Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50692 * 109.47442 * 120.00276 * 2 1 3 5 5 H 1.07995 * 120.00362 * 114.74724 * 4 2 1 6 6 C 1.37885 * 119.99799 * 294.74675 * 4 2 1 7 7 N 1.31510 * 119.99933 * 160.32283 * 6 4 2 8 8 Si 1.86794 * 119.99910 * 340.59850 * 6 4 2 9 9 H 1.48508 * 109.47036 * 271.33035 * 8 6 4 10 10 H 1.48494 * 109.47306 * 31.33134 * 8 6 4 11 11 H 1.48502 * 109.47076 * 151.33660 * 8 6 4 12 12 N 1.46906 * 109.46602 * 240.00064 * 2 1 3 13 13 C 1.46894 * 110.99684 * 215.90594 * 12 2 1 14 14 C 1.46900 * 110.99627 * 91.95665 * 12 2 1 15 15 H 1.08997 * 109.52436 * 89.44503 * 14 12 2 16 16 C 1.53121 * 109.52502 * 329.24815 * 14 12 2 17 17 C 1.53036 * 109.28006 * 182.44433 * 16 14 12 18 18 N 1.46848 * 109.52246 * 59.17806 * 17 16 14 19 19 C 1.46846 * 111.20102 * 298.26008 * 18 17 16 20 20 C 1.53037 * 109.52386 * 61.74343 * 19 18 17 21 21 C 1.52996 * 109.50379 * 180.88311 * 20 19 18 22 22 C 1.52992 * 109.53713 * 60.77769 * 20 19 18 23 23 H 1.09008 * 109.46557 * 274.25201 * 1 2 3 24 24 H 1.08998 * 109.47187 * 34.24661 * 1 2 3 25 25 H 1.08990 * 109.47130 * 154.25381 * 1 2 3 26 26 H 0.97001 * 120.00441 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47678 * 72.00205 * 13 12 2 28 28 H 1.09006 * 109.46992 * 192.00040 * 13 12 2 29 29 H 1.09003 * 109.47826 * 311.99939 * 13 12 2 30 30 H 1.09000 * 109.50066 * 302.38740 * 16 14 12 31 31 H 1.09000 * 109.49914 * 62.50253 * 16 14 12 32 32 H 1.09002 * 109.46376 * 299.16639 * 17 16 14 33 33 H 1.08993 * 109.45425 * 179.19100 * 17 16 14 34 34 H 1.00904 * 111.00364 * 174.15865 * 18 17 16 35 35 H 1.09004 * 109.46374 * 301.72390 * 19 18 17 36 36 H 1.08995 * 109.46353 * 181.75929 * 19 18 17 37 37 H 1.08996 * 109.47276 * 187.67242 * 21 20 19 38 38 H 1.09005 * 109.47155 * 307.67095 * 21 20 19 39 39 H 1.08999 * 109.47238 * 67.67184 * 21 20 19 40 40 H 1.08997 * 109.47873 * 300.18114 * 22 20 19 41 41 H 1.08999 * 109.47069 * 60.18377 * 22 20 19 42 42 H 1.08997 * 109.47220 * 180.17537 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5816 -1.6353 1.1335 6 6 1.7910 -0.1796 2.4798 7 7 1.8687 -0.9456 3.5459 8 14 1.3459 1.6258 2.6574 9 1 2.5865 2.4300 2.7976 10 1 0.5998 2.0725 1.4537 11 1 0.4978 1.8104 3.8624 12 7 2.0196 -0.6925 -1.1995 13 6 3.2423 -1.4521 -0.9066 14 6 2.2391 0.2542 -2.3011 15 1 3.2586 0.6371 -2.2546 16 6 1.2487 1.4159 -2.1825 17 6 1.4413 2.3669 -3.3660 18 7 1.2209 1.6384 -4.6218 19 6 2.1908 0.5473 -4.7802 20 6 2.0206 -0.4580 -3.6390 21 6 3.0460 -1.5831 -3.7922 22 6 0.6082 -1.0447 -3.6805 23 1 -0.3633 0.0762 1.0249 24 1 -0.3633 0.8495 -0.5783 25 1 -0.3633 -0.9256 -0.4464 26 1 1.6985 -0.5724 4.4249 27 1 2.9925 -2.3238 -0.3017 28 1 3.7006 -1.7773 -1.8407 29 1 3.9414 -0.8190 -0.3601 30 1 0.2302 1.0279 -2.1895 31 1 1.4278 1.9531 -1.2511 32 1 2.4559 2.7652 -3.3505 33 1 0.7279 3.1875 -3.2921 34 1 1.2485 2.2644 -5.4127 35 1 3.2019 0.9541 -4.7581 36 1 2.0218 0.0467 -5.7335 37 1 2.8381 -2.3659 -3.0628 38 1 2.9827 -1.9979 -4.7982 39 1 4.0476 -1.1872 -3.6247 40 1 -0.1219 -0.2427 -3.5727 41 1 0.4532 -1.5516 -4.6330 42 1 0.4871 -1.7582 -2.8655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300774088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 26.372594 kcal Electronic energy + Delta-G solvation = -19404.937634 eV Core-core repulsion = 16806.693072 eV Total energy + Delta-G solvation = -2598.244562 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.82285 -36.26406 -33.83475 -32.35624 -30.54351 -29.85163 -27.00923 -26.41556 -25.02317 -23.90808 -22.51207 -21.36406 -19.33597 -17.93364 -16.72448 -16.17042 -14.94395 -14.73332 -14.52727 -14.34189 -13.89827 -13.69622 -13.09249 -12.82348 -12.43258 -12.33650 -11.90901 -11.83824 -11.60361 -11.39897 -11.30719 -11.11115 -10.80444 -10.76690 -10.49591 -10.35375 -10.22475 -10.10680 -9.81662 -9.49958 -9.42620 -8.91021 -8.33649 -8.26726 -7.17599 -6.09863 -4.00798 3.28028 3.37758 3.40939 4.31909 4.43939 4.79163 5.00766 5.10889 5.20643 5.32465 5.48888 5.53325 5.68669 5.77188 5.81066 5.89921 5.94935 6.05545 6.17830 6.19685 6.25901 6.38676 6.44672 6.52607 6.55073 6.67039 6.70445 6.79712 6.85139 6.90768 7.01069 7.02443 7.13526 7.16761 7.47338 7.51593 7.68337 8.08724 8.25004 8.69214 9.01222 9.58197 11.01979 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.008647 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.592497 B = 3237.296744 C = 3718.871322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.181 3.819 3 H 0.005 0.995 4 C -0.534 4.534 5 H 0.088 0.912 6 C 0.079 3.921 7 N -0.888 5.888 8 Si 0.858 3.142 9 H -0.282 1.282 10 H -0.258 1.258 11 H -0.288 1.288 12 N -0.521 5.521 13 C 0.029 3.971 14 C 0.096 3.904 15 H 0.028 0.972 16 C -0.130 4.130 17 C 0.060 3.940 18 N -0.685 5.685 19 C 0.069 3.931 20 C -0.049 4.049 21 C -0.143 4.143 22 C -0.119 4.119 23 H 0.044 0.956 24 H 0.025 0.975 25 H 0.051 0.949 26 H 0.262 0.738 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.024 0.976 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.335 0.665 35 H 0.022 0.978 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.044 0.956 39 H 0.046 0.954 40 H 0.060 0.940 41 H 0.033 0.967 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.312 4.035 -15.302 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.074 3.926 3 H 0.022 0.978 4 C -0.571 4.571 5 H 0.105 0.895 6 C -0.124 4.124 7 N -0.525 5.525 8 Si 0.685 3.315 9 H -0.208 1.208 10 H -0.182 1.182 11 H -0.214 1.214 12 N -0.245 5.245 13 C -0.119 4.119 14 C -0.013 4.013 15 H 0.046 0.954 16 C -0.167 4.167 17 C -0.070 4.070 18 N -0.316 5.316 19 C -0.061 4.061 20 C -0.050 4.050 21 C -0.201 4.201 22 C -0.176 4.176 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.052 0.948 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.557 3.278 -14.954 15.319 hybrid contribution 1.324 2.174 0.424 2.580 sum 0.766 5.452 -14.530 15.538 Atomic orbital electron populations 1.22263 0.97938 0.99259 0.99616 1.19706 0.92239 0.92771 0.87884 0.97794 1.21407 1.36777 1.10200 0.88710 0.89472 1.24883 0.94418 0.97144 0.95920 1.70019 1.48852 1.34860 0.98775 0.87201 0.78671 0.87464 0.78163 1.20810 1.18163 1.21447 1.62124 1.29862 1.25372 1.07116 1.22630 0.91223 0.98919 0.99135 1.21606 0.96054 0.91665 0.92007 0.95424 1.22196 1.01909 0.96003 0.96636 1.21962 0.98701 0.96034 0.90326 1.60251 1.53046 1.14028 1.04248 1.22007 0.92563 0.92716 0.98776 1.20504 0.96961 0.94185 0.93313 1.22075 0.97834 0.99054 1.01097 1.21612 0.95003 1.00824 1.00160 0.93655 0.95644 0.93017 0.92770 0.91178 0.92864 0.95700 0.89210 0.90949 0.95872 0.91154 0.84794 0.95934 0.91201 0.90474 0.93692 0.93535 0.92093 0.94805 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 7.78 37.16 0.29 -2.66 16 2 C 0.18 4.23 1.39 -68.86 -0.10 4.13 16 3 H 0.00 0.11 4.32 -51.93 -0.22 -0.11 16 4 C -0.53 -14.63 7.92 -34.44 -0.27 -14.90 16 5 H 0.09 2.55 5.40 -52.49 -0.28 2.27 16 6 C 0.08 2.25 5.06 -17.82 -0.09 2.16 16 7 N -0.89 -26.81 13.96 55.43 0.77 -26.04 16 8 Si 0.86 21.23 26.01 -169.99 -4.42 16.80 16 9 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.26 -6.03 6.03 56.52 0.34 -5.69 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 N -0.52 -10.55 3.51 -228.14 -0.80 -11.35 16 13 C 0.03 0.57 7.54 60.06 0.45 1.03 16 14 C 0.10 1.67 1.54 -67.58 -0.10 1.56 16 15 H 0.03 0.51 7.85 -51.93 -0.41 0.10 16 16 C -0.13 -2.19 3.37 -26.65 -0.09 -2.28 16 17 C 0.06 0.81 6.55 -3.83 -0.03 0.79 16 18 N -0.69 -8.53 6.13 -113.82 -0.70 -9.22 16 19 C 0.07 0.88 5.27 -3.83 -0.02 0.86 16 20 C -0.05 -0.71 0.59 -154.43 -0.09 -0.80 16 21 C -0.14 -1.95 6.85 37.16 0.25 -1.70 16 22 C -0.12 -1.81 7.85 37.15 0.29 -1.52 16 23 H 0.04 1.07 6.02 -51.92 -0.31 0.76 16 24 H 0.02 0.50 5.67 -51.93 -0.29 0.21 16 25 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.07 1.52 6.50 -51.93 -0.34 1.18 16 28 H 0.05 0.90 4.04 -51.93 -0.21 0.69 16 29 H 0.02 0.53 7.60 -51.93 -0.39 0.14 16 30 H 0.09 1.59 4.56 -51.93 -0.24 1.35 16 31 H 0.07 1.35 5.83 -51.93 -0.30 1.05 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.34 3.36 8.90 -39.29 -0.35 3.01 16 35 H 0.02 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.15 6.13 -51.93 -0.32 0.83 16 38 H 0.04 0.53 8.13 -51.93 -0.42 0.11 16 39 H 0.05 0.62 7.63 -51.93 -0.40 0.22 16 40 H 0.06 0.98 6.01 -51.93 -0.31 0.66 16 41 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 1.14 7.54 -51.93 -0.39 0.75 16 LS Contribution 290.80 15.07 4.38 4.38 Total: -1.00 -28.89 290.80 -7.19 -36.08 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -6.92 Total: 2.67 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 0.50 Total: -13.34 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.72 Total: -46.60 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.42 Total: 16.80 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.89 -7.19 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300774088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.454 kcal (2) G-P(sol) polarization free energy of solvation -28.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds