Wall clock time and date at job start Mon Mar 30 2020 03:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46675 * 2 1 4 4 C 1.52993 * 109.47250 * 239.99239 * 2 1 3 5 5 N 1.46903 * 109.47220 * 65.00362 * 4 2 1 6 6 C 1.46899 * 111.00334 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47257 * 174.69916 * 6 5 4 8 8 C 1.50709 * 115.54570 * 65.16976 * 7 6 5 9 9 H 1.07997 * 120.00060 * 264.95936 * 8 7 6 10 10 C 1.37877 * 119.99914 * 84.96544 * 8 7 6 11 11 N 1.31510 * 120.00024 * 353.06093 * 10 8 7 12 12 Si 1.86801 * 119.99594 * 173.05890 * 10 8 7 13 13 H 1.48494 * 109.47492 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46807 * 120.00236 * 12 10 8 15 15 H 1.48501 * 109.46975 * 239.99600 * 12 10 8 16 16 C 1.52993 * 117.50056 * 279.50151 * 7 6 5 17 17 C 1.53000 * 117.50084 * 210.83674 * 7 6 5 18 18 C 1.53006 * 109.46417 * 119.99278 * 2 1 3 19 19 N 1.46894 * 109.47522 * 294.99835 * 18 2 1 20 20 C 1.46902 * 111.00143 * 170.00336 * 19 18 2 21 21 C 1.46897 * 111.00437 * 293.96019 * 19 18 2 22 22 H 1.08993 * 109.47173 * 300.00652 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00330 * 1 2 3 24 24 H 1.08995 * 109.46840 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47519 * 305.00065 * 4 2 1 26 26 H 1.09002 * 109.46827 * 184.99939 * 4 2 1 27 27 H 1.00897 * 110.99622 * 56.04235 * 5 4 2 28 28 H 1.09002 * 109.46563 * 294.70200 * 6 5 4 29 29 H 1.09000 * 109.46789 * 54.69466 * 6 5 4 30 30 H 0.96997 * 119.99658 * 185.03427 * 11 10 8 31 31 H 1.08999 * 117.49896 * 359.97438 * 16 7 6 32 32 H 1.08995 * 117.50183 * 145.02307 * 16 7 6 33 33 H 1.08992 * 117.50013 * 214.98421 * 17 7 6 34 34 H 1.08995 * 117.49435 * 359.97438 * 17 7 6 35 35 H 1.08996 * 109.47016 * 55.00789 * 18 2 1 36 36 H 1.09001 * 109.46626 * 174.99775 * 18 2 1 37 37 H 1.08996 * 109.46680 * 60.00478 * 20 19 18 38 38 H 1.08996 * 109.47199 * 180.02562 * 20 19 18 39 39 H 1.09004 * 109.46710 * 300.00159 * 20 19 18 40 40 H 1.09008 * 109.47168 * 59.99404 * 21 19 18 41 41 H 1.08994 * 109.47394 * 179.97438 * 21 19 18 42 42 H 1.09006 * 109.47157 * 300.00295 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2491 5 7 1.6516 0.0372 -2.4456 6 6 2.1260 -0.6269 -3.6671 7 6 1.5919 0.1173 -4.8925 8 6 2.1022 1.5240 -5.0721 9 1 1.5279 2.3586 -4.6982 10 6 3.3023 1.7452 -5.7139 11 7 4.0666 0.7285 -6.0478 12 14 3.8423 3.4892 -6.1092 13 1 2.8124 4.4466 -5.6319 14 1 5.1330 3.7732 -5.4320 15 1 4.0113 3.6343 -7.5774 16 6 0.1527 -0.1724 -5.3232 17 6 1.3226 -0.7032 -6.1555 18 6 2.0399 -0.7212 1.2494 19 7 1.6513 0.0376 2.4457 20 6 1.9123 -0.7354 3.6673 21 6 2.3340 1.3376 2.4895 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.6055 -1.7199 -1.2949 26 1 3.1264 -0.7995 -1.2053 27 1 1.9883 0.9870 -2.3967 28 1 3.2158 -0.6201 -3.6843 29 1 1.7687 -1.6565 -3.6829 30 1 4.9428 0.8864 -6.4328 31 1 -0.4136 -0.8935 -4.7338 32 1 -0.4250 0.6541 -5.7369 33 1 1.5142 -0.2255 -7.1163 34 1 1.5264 -1.7730 -6.1135 35 1 1.6054 -1.7197 1.2953 36 1 3.1263 -0.7994 1.2058 37 1 2.9755 -0.9669 3.7304 38 1 1.6152 -0.1506 4.5378 39 1 1.3395 -1.6624 3.6399 40 1 2.0678 1.9177 1.6058 41 1 2.0279 1.8788 3.3847 42 1 3.4126 1.1811 2.5099 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308816287.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:28 Heat of formation + Delta-G solvation = 17.442787 kcal Electronic energy + Delta-G solvation = -17681.935222 eV Core-core repulsion = 15083.303434 eV Total energy + Delta-G solvation = -2598.631788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.26501 -36.85830 -35.06927 -32.02489 -31.78489 -27.68331 -26.75569 -26.34995 -25.22498 -23.27316 -21.59165 -20.87098 -19.79732 -18.85260 -15.92867 -15.73338 -15.44165 -14.95487 -14.76832 -14.54175 -13.93553 -13.78605 -13.34245 -12.98407 -12.55377 -12.48842 -11.99891 -11.77700 -11.70214 -11.52290 -11.40910 -11.32449 -10.97047 -10.85822 -10.64762 -10.41206 -10.34348 -10.25647 -10.07177 -9.34803 -8.69997 -8.39888 -8.39156 -8.01265 -7.40062 -5.99955 -4.05549 3.27955 3.37221 3.41452 3.88468 4.41895 4.82445 5.03834 5.06412 5.23577 5.28885 5.32915 5.40026 5.47089 5.54099 5.66984 5.70411 5.76351 5.80035 5.87061 5.99697 6.11709 6.25192 6.31392 6.50151 6.54051 6.59910 6.65700 6.77422 6.90475 6.91050 6.96310 6.99032 6.99793 7.22112 7.57938 7.61527 7.91205 8.07599 8.35926 8.54402 8.98184 9.59890 11.08076 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.025945 B = 0.005257 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.967309 B = 5325.124581 C = 5933.792297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.085 4.085 3 H 0.068 0.932 4 C 0.064 3.936 5 N -0.677 5.677 6 C 0.106 3.894 7 C 0.051 3.949 8 C -0.491 4.491 9 H 0.060 0.940 10 C 0.069 3.931 11 N -0.881 5.881 12 Si 0.886 3.114 13 H -0.272 1.272 14 H -0.286 1.286 15 H -0.284 1.284 16 C -0.199 4.199 17 C -0.164 4.164 18 C 0.059 3.941 19 N -0.544 5.544 20 C 0.025 3.975 21 C 0.021 3.979 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.042 0.958 25 H 0.061 0.939 26 H 0.016 0.984 27 H 0.345 0.655 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.258 0.742 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.030 0.970 37 H 0.022 0.978 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -2.502 14.606 15.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.104 4.104 3 H 0.086 0.914 4 C -0.067 4.067 5 N -0.308 5.308 6 C -0.022 4.022 7 C 0.050 3.950 8 C -0.529 4.529 9 H 0.079 0.921 10 C -0.133 4.133 11 N -0.518 5.518 12 Si 0.714 3.286 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.210 1.210 16 C -0.237 4.237 17 C -0.202 4.202 18 C -0.069 4.069 19 N -0.267 5.267 20 C -0.124 4.124 21 C -0.128 4.128 22 H 0.071 0.929 23 H 0.084 0.916 24 H 0.061 0.939 25 H 0.080 0.920 26 H 0.034 0.966 27 H 0.164 0.836 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.049 0.951 37 H 0.040 0.960 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.635 -2.747 14.398 15.102 hybrid contribution 2.394 0.837 -0.217 2.545 sum -1.241 -1.911 14.182 14.364 Atomic orbital electron populations 1.21566 0.93904 1.01150 1.01663 1.21140 0.97649 0.99333 0.92258 0.91352 1.21907 0.96497 0.97715 0.90565 1.60406 1.63842 1.06032 1.00513 1.21413 0.97185 0.94626 0.89021 1.18737 0.91386 0.94777 0.90104 1.20516 1.05372 0.90456 1.36522 0.92139 1.25005 0.96816 0.96460 0.95056 1.70004 1.09417 1.29739 1.42639 0.86634 0.78419 0.85372 0.78174 1.19646 1.21248 1.21043 1.22858 0.92861 1.02289 1.05663 1.22531 1.02982 0.97076 0.97597 1.22206 0.97592 0.97322 0.89761 1.61948 1.58224 1.04250 1.02293 1.22366 0.98922 0.98506 0.92565 1.22447 0.95913 0.91537 1.02875 0.92898 0.91629 0.93894 0.92019 0.96572 0.83636 0.94853 0.94604 0.93232 0.91693 0.90955 0.90406 0.92256 0.90888 0.95145 0.95965 0.91606 0.91487 0.90680 0.91718 0.95861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.97 37.16 0.33 -1.43 16 2 C -0.08 -1.18 2.45 -90.62 -0.22 -1.40 16 3 H 0.07 0.99 6.34 -51.93 -0.33 0.66 16 4 C 0.06 1.04 5.07 -3.83 -0.02 1.02 16 5 N -0.68 -13.28 5.93 -113.78 -0.67 -13.95 16 6 C 0.11 2.41 5.54 -3.83 -0.02 2.39 16 7 C 0.05 1.25 1.56 -155.66 -0.24 1.01 16 8 C -0.49 -13.17 8.32 -34.44 -0.29 -13.46 16 9 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 10 C 0.07 1.88 5.39 -17.82 -0.10 1.78 16 11 N -0.88 -24.87 12.95 55.43 0.72 -24.15 16 12 Si 0.89 20.98 29.55 -169.99 -5.02 15.95 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 C -0.20 -4.52 9.96 -26.69 -0.27 -4.79 16 17 C -0.16 -3.95 9.46 -26.69 -0.25 -4.20 16 18 C 0.06 0.72 4.35 -3.82 -0.02 0.71 16 19 N -0.54 -6.21 4.47 -251.26 -1.12 -7.33 16 20 C 0.02 0.23 9.57 60.07 0.57 0.81 16 21 C 0.02 0.22 9.33 60.06 0.56 0.78 16 22 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 23 H 0.06 1.03 7.75 -51.93 -0.40 0.63 16 24 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.35 7.11 8.30 -39.29 -0.33 6.79 16 28 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.04 0.78 8.08 -51.93 -0.42 0.36 16 30 H 0.26 6.98 8.32 -40.82 -0.34 6.64 16 31 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 33 H 0.08 2.00 8.14 -51.93 -0.42 1.57 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 36 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 37 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 39 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 40 H 0.07 0.84 6.37 -51.92 -0.33 0.51 16 41 H 0.06 0.60 8.12 -51.93 -0.42 0.17 16 42 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -27.57 336.86 -9.07 -36.64 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.09 Total: 4.55 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: 0.05 Total: -16.80 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: -1.08 Total: -45.43 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.57 -9.07 -36.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308816287.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.087 kcal (2) G-P(sol) polarization free energy of solvation -27.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds