Wall clock time and date at job start Mon Mar 30 2020 03:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46998 * 2 1 4 4 C 1.50699 * 109.46924 * 240.00513 * 2 1 3 5 5 H 1.08004 * 120.00052 * 240.00196 * 4 2 1 6 6 C 1.37876 * 120.00249 * 59.99903 * 4 2 1 7 7 N 1.31515 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46606 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46956 * 119.99626 * 8 6 4 11 11 H 1.48496 * 109.46877 * 240.00062 * 8 6 4 12 12 N 1.46895 * 109.47245 * 120.00552 * 2 1 3 13 13 C 1.46905 * 110.99572 * 263.29438 * 12 2 1 14 14 C 1.52997 * 109.47215 * 54.28643 * 13 12 2 15 15 C 1.53000 * 109.46789 * 174.28417 * 13 12 2 16 16 C 1.53001 * 109.47036 * 294.28518 * 13 12 2 17 17 N 1.46906 * 109.46895 * 293.92351 * 16 13 12 18 18 C 1.48526 * 111.00024 * 59.15743 * 17 16 13 19 19 C 1.54935 * 103.22747 * 159.71791 * 18 17 16 20 20 C 1.54591 * 102.92035 * 322.58530 * 19 18 17 21 21 C 1.47898 * 110.99767 * 176.55329 * 17 16 13 22 22 H 1.09001 * 109.46953 * 294.27804 * 1 2 3 23 23 H 1.08995 * 109.46820 * 174.27611 * 1 2 3 24 24 H 1.08993 * 109.46955 * 54.27359 * 1 2 3 25 25 H 0.97006 * 120.00088 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00215 * 27.24067 * 12 2 1 27 27 H 1.09002 * 109.47483 * 54.98160 * 14 13 12 28 28 H 1.09008 * 109.47099 * 174.98184 * 14 13 12 29 29 H 1.08998 * 109.47120 * 294.97645 * 14 13 12 30 30 H 1.09004 * 109.47479 * 64.69962 * 15 13 12 31 31 H 1.09008 * 109.46901 * 184.69362 * 15 13 12 32 32 H 1.08994 * 109.47692 * 304.69543 * 15 13 12 33 33 H 1.08994 * 109.47243 * 53.92447 * 16 13 12 34 34 H 1.09004 * 109.46764 * 173.92896 * 16 13 12 35 35 H 1.09008 * 110.66694 * 278.15721 * 18 17 16 36 36 H 1.09000 * 110.66738 * 41.27810 * 18 17 16 37 37 H 1.08998 * 110.72097 * 204.22479 * 19 18 17 38 38 H 1.09005 * 110.72364 * 80.94709 * 19 18 17 39 39 H 1.09000 * 110.30717 * 263.04148 * 20 19 18 40 40 H 1.08998 * 110.30913 * 140.87801 * 20 19 18 41 41 H 1.09009 * 109.91628 * 333.50975 * 21 17 16 42 42 H 1.09001 * 109.92110 * 94.60542 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0198 -0.6926 1.1993 13 6 2.3462 0.2655 2.2640 14 6 1.1341 1.1587 2.5357 15 6 2.7151 -0.4953 3.5391 16 6 3.5295 1.1310 1.8261 17 7 4.7305 0.2936 1.7058 18 6 4.5236 -0.7951 0.7170 19 6 5.9677 -1.2094 0.3384 20 6 6.7224 0.1397 0.3261 21 6 5.8776 1.0811 1.2044 22 1 -0.3633 0.4225 0.9368 23 1 -0.3633 -1.0225 -0.1025 24 1 -0.3633 0.6000 -0.8342 25 1 0.7087 1.1615 -3.4844 26 1 1.3507 -1.3760 1.5207 27 1 0.2677 0.5368 2.7610 28 1 1.3450 1.8092 3.3846 29 1 0.9260 1.7665 1.6551 30 1 3.6274 -1.0673 3.3699 31 1 2.8762 0.2136 4.3514 32 1 1.9047 -1.1741 3.8046 33 1 3.3077 1.5887 0.8621 34 1 3.7031 1.9110 2.5674 35 1 3.9900 -1.6305 1.1705 36 1 3.9880 -0.4243 -0.1570 37 1 5.9899 -1.6729 -0.6479 38 1 6.3864 -1.8789 1.0898 39 1 6.7874 0.5276 -0.6904 40 1 7.7192 0.0195 0.7505 41 1 5.5194 1.9217 0.6099 42 1 6.4723 1.4457 2.0419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308631724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:18 Heat of formation + Delta-G solvation = 10.503740 kcal Electronic energy + Delta-G solvation = -19291.265862 eV Core-core repulsion = 16692.333175 eV Total energy + Delta-G solvation = -2598.932687 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.06709 -36.67966 -33.62702 -31.33453 -30.21491 -28.29754 -27.25369 -26.40183 -25.19381 -24.66663 -20.54239 -20.36855 -20.14906 -18.23744 -16.42442 -15.51723 -15.29613 -14.74481 -14.55187 -13.75798 -13.36215 -13.09027 -12.84340 -12.44203 -12.11798 -12.02252 -11.81833 -11.64705 -11.35761 -11.29421 -10.92970 -10.88915 -10.78645 -10.57373 -10.47026 -10.31761 -10.15430 -10.10995 -9.95050 -9.84704 -9.59720 -8.93064 -8.34327 -7.55372 -7.05509 -5.98488 -3.99575 3.29817 3.38540 3.42983 4.43314 4.72991 5.20721 5.23690 5.31527 5.32602 5.48971 5.53131 5.70775 5.89381 6.01735 6.04289 6.09677 6.14706 6.22229 6.24889 6.33501 6.39667 6.48900 6.52260 6.57510 6.63187 6.69882 6.79299 6.89263 6.93360 7.12475 7.20062 7.35681 7.44105 7.71069 7.75571 7.85451 7.94563 8.32124 8.61353 8.64604 9.07527 9.64704 11.08254 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.011188 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.529300 B = 2502.174238 C = 3542.119045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.209 3.791 3 H 0.033 0.967 4 C -0.489 4.489 5 H 0.066 0.934 6 C 0.055 3.945 7 N -0.896 5.896 8 Si 0.889 3.111 9 H -0.272 1.272 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.670 5.670 13 C 0.112 3.888 14 C -0.175 4.175 15 C -0.128 4.128 16 C 0.064 3.936 17 N -0.513 5.513 18 C 0.044 3.956 19 C -0.135 4.135 20 C -0.128 4.128 21 C 0.035 3.965 22 H 0.014 0.986 23 H 0.028 0.972 24 H 0.081 0.919 25 H 0.257 0.743 26 H 0.323 0.677 27 H 0.052 0.948 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.387 -0.312 8.199 9.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.101 3.899 3 H 0.051 0.949 4 C -0.527 4.527 5 H 0.084 0.916 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.718 3.282 9 H -0.196 1.196 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.299 5.299 13 C 0.019 3.981 14 C -0.235 4.235 15 C -0.186 4.186 16 C -0.065 4.065 17 N -0.237 5.237 18 C -0.083 4.083 19 C -0.173 4.173 20 C -0.166 4.166 21 C -0.093 4.093 22 H 0.033 0.967 23 H 0.047 0.953 24 H 0.100 0.900 25 H 0.067 0.933 26 H 0.140 0.860 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.067 -0.446 8.345 10.327 hybrid contribution -0.913 0.394 -1.493 1.794 sum 5.154 -0.051 6.852 8.574 Atomic orbital electron populations 1.22571 1.00573 1.00076 0.99761 1.19228 0.89659 0.94283 0.86716 0.94923 1.21252 1.29808 1.12227 0.89458 0.91574 1.24955 0.95430 0.95201 0.98964 1.69911 1.37377 1.23262 1.23063 0.86570 0.78551 0.79787 0.83307 1.19636 1.21320 1.21341 1.61211 1.48343 1.15346 1.05050 1.20849 0.92746 0.92234 0.92227 1.22675 0.98978 1.00495 1.01311 1.21731 1.01738 0.99573 0.95522 1.22255 0.90034 0.94430 0.99787 1.64787 1.03400 1.10058 1.45471 1.23758 0.93412 0.94998 0.96142 1.22639 0.97952 0.96110 1.00605 1.22328 0.98447 0.96508 0.99301 1.22782 0.93681 0.95865 0.96989 0.96750 0.95310 0.90046 0.93289 0.86010 0.92932 0.93775 0.91851 0.90783 0.93669 0.94151 0.93762 0.92425 0.88729 0.88912 0.91944 0.92350 0.92141 0.92287 0.94555 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.95 8.39 37.16 0.31 -3.63 16 2 C 0.21 4.85 1.28 -68.86 -0.09 4.76 16 3 H 0.03 0.85 5.09 -51.93 -0.26 0.59 16 4 C -0.49 -12.65 6.91 -34.44 -0.24 -12.89 16 5 H 0.07 1.73 7.20 -52.48 -0.38 1.36 16 6 C 0.05 1.48 5.30 -17.82 -0.09 1.38 16 7 N -0.90 -25.06 11.38 55.43 0.63 -24.43 16 8 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 N -0.67 -13.09 2.89 -94.24 -0.27 -13.36 16 13 C 0.11 1.92 0.58 -131.60 -0.08 1.85 16 14 C -0.18 -2.92 6.98 37.16 0.26 -2.66 16 15 C -0.13 -1.95 8.53 37.16 0.32 -1.63 16 16 C 0.06 1.15 3.88 -3.82 -0.01 1.13 16 17 N -0.51 -8.97 4.29 -230.45 -0.99 -9.96 16 18 C 0.04 0.82 4.34 -1.90 -0.01 0.82 16 19 C -0.13 -2.22 7.06 -24.87 -0.18 -2.39 16 20 C -0.13 -1.94 6.93 -25.38 -0.18 -2.11 16 21 C 0.04 0.57 6.70 -2.76 -0.02 0.55 16 22 H 0.01 0.29 5.26 -51.93 -0.27 0.01 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 2.12 6.24 -51.93 -0.32 1.79 16 25 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 26 H 0.32 6.17 8.21 -39.29 -0.32 5.85 16 27 H 0.05 0.85 7.28 -51.93 -0.38 0.48 16 28 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 29 H 0.06 1.19 6.14 -51.93 -0.32 0.87 16 30 H 0.07 1.20 6.80 -51.93 -0.35 0.85 16 31 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.04 0.57 8.12 -51.93 -0.42 0.15 16 33 H 0.04 0.93 6.01 -51.93 -0.31 0.62 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 1.86 6.53 -51.92 -0.34 1.52 16 36 H 0.09 2.09 4.42 -51.93 -0.23 1.86 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.04 0.61 7.68 -51.92 -0.40 0.21 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 302.88 15.07 4.56 4.56 Total: -1.00 -26.06 302.88 -8.34 -34.40 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -7.25 Total: 7.51 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 0.00 Total: -14.84 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.63 Total: -47.75 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -26.06 -8.34 -34.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308631724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.901 kcal (2) G-P(sol) polarization free energy of solvation -26.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds