Wall clock time and date at job start Mon Mar 30 2020 03:31:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46569 * 2 1 4 4 C 1.50696 * 109.46891 * 119.99411 * 2 1 3 5 5 H 1.08007 * 119.99876 * 114.46046 * 4 2 1 6 6 C 1.37876 * 120.00328 * 294.46195 * 4 2 1 7 7 N 1.31517 * 120.00216 * 162.93346 * 6 4 2 8 8 Si 1.86796 * 120.00061 * 343.20438 * 6 4 2 9 9 H 1.48495 * 109.47378 * 179.72471 * 8 6 4 10 10 H 1.48504 * 109.47162 * 299.73041 * 8 6 4 11 11 H 1.48499 * 109.47035 * 59.72698 * 8 6 4 12 12 N 1.46891 * 109.47184 * 239.99654 * 2 1 3 13 13 C 1.46902 * 110.99853 * 108.09609 * 12 2 1 14 14 C 1.52994 * 109.47430 * 304.85318 * 13 12 2 15 15 C 1.53008 * 109.47203 * 64.85184 * 13 12 2 16 16 C 1.52997 * 109.47185 * 184.84754 * 13 12 2 17 17 N 1.46901 * 109.47470 * 295.74050 * 16 13 12 18 18 C 1.48534 * 110.99925 * 59.13446 * 17 16 13 19 19 C 1.54936 * 103.22751 * 159.72154 * 18 17 16 20 20 C 1.54596 * 102.92160 * 322.58956 * 19 18 17 21 21 C 1.47897 * 111.00243 * 176.53440 * 17 16 13 22 22 H 1.09005 * 109.47008 * 174.73271 * 1 2 3 23 23 H 1.08999 * 109.47271 * 294.73529 * 1 2 3 24 24 H 1.08998 * 109.47375 * 54.73786 * 1 2 3 25 25 H 0.97008 * 119.99872 * 355.19028 * 7 6 4 26 26 H 1.00898 * 111.00347 * 344.14393 * 12 2 1 27 27 H 1.08996 * 109.47464 * 65.25561 * 14 13 12 28 28 H 1.09004 * 109.47517 * 185.25663 * 14 13 12 29 29 H 1.09003 * 109.46855 * 305.25213 * 14 13 12 30 30 H 1.09001 * 109.47054 * 61.81548 * 15 13 12 31 31 H 1.08993 * 109.47420 * 181.81705 * 15 13 12 32 32 H 1.09000 * 109.46516 * 301.82363 * 15 13 12 33 33 H 1.09003 * 109.47037 * 55.74131 * 16 13 12 34 34 H 1.09003 * 109.47089 * 175.74028 * 16 13 12 35 35 H 1.08994 * 110.66757 * 278.15813 * 18 17 16 36 36 H 1.09002 * 110.66728 * 41.28856 * 18 17 16 37 37 H 1.09001 * 110.72878 * 204.22807 * 19 18 17 38 38 H 1.09001 * 110.72447 * 80.94500 * 19 18 17 39 39 H 1.09007 * 110.30515 * 263.03901 * 20 19 18 40 40 H 1.09003 * 110.39558 * 140.91578 * 20 19 18 41 41 H 1.09002 * 109.91740 * 333.50683 * 21 17 16 42 42 H 1.09001 * 109.91923 * 94.60355 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5775 -1.6377 1.1340 6 6 1.7960 -0.1763 2.4795 7 7 1.9232 -0.9283 3.5510 8 14 1.2877 1.6131 2.6494 9 1 1.0893 1.9372 4.0849 10 1 2.3502 2.4850 2.0872 11 1 0.0193 1.8396 1.9110 12 7 2.0197 -0.6925 -1.1993 13 6 2.5968 0.2592 -2.1580 14 6 1.5664 1.3418 -2.4851 15 6 3.8410 0.9074 -1.5472 16 6 2.9844 -0.4801 -3.4402 17 7 4.0475 -1.4498 -3.1441 18 6 3.6022 -2.4326 -2.1234 19 6 4.5761 -3.6204 -2.3264 20 6 4.7618 -3.6568 -3.8607 21 6 4.3911 -2.2426 -4.3444 22 1 -0.3633 -1.0234 -0.0943 23 1 -0.3634 0.4300 0.9334 24 1 -0.3634 0.5933 -0.8391 25 1 2.1148 -1.8748 3.4593 26 1 1.2860 -1.2369 -1.6275 27 1 1.3600 1.9292 -1.5905 28 1 1.9595 1.9939 -3.2652 29 1 0.6455 0.8736 -2.8329 30 1 4.5878 0.1399 -1.3439 31 1 4.2506 1.6370 -2.2456 32 1 3.5707 1.4067 -0.6168 33 1 2.1139 -1.0044 -3.8345 34 1 3.3422 0.2370 -4.1791 35 1 3.7043 -2.0186 -1.1203 36 1 2.5738 -2.7421 -2.3101 37 1 4.1312 -4.5494 -1.9695 38 1 5.5262 -3.4299 -1.8273 39 1 4.0947 -4.3956 -4.3051 40 1 5.7978 -3.8834 -4.1127 41 1 3.5330 -2.2924 -5.0147 42 1 5.2382 -1.7890 -4.8591 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308631725.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:19 Heat of formation + Delta-G solvation = -8.050823 kcal Electronic energy + Delta-G solvation = -18954.957988 eV Core-core repulsion = 16355.220715 eV Total energy + Delta-G solvation = -2599.737273 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.54680 -38.42439 -35.47765 -33.51043 -31.73476 -29.89541 -29.03404 -28.17377 -26.53229 -26.26014 -22.59137 -21.55685 -21.30416 -20.04729 -19.43194 -17.17707 -16.87024 -16.28536 -15.92977 -15.52192 -15.18075 -14.63906 -14.48878 -14.34564 -13.89759 -13.78989 -13.37790 -13.25404 -13.08397 -12.92029 -12.74345 -12.49715 -12.31635 -12.18361 -12.00382 -11.92353 -11.81206 -11.71874 -11.46436 -11.34656 -11.17646 -10.94555 -10.36871 -9.17651 -8.89293 -8.48982 -6.18379 1.44090 1.51714 1.69690 2.53812 3.15187 3.20523 3.52477 3.79339 3.91461 4.07663 4.15648 4.25053 4.39474 4.50885 4.56619 4.61301 4.69307 4.72611 4.77217 4.79879 4.84493 4.89947 4.96964 5.01519 5.03656 5.07013 5.13547 5.20374 5.26623 5.36607 5.41238 5.49774 5.58647 5.67407 6.04241 6.16394 6.19932 6.32451 6.55175 6.84917 6.90517 7.57496 8.76500 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.007825 C = 0.006810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.848519 B = 3577.237719 C = 4110.393103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.191 3.809 3 H 0.026 0.974 4 C -0.564 4.564 5 H 0.019 0.981 6 C -0.027 4.027 7 N -0.951 5.951 8 Si 1.074 2.926 9 H -0.294 1.294 10 H -0.270 1.270 11 H -0.243 1.243 12 N -0.664 5.664 13 C 0.107 3.893 14 C -0.173 4.173 15 C -0.117 4.117 16 C 0.069 3.931 17 N -0.520 5.520 18 C 0.060 3.940 19 C -0.134 4.134 20 C -0.122 4.122 21 C 0.033 3.967 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.054 0.946 25 H 0.250 0.750 26 H 0.324 0.676 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.032 0.968 34 H 0.090 0.910 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.375 1.259 -18.127 18.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.082 3.918 3 H 0.044 0.956 4 C -0.603 4.603 5 H 0.038 0.962 6 C -0.224 4.224 7 N -0.588 5.588 8 Si 0.897 3.103 9 H -0.221 1.221 10 H -0.196 1.196 11 H -0.168 1.168 12 N -0.294 5.294 13 C 0.015 3.985 14 C -0.232 4.232 15 C -0.174 4.174 16 C -0.059 4.059 17 N -0.245 5.245 18 C -0.067 4.067 19 C -0.172 4.172 20 C -0.160 4.160 21 C -0.094 4.094 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.142 0.858 27 H 0.066 0.934 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.064 0.936 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.096 2.578 -16.583 16.913 hybrid contribution -1.100 -1.700 -0.994 2.255 sum 0.997 0.878 -17.577 17.627 Atomic orbital electron populations 1.22749 0.99264 1.00374 1.00612 1.19329 0.89991 0.93638 0.88866 0.95644 1.22256 1.36589 1.08928 0.92481 0.96224 1.26951 0.94788 1.08463 0.92178 1.70960 1.48855 1.06906 1.32116 0.83735 0.78573 0.72015 0.75999 1.22101 1.19574 1.16754 1.61113 1.37054 1.24841 1.06380 1.21058 0.94490 0.91332 0.91601 1.22540 0.99233 0.99604 1.01825 1.21612 0.97209 0.99634 0.98990 1.22258 0.92627 0.95374 0.95668 1.64720 1.37457 1.14495 1.07793 1.23144 0.95303 0.90857 0.97436 1.22592 0.99634 0.98191 0.96778 1.22349 1.02456 0.96366 0.94786 1.22924 1.00612 0.93410 0.92504 0.94005 0.93733 0.92694 0.94168 0.85780 0.93390 0.90580 0.92365 0.93045 0.91570 0.95322 0.94945 0.89204 0.90479 0.95122 0.91466 0.92234 0.90898 0.90251 0.93621 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.99 8.61 71.98 0.62 -6.37 16 2 C 0.19 8.56 1.19 44.17 0.05 8.62 16 3 H 0.03 1.17 3.48 -2.39 -0.01 1.17 16 4 C -0.56 -31.98 9.11 25.60 0.23 -31.75 16 5 H 0.02 1.25 8.06 -2.91 -0.02 1.23 16 6 C -0.03 -1.60 5.31 84.65 0.45 -1.15 16 7 N -0.95 -60.98 13.70 21.45 0.29 -60.68 16 8 Si 1.07 50.69 26.29 68.60 1.80 52.49 16 9 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.24 -10.08 5.68 99.48 0.56 -9.52 16 12 N -0.66 -25.36 2.64 -452.11 -1.20 -26.56 16 13 C 0.11 3.35 0.60 3.53 0.00 3.36 16 14 C -0.17 -4.70 7.32 71.98 0.53 -4.17 16 15 C -0.12 -4.07 8.28 71.98 0.60 -3.47 16 16 C 0.07 1.84 4.04 86.30 0.35 2.19 16 17 N -0.52 -14.93 4.38 -883.02 -3.87 -18.79 16 18 C 0.06 1.99 4.63 86.65 0.40 2.39 16 19 C -0.13 -3.71 7.06 31.80 0.22 -3.49 16 20 C -0.12 -2.62 6.93 31.47 0.22 -2.40 16 21 C 0.03 0.75 6.70 86.45 0.58 1.33 16 22 H 0.04 1.70 8.06 -2.38 -0.02 1.68 16 23 H 0.04 1.93 4.77 -2.39 -0.01 1.92 16 24 H 0.05 1.86 6.83 -2.39 -0.02 1.85 16 25 H 0.25 16.31 8.73 -92.70 -0.81 15.50 16 26 H 0.32 11.74 7.33 -89.70 -0.66 11.08 16 27 H 0.05 1.46 6.39 -2.39 -0.02 1.45 16 28 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.06 1.47 7.82 -2.39 -0.02 1.45 16 30 H 0.05 1.99 7.12 -2.39 -0.02 1.98 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.03 1.12 6.41 -2.39 -0.02 1.11 16 33 H 0.03 0.83 7.97 -2.39 -0.02 0.81 16 34 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 3.26 6.56 -2.39 -0.02 3.25 16 36 H 0.03 1.03 7.11 -2.39 -0.02 1.01 16 37 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.05 0.94 7.68 -2.39 -0.02 0.92 16 42 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -64.24 306.13 1.43 -62.81 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 0.14 Total: 25.64 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 4.25 Total: -34.91 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -4.77 Total: -106.03 kcal Atomic # 14 Polarization: 50.69 SS G_CDS: 1.80 Total: 52.49 kcal Total: -64.24 1.43 -62.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308631725.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.760 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds