Wall clock time and date at job start Mon Mar 30 2020 03:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50692 * 109.47442 * 120.00276 * 2 1 3 5 5 H 1.07995 * 120.00362 * 114.74724 * 4 2 1 6 6 C 1.37885 * 119.99799 * 294.74675 * 4 2 1 7 7 N 1.31510 * 119.99933 * 160.32283 * 6 4 2 8 8 Si 1.86794 * 119.99910 * 340.59850 * 6 4 2 9 9 H 1.48508 * 109.47036 * 271.33035 * 8 6 4 10 10 H 1.48494 * 109.47306 * 31.33134 * 8 6 4 11 11 H 1.48502 * 109.47076 * 151.33660 * 8 6 4 12 12 N 1.46906 * 109.46602 * 240.00064 * 2 1 3 13 13 C 1.46894 * 110.99684 * 215.90594 * 12 2 1 14 14 C 1.46900 * 110.99627 * 91.95665 * 12 2 1 15 15 H 1.08997 * 109.52436 * 89.44503 * 14 12 2 16 16 C 1.53121 * 109.52502 * 329.24815 * 14 12 2 17 17 C 1.53036 * 109.28006 * 182.44433 * 16 14 12 18 18 N 1.46848 * 109.52246 * 59.17806 * 17 16 14 19 19 C 1.46846 * 111.20102 * 298.26008 * 18 17 16 20 20 C 1.53037 * 109.52386 * 61.74343 * 19 18 17 21 21 C 1.52996 * 109.50379 * 180.88311 * 20 19 18 22 22 C 1.52992 * 109.53713 * 60.77769 * 20 19 18 23 23 H 1.09008 * 109.46557 * 274.25201 * 1 2 3 24 24 H 1.08998 * 109.47187 * 34.24661 * 1 2 3 25 25 H 1.08990 * 109.47130 * 154.25381 * 1 2 3 26 26 H 0.97001 * 120.00441 * 180.02562 * 7 6 4 27 27 H 1.08998 * 109.47678 * 72.00205 * 13 12 2 28 28 H 1.09006 * 109.46992 * 192.00040 * 13 12 2 29 29 H 1.09003 * 109.47826 * 311.99939 * 13 12 2 30 30 H 1.09000 * 109.50066 * 302.38740 * 16 14 12 31 31 H 1.09000 * 109.49914 * 62.50253 * 16 14 12 32 32 H 1.09002 * 109.46376 * 299.16639 * 17 16 14 33 33 H 1.08993 * 109.45425 * 179.19100 * 17 16 14 34 34 H 1.00904 * 111.00364 * 174.15865 * 18 17 16 35 35 H 1.09004 * 109.46374 * 301.72390 * 19 18 17 36 36 H 1.08995 * 109.46353 * 181.75929 * 19 18 17 37 37 H 1.08996 * 109.47276 * 187.67242 * 21 20 19 38 38 H 1.09005 * 109.47155 * 307.67095 * 21 20 19 39 39 H 1.08999 * 109.47238 * 67.67184 * 21 20 19 40 40 H 1.08997 * 109.47873 * 300.18114 * 22 20 19 41 41 H 1.08999 * 109.47069 * 60.18377 * 22 20 19 42 42 H 1.08997 * 109.47220 * 180.17537 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5816 -1.6353 1.1335 6 6 1.7910 -0.1796 2.4798 7 7 1.8687 -0.9456 3.5459 8 14 1.3459 1.6258 2.6574 9 1 2.5865 2.4300 2.7976 10 1 0.5998 2.0725 1.4537 11 1 0.4978 1.8104 3.8624 12 7 2.0196 -0.6925 -1.1995 13 6 3.2423 -1.4521 -0.9066 14 6 2.2391 0.2542 -2.3011 15 1 3.2586 0.6371 -2.2546 16 6 1.2487 1.4159 -2.1825 17 6 1.4413 2.3669 -3.3660 18 7 1.2209 1.6384 -4.6218 19 6 2.1908 0.5473 -4.7802 20 6 2.0206 -0.4580 -3.6390 21 6 3.0460 -1.5831 -3.7922 22 6 0.6082 -1.0447 -3.6805 23 1 -0.3633 0.0762 1.0249 24 1 -0.3633 0.8495 -0.5783 25 1 -0.3633 -0.9256 -0.4464 26 1 1.6985 -0.5724 4.4249 27 1 2.9925 -2.3238 -0.3017 28 1 3.7006 -1.7773 -1.8407 29 1 3.9414 -0.8190 -0.3601 30 1 0.2302 1.0279 -2.1895 31 1 1.4278 1.9531 -1.2511 32 1 2.4559 2.7652 -3.3505 33 1 0.7279 3.1875 -3.2921 34 1 1.2485 2.2644 -5.4127 35 1 3.2019 0.9541 -4.7581 36 1 2.0218 0.0467 -5.7335 37 1 2.8381 -2.3659 -3.0628 38 1 2.9827 -1.9979 -4.7982 39 1 4.0476 -1.1872 -3.6247 40 1 -0.1219 -0.2427 -3.5727 41 1 0.4532 -1.5516 -4.6330 42 1 0.4871 -1.7582 -2.8655 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300774088.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:42 Heat of formation + Delta-G solvation = 5.714257 kcal Electronic energy + Delta-G solvation = -19405.833447 eV Core-core repulsion = 16806.693072 eV Total energy + Delta-G solvation = -2599.140375 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14510 -37.77971 -35.15765 -34.26360 -31.89355 -31.64426 -28.24171 -27.69952 -26.89143 -25.39210 -24.01263 -22.55996 -21.11205 -19.27410 -18.59594 -17.36452 -16.72599 -16.24988 -15.91859 -15.68645 -15.40561 -15.02524 -14.60341 -14.21639 -14.10545 -13.87527 -13.58190 -13.29844 -12.97111 -12.87703 -12.77394 -12.60825 -12.50555 -12.07819 -12.06025 -12.00208 -11.69969 -11.55633 -11.48986 -10.99111 -10.94724 -10.82509 -10.40870 -9.28367 -8.85042 -8.30042 -6.24444 1.30188 1.34167 1.43994 2.34993 3.01640 3.27370 3.36901 3.85863 3.89478 4.16310 4.28591 4.41429 4.44578 4.56517 4.59045 4.66691 4.70099 4.78125 4.85131 4.89606 4.95031 4.95722 5.00529 5.04835 5.11478 5.13979 5.24912 5.29061 5.32234 5.40908 5.49377 5.58036 5.62802 5.77590 5.82014 6.11681 6.12035 6.43569 6.63682 6.78094 6.86520 7.38356 8.85032 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.031118 B = 0.008647 C = 0.007527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.592497 B = 3237.296744 C = 3718.871322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.186 3.814 3 H 0.002 0.998 4 C -0.536 4.536 5 H 0.055 0.945 6 C 0.025 3.975 7 N -0.936 5.936 8 Si 0.918 3.082 9 H -0.279 1.279 10 H -0.236 1.236 11 H -0.287 1.287 12 N -0.523 5.523 13 C 0.038 3.962 14 C 0.093 3.907 15 H 0.020 0.980 16 C -0.129 4.129 17 C 0.067 3.933 18 N -0.687 5.687 19 C 0.074 3.926 20 C -0.047 4.047 21 C -0.142 4.142 22 C -0.111 4.111 23 H 0.026 0.974 24 H 0.050 0.950 25 H 0.049 0.951 26 H 0.264 0.736 27 H 0.043 0.957 28 H 0.088 0.912 29 H 0.001 0.999 30 H 0.081 0.919 31 H 0.051 0.949 32 H 0.026 0.974 33 H 0.086 0.914 34 H 0.354 0.646 35 H 0.027 0.973 36 H 0.091 0.909 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.052 0.948 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.102 5.710 -18.208 19.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.078 3.922 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.073 0.927 6 C -0.174 4.174 7 N -0.576 5.576 8 Si 0.742 3.258 9 H -0.205 1.205 10 H -0.158 1.158 11 H -0.213 1.213 12 N -0.246 5.246 13 C -0.110 4.110 14 C -0.016 4.016 15 H 0.038 0.962 16 C -0.167 4.167 17 C -0.063 4.063 18 N -0.319 5.319 19 C -0.056 4.056 20 C -0.048 4.048 21 C -0.199 4.199 22 C -0.169 4.169 23 H 0.045 0.955 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.020 0.980 30 H 0.099 0.901 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.045 0.955 36 H 0.110 0.890 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.973 4.965 -17.902 18.604 hybrid contribution 1.491 1.555 1.280 2.506 sum 0.518 6.520 -16.622 17.863 Atomic orbital electron populations 1.22136 0.96896 1.00338 0.98872 1.19570 0.92921 0.92179 0.87510 0.98034 1.21730 1.35740 1.09328 0.90616 0.92652 1.25658 0.94787 1.01335 0.95588 1.70142 1.51120 1.36902 0.99392 0.86228 0.78679 0.81998 0.78873 1.20493 1.15847 1.21321 1.62125 1.29859 1.25998 1.06622 1.22532 0.90859 0.97467 1.00103 1.21763 0.95863 0.91743 0.92197 0.96243 1.22127 1.00981 0.96141 0.97457 1.21846 0.99427 0.95505 0.89558 1.60181 1.52935 1.14373 1.04439 1.21964 0.92894 0.92307 0.98454 1.20516 0.96940 0.94947 0.92439 1.22022 0.97577 0.98221 1.02118 1.21516 0.95105 1.00054 1.00191 0.95453 0.93088 0.93181 0.92718 0.93853 0.89406 0.98026 0.90085 0.93014 0.95538 0.89581 0.82693 0.95503 0.89050 0.92223 0.91168 0.93235 0.92843 0.92882 0.93962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 7.78 71.98 0.56 -4.91 16 2 C 0.19 8.72 1.39 44.17 0.06 8.78 16 3 H 0.00 0.11 4.32 -2.39 -0.01 0.10 16 4 C -0.54 -30.38 7.92 25.60 0.20 -30.18 16 5 H 0.06 3.43 5.40 -2.91 -0.02 3.41 16 6 C 0.02 1.45 5.06 84.66 0.43 1.88 16 7 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 8 Si 0.92 44.12 26.01 68.60 1.78 45.90 16 9 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 10 H -0.24 -10.38 6.03 99.48 0.60 -9.78 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 N -0.52 -21.16 3.51 -875.71 -3.07 -24.23 16 13 C 0.04 1.57 7.54 127.69 0.96 2.53 16 14 C 0.09 3.10 1.54 45.00 0.07 3.17 16 15 H 0.02 0.69 7.85 -2.39 -0.02 0.67 16 16 C -0.13 -4.09 3.37 30.65 0.10 -3.99 16 17 C 0.07 1.59 6.55 86.33 0.57 2.16 16 18 N -0.69 -14.33 6.13 -514.01 -3.15 -17.48 16 19 C 0.07 1.56 5.27 86.33 0.45 2.02 16 20 C -0.05 -1.26 0.59 -52.13 -0.03 -1.29 16 21 C -0.14 -3.49 6.85 71.98 0.49 -3.00 16 22 C -0.11 -3.13 7.85 71.98 0.56 -2.56 16 23 H 0.03 1.27 6.02 -2.38 -0.01 1.25 16 24 H 0.05 1.96 5.67 -2.39 -0.01 1.94 16 25 H 0.05 2.17 8.08 -2.39 -0.02 2.15 16 26 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 27 H 0.04 1.98 6.50 -2.39 -0.02 1.96 16 28 H 0.09 2.94 4.04 -2.38 -0.01 2.93 16 29 H 0.00 0.05 7.60 -2.39 -0.02 0.03 16 30 H 0.08 2.70 4.56 -2.39 -0.01 2.69 16 31 H 0.05 1.84 5.83 -2.39 -0.01 1.82 16 32 H 0.03 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.35 5.49 8.90 -89.69 -0.80 4.69 16 35 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.68 6.13 -2.39 -0.01 1.66 16 38 H 0.07 1.39 8.13 -2.38 -0.02 1.37 16 39 H 0.05 1.19 7.63 -2.39 -0.02 1.17 16 40 H 0.05 1.58 6.01 -2.39 -0.01 1.56 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.04 1.39 7.54 -2.39 -0.02 1.37 16 Total: -1.00 -63.70 290.80 0.40 -63.30 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.10 Total: 16.06 kcal Atomic # 6 Polarization: -29.83 SS G_CDS: 4.43 Total: -25.40 kcal Atomic # 7 Polarization: -93.94 SS G_CDS: -5.92 Total: -99.86 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.78 Total: 45.90 kcal Total: -63.70 0.40 -63.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300774088.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.016 kcal (2) G-P(sol) polarization free energy of solvation -63.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds