Wall clock time and date at job start Mon Mar 30 2020 03:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09002 * 109.46998 * 2 1 4 4 C 1.50699 * 109.46924 * 240.00513 * 2 1 3 5 5 H 1.08004 * 120.00052 * 240.00196 * 4 2 1 6 6 C 1.37876 * 120.00249 * 59.99903 * 4 2 1 7 7 N 1.31515 * 119.99968 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 120.00166 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.46606 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46956 * 119.99626 * 8 6 4 11 11 H 1.48496 * 109.46877 * 240.00062 * 8 6 4 12 12 N 1.46895 * 109.47245 * 120.00552 * 2 1 3 13 13 C 1.46905 * 110.99572 * 263.29438 * 12 2 1 14 14 C 1.52997 * 109.47215 * 54.28643 * 13 12 2 15 15 C 1.53000 * 109.46789 * 174.28417 * 13 12 2 16 16 C 1.53001 * 109.47036 * 294.28518 * 13 12 2 17 17 N 1.46906 * 109.46895 * 293.92351 * 16 13 12 18 18 C 1.48526 * 111.00024 * 59.15743 * 17 16 13 19 19 C 1.54935 * 103.22747 * 159.71791 * 18 17 16 20 20 C 1.54591 * 102.92035 * 322.58530 * 19 18 17 21 21 C 1.47898 * 110.99767 * 176.55329 * 17 16 13 22 22 H 1.09001 * 109.46953 * 294.27804 * 1 2 3 23 23 H 1.08995 * 109.46820 * 174.27611 * 1 2 3 24 24 H 1.08993 * 109.46955 * 54.27359 * 1 2 3 25 25 H 0.97006 * 120.00088 * 179.97438 * 7 6 4 26 26 H 1.00896 * 111.00215 * 27.24067 * 12 2 1 27 27 H 1.09002 * 109.47483 * 54.98160 * 14 13 12 28 28 H 1.09008 * 109.47099 * 174.98184 * 14 13 12 29 29 H 1.08998 * 109.47120 * 294.97645 * 14 13 12 30 30 H 1.09004 * 109.47479 * 64.69962 * 15 13 12 31 31 H 1.09008 * 109.46901 * 184.69362 * 15 13 12 32 32 H 1.08994 * 109.47692 * 304.69543 * 15 13 12 33 33 H 1.08994 * 109.47243 * 53.92447 * 16 13 12 34 34 H 1.09004 * 109.46764 * 173.92896 * 16 13 12 35 35 H 1.09008 * 110.66694 * 278.15721 * 18 17 16 36 36 H 1.09000 * 110.66738 * 41.27810 * 18 17 16 37 37 H 1.08998 * 110.72097 * 204.22479 * 19 18 17 38 38 H 1.09005 * 110.72364 * 80.94709 * 19 18 17 39 39 H 1.09000 * 110.30717 * 263.04148 * 20 19 18 40 40 H 1.08998 * 110.30913 * 140.87801 * 20 19 18 41 41 H 1.09009 * 109.91628 * 333.50975 * 21 17 16 42 42 H 1.09001 * 109.92110 * 94.60542 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9428 0.8298 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2875 -3.6039 10 1 1.1659 -1.5864 -4.8161 11 1 3.1465 -0.1871 -4.8165 12 7 2.0198 -0.6926 1.1993 13 6 2.3462 0.2655 2.2640 14 6 1.1341 1.1587 2.5357 15 6 2.7151 -0.4953 3.5391 16 6 3.5295 1.1310 1.8261 17 7 4.7305 0.2936 1.7058 18 6 4.5236 -0.7951 0.7170 19 6 5.9677 -1.2094 0.3384 20 6 6.7224 0.1397 0.3261 21 6 5.8776 1.0811 1.2044 22 1 -0.3633 0.4225 0.9368 23 1 -0.3633 -1.0225 -0.1025 24 1 -0.3633 0.6000 -0.8342 25 1 0.7087 1.1615 -3.4844 26 1 1.3507 -1.3760 1.5207 27 1 0.2677 0.5368 2.7610 28 1 1.3450 1.8092 3.3846 29 1 0.9260 1.7665 1.6551 30 1 3.6274 -1.0673 3.3699 31 1 2.8762 0.2136 4.3514 32 1 1.9047 -1.1741 3.8046 33 1 3.3077 1.5887 0.8621 34 1 3.7031 1.9110 2.5674 35 1 3.9900 -1.6305 1.1705 36 1 3.9880 -0.4243 -0.1570 37 1 5.9899 -1.6729 -0.6479 38 1 6.3864 -1.8789 1.0898 39 1 6.7874 0.5276 -0.6904 40 1 7.7192 0.0195 0.7505 41 1 5.5194 1.9217 0.6099 42 1 6.4723 1.4457 2.0419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308631724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:17 Heat of formation + Delta-G solvation = -4.941601 kcal Electronic energy + Delta-G solvation = -19291.935623 eV Core-core repulsion = 16692.333175 eV Total energy + Delta-G solvation = -2599.602447 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.53809 -38.15331 -35.46432 -33.07014 -31.69859 -29.72954 -28.83548 -27.82867 -27.10952 -26.15333 -22.35780 -21.82296 -21.47256 -19.74101 -18.36201 -16.96938 -16.70957 -16.66602 -16.10212 -15.28181 -14.89671 -14.60924 -14.49491 -13.85690 -13.71669 -13.52917 -13.45646 -13.08423 -12.95860 -12.77230 -12.69030 -12.54613 -12.23821 -12.16816 -12.01903 -11.89827 -11.82740 -11.67877 -11.58472 -11.25640 -11.15322 -10.82467 -10.40552 -9.05042 -8.69263 -8.04004 -6.10159 1.38394 1.42180 1.52441 2.45085 3.24141 3.32917 3.68437 3.90730 4.01738 4.14681 4.23587 4.34369 4.50004 4.67225 4.71548 4.73373 4.81640 4.84315 4.90949 4.94813 4.98542 5.07539 5.09218 5.13100 5.19577 5.20232 5.27261 5.32011 5.41669 5.55917 5.64359 5.66783 5.77442 5.81911 5.92194 6.27155 6.35206 6.43839 6.79497 6.97977 7.05319 7.57572 9.01032 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.018471 B = 0.011188 C = 0.007903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.529300 B = 2502.174238 C = 3542.119045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.223 3.777 3 H 0.003 0.997 4 C -0.488 4.488 5 H 0.059 0.941 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.944 3.056 9 H -0.265 1.265 10 H -0.286 1.286 11 H -0.289 1.289 12 N -0.667 5.667 13 C 0.109 3.891 14 C -0.169 4.169 15 C -0.117 4.117 16 C 0.068 3.932 17 N -0.505 5.505 18 C 0.048 3.952 19 C -0.132 4.132 20 C -0.124 4.124 21 C 0.031 3.969 22 H 0.037 0.963 23 H 0.025 0.975 24 H 0.050 0.950 25 H 0.255 0.745 26 H 0.327 0.673 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.004 0.996 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.087 0.913 41 H 0.020 0.980 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.567 -1.042 9.874 11.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.115 3.885 3 H 0.021 0.979 4 C -0.527 4.527 5 H 0.078 0.922 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.771 3.229 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.215 1.215 12 N -0.296 5.296 13 C 0.018 3.982 14 C -0.228 4.228 15 C -0.175 4.175 16 C -0.061 4.061 17 N -0.229 5.229 18 C -0.079 4.079 19 C -0.170 4.170 20 C -0.162 4.162 21 C -0.097 4.097 22 H 0.056 0.944 23 H 0.044 0.956 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.145 0.855 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.023 0.977 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.039 0.961 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.256 -1.187 10.035 12.440 hybrid contribution -1.254 0.649 -1.951 2.408 sum 6.002 -0.537 8.085 10.084 Atomic orbital electron populations 1.22418 1.00428 0.99331 0.99657 1.18872 0.89442 0.92614 0.87616 0.97875 1.21515 1.28889 1.11706 0.90614 0.92236 1.25620 0.95955 0.95953 1.01553 1.70041 1.38734 1.24587 1.23286 0.85706 0.77974 0.78873 0.80308 1.18956 1.21237 1.21502 1.61089 1.47928 1.15734 1.04884 1.20969 0.92719 0.92106 0.92442 1.22577 0.98815 1.00437 1.00989 1.21623 1.01683 0.99740 0.94421 1.22225 0.90744 0.94927 0.98220 1.64833 1.03487 1.09876 1.44697 1.23487 0.94640 0.95003 0.94767 1.22613 0.96445 0.97150 1.00833 1.22330 0.99508 0.95229 0.99098 1.22905 0.93451 0.95468 0.97884 0.94425 0.95551 0.93142 0.93588 0.85503 0.92311 0.91292 0.94691 0.91610 0.91829 0.92982 0.97748 0.90605 0.89595 0.92938 0.92427 0.90615 0.92729 0.89451 0.96116 0.89376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.47 8.39 71.99 0.60 -6.86 16 2 C 0.22 10.61 1.28 44.17 0.06 10.67 16 3 H 0.00 0.19 5.09 -2.39 -0.01 0.18 16 4 C -0.49 -25.86 6.91 25.60 0.18 -25.68 16 5 H 0.06 3.18 7.20 -2.91 -0.02 3.15 16 6 C 0.01 0.35 5.30 84.65 0.45 0.80 16 7 N -0.93 -53.34 11.38 21.45 0.24 -53.10 16 8 Si 0.94 44.10 29.54 68.60 2.03 46.12 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 N -0.67 -25.91 2.89 -452.08 -1.31 -27.22 16 13 C 0.11 3.64 0.58 3.53 0.00 3.64 16 14 C -0.17 -5.38 6.98 71.98 0.50 -4.88 16 15 C -0.12 -3.22 8.53 71.98 0.61 -2.61 16 16 C 0.07 2.41 3.88 86.30 0.34 2.74 16 17 N -0.51 -17.05 4.29 -883.02 -3.78 -20.83 16 18 C 0.05 1.81 4.34 86.65 0.38 2.19 16 19 C -0.13 -4.15 7.06 31.80 0.22 -3.92 16 20 C -0.12 -3.50 6.93 31.47 0.22 -3.28 16 21 C 0.03 0.95 6.70 86.45 0.58 1.53 16 22 H 0.04 1.54 5.26 -2.39 -0.01 1.53 16 23 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 24 H 0.05 2.69 6.24 -2.39 -0.01 2.67 16 25 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 26 H 0.33 12.19 8.21 -89.70 -0.74 11.46 16 27 H 0.06 1.79 7.28 -2.39 -0.02 1.77 16 28 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 29 H 0.03 1.30 6.14 -2.39 -0.01 1.29 16 30 H 0.06 1.95 6.80 -2.38 -0.02 1.93 16 31 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.05 1.32 8.12 -2.39 -0.02 1.30 16 33 H 0.00 0.19 6.01 -2.39 -0.01 0.18 16 34 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 35 H 0.09 3.33 6.53 -2.38 -0.02 3.31 16 36 H 0.05 2.42 4.42 -2.39 -0.01 2.41 16 37 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.02 0.69 7.68 -2.38 -0.02 0.67 16 42 H 0.09 2.28 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -56.94 302.88 1.57 -55.37 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 0.25 Total: 25.32 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.14 Total: -25.67 kcal Atomic # 7 Polarization: -96.30 SS G_CDS: -4.85 Total: -101.14 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -56.94 1.57 -55.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308631724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.428 kcal (2) G-P(sol) polarization free energy of solvation -56.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds