.89996 1.21480 0.98667 0.94066 0.96756 0.90817 1.21592 1.01288 0.96264 0.96052 1.21565 0.97444 0.95677 1.00525 1.21943 0.96435 0.99423 0.89101 1.60201 1.43093 1.12482 1.17901 1.21617 0.95084 0.87323 1.00137 1.19027 0.83249 0.92863 0.93500 1.02772 1.21755 1.01104 0.96947 0.97371 1.21385 0.93566 1.40864 0.99377 0.92398 1.25708 0.95442 0.95883 1.01837 1.70024 0.99214 1.48168 1.38759 0.85616 0.76861 0.78963 0.80213 1.19771 1.21081 1.19643 0.92931 0.91352 0.92527 0.92135 0.96743 0.96837 0.91007 0.92665 0.91614 0.92790 0.89765 0.89732 0.94789 0.83351 0.95553 0.91790 0.92671 0.94582 0.95656 0.93051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 10.04 71.98 0.72 -3.08 16 2 C 0.05 1.97 5.42 86.30 0.47 2.43 16 3 N -0.53 -22.60 3.70 -875.37 -3.24 -25.84 16 4 C 0.07 2.36 3.79 86.30 0.33 2.69 16 5 C -0.09 -3.00 2.00 -10.75 -0.02 -3.02 16 6 H 0.07 2.93 4.15 -2.39 -0.01 2.92 16 7 C -0.11 -3.04 5.28 30.67 0.16 -2.88 16 8 C -0.11 -2.65 6.09 30.64 0.19 -2.47 16 9 C 0.06 1.30 6.55 86.32 0.57 1.86 16 10 N -0.70 -18.65 6.85 -514.00 -3.52 -22.17 16 11 C 0.09 2.65 5.71 86.33 0.49 3.14 16 12 C 0.22 11.49 1.87 44.17 0.08 11.57 16 13 H -0.05 -2.66 8.14 -2.39 -0.02 -2.68 16 14 C -0.11 -5.77 7.37 71.98 0.53 -5.24 16 15 C -0.51 -28.71 7.65 25.60 0.20 -28.52 16 16 H 0.06 3.21 6.95 -2.91 -0.02 3.19 16 17 C 0.01 0.54 5.28 84.65 0.45 0.98 16 18 N -0.92 -54.25 11.29 21.45 0.24 -54.00 16 19 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 20 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.06 1.54 6.82 -2.39 -0.02 1.52 16 26 H 0.06 2.66 6.17 -2.39 -0.01 2.65 16 27 H 0.01 0.55 8.00 -2.38 -0.02 0.53 16 28 H 0.01 0.53 7.54 -2.39 -0.02 0.51 16 29 H 0.07 2.28 6.47 -2.38 -0.02 2.27 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.35 7.77 8.90 -89.69 -0.80 6.97 16 37 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.06 2.26 7.78 -2.39 -0.02 2.25 16 39 H 0.05 3.11 5.89 -2.39 -0.01 3.10 16 40 H 0.04 1.80 7.15 -2.39 -0.02 1.78 16 41 H 0.02 1.16 6.13 -2.39 -0.01 1.14 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -61.19 311.43 -0.15 -61.34 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.18 Total: 16.72 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: 4.16 Total: -22.52 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -6.52 Total: -102.01 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -61.19 -0.15 -61.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300063282.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.754 kcal (2) G-P(sol) polarization free energy of solvation -61.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds