Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46569 * 2 1 4 4 C 1.50696 * 109.46891 * 119.99411 * 2 1 3 5 5 H 1.08007 * 119.99876 * 114.46046 * 4 2 1 6 6 C 1.37876 * 120.00328 * 294.46195 * 4 2 1 7 7 N 1.31517 * 120.00216 * 162.93346 * 6 4 2 8 8 Si 1.86796 * 120.00061 * 343.20438 * 6 4 2 9 9 H 1.48495 * 109.47378 * 179.72471 * 8 6 4 10 10 H 1.48504 * 109.47162 * 299.73041 * 8 6 4 11 11 H 1.48499 * 109.47035 * 59.72698 * 8 6 4 12 12 N 1.46891 * 109.47184 * 239.99654 * 2 1 3 13 13 C 1.46902 * 110.99853 * 108.09609 * 12 2 1 14 14 C 1.52994 * 109.47430 * 304.85318 * 13 12 2 15 15 C 1.53008 * 109.47203 * 64.85184 * 13 12 2 16 16 C 1.52997 * 109.47185 * 184.84754 * 13 12 2 17 17 N 1.46901 * 109.47470 * 295.74050 * 16 13 12 18 18 C 1.48534 * 110.99925 * 59.13446 * 17 16 13 19 19 C 1.54936 * 103.22751 * 159.72154 * 18 17 16 20 20 C 1.54596 * 102.92160 * 322.58956 * 19 18 17 21 21 C 1.47897 * 111.00243 * 176.53440 * 17 16 13 22 22 H 1.09005 * 109.47008 * 174.73271 * 1 2 3 23 23 H 1.08999 * 109.47271 * 294.73529 * 1 2 3 24 24 H 1.08998 * 109.47375 * 54.73786 * 1 2 3 25 25 H 0.97008 * 119.99872 * 355.19028 * 7 6 4 26 26 H 1.00898 * 111.00347 * 344.14393 * 12 2 1 27 27 H 1.08996 * 109.47464 * 65.25561 * 14 13 12 28 28 H 1.09004 * 109.47517 * 185.25663 * 14 13 12 29 29 H 1.09003 * 109.46855 * 305.25213 * 14 13 12 30 30 H 1.09001 * 109.47054 * 61.81548 * 15 13 12 31 31 H 1.08993 * 109.47420 * 181.81705 * 15 13 12 32 32 H 1.09000 * 109.46516 * 301.82363 * 15 13 12 33 33 H 1.09003 * 109.47037 * 55.74131 * 16 13 12 34 34 H 1.09003 * 109.47089 * 175.74028 * 16 13 12 35 35 H 1.08994 * 110.66757 * 278.15813 * 18 17 16 36 36 H 1.09002 * 110.66728 * 41.28856 * 18 17 16 37 37 H 1.09001 * 110.72878 * 204.22807 * 19 18 17 38 38 H 1.09001 * 110.72447 * 80.94500 * 19 18 17 39 39 H 1.09007 * 110.30515 * 263.03901 * 20 19 18 40 40 H 1.09003 * 110.39558 * 140.91578 * 20 19 18 41 41 H 1.09002 * 109.91740 * 333.50683 * 21 17 16 42 42 H 1.09001 * 109.91923 * 94.60355 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5775 -1.6377 1.1340 6 6 1.7960 -0.1763 2.4795 7 7 1.9232 -0.9283 3.5510 8 14 1.2877 1.6131 2.6494 9 1 1.0893 1.9372 4.0849 10 1 2.3502 2.4850 2.0872 11 1 0.0193 1.8396 1.9110 12 7 2.0197 -0.6925 -1.1993 13 6 2.5968 0.2592 -2.1580 14 6 1.5664 1.3418 -2.4851 15 6 3.8410 0.9074 -1.5472 16 6 2.9844 -0.4801 -3.4402 17 7 4.0475 -1.4498 -3.1441 18 6 3.6022 -2.4326 -2.1234 19 6 4.5761 -3.6204 -2.3264 20 6 4.7618 -3.6568 -3.8607 21 6 4.3911 -2.2426 -4.3444 22 1 -0.3633 -1.0234 -0.0943 23 1 -0.3634 0.4300 0.9334 24 1 -0.3634 0.5933 -0.8391 25 1 2.1148 -1.8748 3.4593 26 1 1.2860 -1.2369 -1.6275 27 1 1.3600 1.9292 -1.5905 28 1 1.9595 1.9939 -3.2652 29 1 0.6455 0.8736 -2.8329 30 1 4.5878 0.1399 -1.3439 31 1 4.2506 1.6370 -2.2456 32 1 3.5707 1.4067 -0.6168 33 1 2.1139 -1.0044 -3.8345 34 1 3.3422 0.2370 -4.1791 35 1 3.7043 -2.0186 -1.1203 36 1 2.5738 -2.7421 -2.3101 37 1 4.1312 -4.5494 -1.9695 38 1 5.5262 -3.4299 -1.8273 39 1 4.0947 -4.3956 -4.3051 40 1 5.7978 -3.8834 -4.1127 41 1 3.5330 -2.2924 -5.0147 42 1 5.2382 -1.7890 -4.8591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308631725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = 10.640923 kcal Electronic energy + Delta-G solvation = -18954.147453 eV Core-core repulsion = 16355.220715 eV Total energy + Delta-G solvation = -2598.926739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.25677 -37.05812 -33.67867 -31.69587 -30.39109 -28.65436 -27.52436 -26.78513 -25.07564 -24.50261 -21.10715 -20.51903 -19.69782 -18.58886 -17.36403 -15.85610 -15.68731 -14.87117 -14.28783 -13.92415 -13.73000 -13.31104 -12.98707 -12.89479 -12.57225 -12.00765 -11.91835 -11.82128 -11.70066 -11.45347 -11.22418 -11.16573 -11.03423 -10.74313 -10.54274 -10.50946 -10.34681 -10.26225 -10.10298 -9.68913 -9.59191 -8.83778 -8.19521 -8.00079 -7.24899 -6.29420 -3.89843 3.39792 3.45662 3.62600 4.35713 4.56648 4.90801 4.96646 5.00275 5.17210 5.29826 5.35749 5.49841 5.64438 5.68490 5.75207 5.76954 5.91381 5.94719 6.02986 6.06016 6.16949 6.25415 6.27471 6.34376 6.41676 6.44550 6.52847 6.55075 6.58168 6.79979 6.96967 7.00569 7.09891 7.22268 7.39174 7.48620 7.94713 8.35602 8.42288 8.56667 9.14466 9.75783 11.06416 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.007825 C = 0.006810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.848519 B = 3577.237719 C = 4110.393103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.184 3.816 3 H 0.025 0.975 4 C -0.569 4.569 5 H 0.063 0.937 6 C 0.027 3.973 7 N -0.914 5.914 8 Si 1.035 2.965 9 H -0.287 1.287 10 H -0.285 1.285 11 H -0.278 1.278 12 N -0.657 5.657 13 C 0.109 3.891 14 C -0.177 4.177 15 C -0.123 4.123 16 C 0.064 3.936 17 N -0.508 5.508 18 C 0.053 3.947 19 C -0.133 4.133 20 C -0.129 4.129 21 C 0.033 3.967 22 H 0.044 0.956 23 H 0.058 0.942 24 H 0.020 0.980 25 H 0.267 0.733 26 H 0.319 0.681 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.039 0.961 32 H 0.055 0.945 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.122 0.878 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.064 0.936 41 H 0.034 0.966 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.966 -0.119 -14.957 15.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.076 3.924 3 H 0.043 0.957 4 C -0.608 4.608 5 H 0.082 0.918 6 C -0.177 4.177 7 N -0.549 5.549 8 Si 0.865 3.135 9 H -0.213 1.213 10 H -0.212 1.212 11 H -0.205 1.205 12 N -0.286 5.286 13 C 0.017 3.983 14 C -0.237 4.237 15 C -0.180 4.180 16 C -0.065 4.065 17 N -0.232 5.232 18 C -0.074 4.074 19 C -0.171 4.171 20 C -0.168 4.168 21 C -0.095 4.095 22 H 0.063 0.937 23 H 0.077 0.923 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.136 0.864 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.043 0.957 34 H 0.087 0.913 35 H 0.140 0.860 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.052 0.948 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.685 1.210 -13.366 13.687 hybrid contribution -1.382 -1.184 -1.924 2.649 sum 1.303 0.026 -15.290 15.346 Atomic orbital electron populations 1.22900 1.00865 0.99957 0.99958 1.19597 0.89066 0.94340 0.89443 0.95731 1.22027 1.38168 1.10571 0.90018 0.91839 1.25588 0.94859 1.05020 0.92277 1.70829 1.45519 1.07630 1.30887 0.84218 0.76849 0.76591 0.75891 1.21325 1.21170 1.20454 1.61312 1.37028 1.23957 1.06312 1.20967 0.94807 0.91091 0.91443 1.22622 0.99322 1.00063 1.01672 1.21677 0.96965 0.99894 0.99479 1.22287 0.92327 0.95208 0.96682 1.64766 1.37276 1.14258 1.06853 1.23467 0.95036 0.89794 0.99093 1.22628 1.00754 0.99064 0.94650 1.22371 1.01096 0.96232 0.97069 1.22852 0.99723 0.93446 0.93466 0.93675 0.92348 0.96100 0.92313 0.86381 0.91840 0.93186 0.93391 0.90823 0.94205 0.92590 0.95715 0.91349 0.86004 0.94444 0.91765 0.91273 0.92273 0.91749 0.94779 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.80 8.61 37.16 0.32 -3.48 16 2 C 0.18 4.16 1.19 -68.87 -0.08 4.08 16 3 H 0.03 0.58 3.48 -51.93 -0.18 0.40 16 4 C -0.57 -15.58 9.11 -34.44 -0.31 -15.89 16 5 H 0.06 1.91 8.06 -52.48 -0.42 1.48 16 6 C 0.03 0.76 5.31 -17.82 -0.09 0.66 16 7 N -0.91 -28.08 13.70 55.43 0.76 -27.32 16 8 Si 1.03 25.17 26.29 -169.99 -4.47 20.70 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.25 5.68 56.52 0.32 -5.92 16 12 N -0.66 -12.67 2.64 -94.25 -0.25 -12.92 16 13 C 0.11 1.82 0.60 -131.60 -0.08 1.74 16 14 C -0.18 -2.74 7.32 37.15 0.27 -2.46 16 15 C -0.12 -2.20 8.28 37.16 0.31 -1.89 16 16 C 0.06 0.94 4.04 -3.83 -0.02 0.93 16 17 N -0.51 -7.72 4.38 -230.45 -1.01 -8.73 16 18 C 0.05 0.87 4.63 -1.90 -0.01 0.86 16 19 C -0.13 -1.87 7.06 -24.87 -0.18 -2.04 16 20 C -0.13 -1.56 6.93 -25.37 -0.18 -1.73 16 21 C 0.03 0.43 6.70 -2.76 -0.02 0.41 16 22 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 23 H 0.06 1.33 4.77 -51.93 -0.25 1.08 16 24 H 0.02 0.38 6.83 -51.93 -0.35 0.03 16 25 H 0.27 8.20 8.73 -40.82 -0.36 7.84 16 26 H 0.32 5.92 7.33 -39.29 -0.29 5.64 16 27 H 0.06 1.08 6.39 -51.93 -0.33 0.75 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.71 7.82 -51.93 -0.41 0.30 16 30 H 0.07 1.42 7.12 -51.93 -0.37 1.05 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 1.12 6.41 -51.93 -0.33 0.79 16 33 H 0.02 0.36 7.97 -51.93 -0.41 -0.05 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.12 2.44 6.56 -51.93 -0.34 2.10 16 36 H 0.04 0.63 7.11 -51.93 -0.37 0.26 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.42 7.68 -51.93 -0.40 0.02 16 42 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 306.13 15.07 4.61 4.61 Total: -1.00 -28.35 306.13 -7.91 -36.26 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: -7.49 Total: 6.20 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -0.06 Total: -18.81 kcal Atomic # 7 Polarization: -48.46 SS G_CDS: -0.50 Total: -48.96 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -4.47 Total: 20.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.35 -7.91 -36.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308631725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.902 kcal (2) G-P(sol) polarization free energy of solvation -28.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds